diff options
Diffstat (limited to 'biology/t_coffee/Makefile')
| -rw-r--r-- | biology/t_coffee/Makefile | 38 |
1 files changed, 13 insertions, 25 deletions
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile index ce6bd55fd374..86b1078ecbbc 100644 --- a/biology/t_coffee/Makefile +++ b/biology/t_coffee/Makefile @@ -6,41 +6,33 @@ # PORTNAME= t_coffee -PORTVERSION= 1.37 +PORTVERSION= 2.03 CATEGORIES= biology MASTER_SITES= http://igs-server.cnrs-mrs.fr/~cnotred/Packages/ -DISTNAME= T-COFFEE_distribution +DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION} -MAINTAINER= ports@FreeBSD.org +MAINTAINER= fernan@iib.unsam.edu.ar COMMENT= A multiple DNA or protein sequence alignment package BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw RUN_DEPENDS= ${BUILD_DEPENDS} -WRKSRC= ${WRKDIR}/${DISTNAME}_Version_${PORTVERSION} BUILD_WRKSRC= ${WRKSRC}/t_coffee_source -MAKE_ENV= MV=${MV} USER_BIN=${LOCALBASE}/bin \ - CLUSTALW_4_TCOFFEE=${LOCALBASE}/bin/clustalw -MAKEFILE= makefile -PKGMESSAGE= ${WRKDIR}/pkg-message - -post-build: - @ cd ${WRKSRC}/lalign && ${SETENV} ${MAKE_ENV} ${MAKE} \ - ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET} +MAKE_ENV= MV=${MV} USER_BIN=${PREFIX}/bin \ + CLUSTALW_4_TCOFFEE=${LOCALBASE}/bin/clustalw -.include <bsd.port.pre.mk> +MAKEFILE= makefile +SCRIPTS= msf_aln2fasta_aln.pl blast_aln2fasta_aln.pl \ + fasta_aln2fasta_aln_unique_name.pl extract_from_pdb \ + fugue_client t_coffee_dpa t_coffee_dpa2 mocca do-install: -.for binfile in t_coffee_source/t_coffee lalign/lalign2list - @ ${INSTALL_PROGRAM} ${WRKSRC}/${binfile} ${PREFIX}/bin -.endfor -.for scriptfile in extract_from_pdb mocca + @ ${INSTALL_PROGRAM} ${WRKSRC}/bin/t_coffee ${PREFIX}/bin +.for scriptfile in ${SCRIPTS} @ ${INSTALL_SCRIPT} ${WRKSRC}/bin/${scriptfile} ${PREFIX}/bin .endfor post-install: - @ ${MKDIR} ${DATADIR} - @ ${INSTALL_DATA} ${WRKSRC}/html/* ${DATADIR} .if !defined(NOPORTDOCS) @ ${MKDIR} ${DOCSDIR} @ ${INSTALL_DATA} ${WRKSRC}/doc/* ${DOCSDIR} @@ -48,10 +40,6 @@ post-install: @ ${RMDIR} ${WRKSRC}/example/aln 2>/dev/null || ${TRUE} @ cd ${WRKSRC}/example && ${FIND} * \ | ${CPIO} --quiet -pdum -R ${SHAREOWN}:${SHAREGRP} ${EXAMPLESDIR} - @ ${SED} -e 's#%%DATADIR%%#${DATADIR}#' ${.CURDIR}/pkg-message \ - > ${PKGMESSAGE} -.if !defined(BATCH) - @ ${CAT} ${PKGMESSAGE} -.endif .endif -.include <bsd.port.post.mk> + +.include <bsd.port.mk> |