diff options
Diffstat (limited to 'biology/t_coffee/Makefile')
| -rw-r--r-- | biology/t_coffee/Makefile | 56 |
1 files changed, 56 insertions, 0 deletions
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile new file mode 100644 index 000000000000..f1d3ddb63800 --- /dev/null +++ b/biology/t_coffee/Makefile @@ -0,0 +1,56 @@ +# New ports collection makefile for: t_coffee +# Date created: 27 June 2001 +# Whom: Johann Visagie <wjv@FreeBSD.org> +# +# $FreeBSD$ +# + +PORTNAME= t_coffee +PORTVERSION= 1.37 +CATEGORIES= biology +MASTER_SITES= http://igs-server.cnrs-mrs.fr/~cnotred/Packages/ +DISTNAME= T-COFFEE_distribution + +MAINTAINER= wjv@FreeBSD.org + +BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw +RUN_DEPENDS= ${BUILD_DEPENDS} + +WRKSRC= ${WRKDIR}/${DISTNAME}_Version_${PORTVERSION} +BUILD_WRKSRC= ${WRKSRC}/t_coffee_source +MAKE_ENV= MV=${MV} USER_BIN=${LOCALBASE}/bin \ + CLUSTALW_4_TCOFFEE=${LOCALBASE}/bin/clustalw +MAKEFILE= makefile +PKGMESSAGE= ${WRKDIR}/pkg-message + +post-build: + @ cd ${WRKSRC}/lalign && ${SETENV} ${MAKE_ENV} ${MAKE} \ + ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET} + +.include <bsd.port.pre.mk> + +do-install: +.for binfile in t_coffee_source/t_coffee lalign/lalign2list + @ ${INSTALL_PROGRAM} ${WRKSRC}/${binfile} ${PREFIX}/bin +.endfor +.for scriptfile in extract_from_pdb mocca + @ ${INSTALL_SCRIPT} ${WRKSRC}/bin/${scriptfile} ${PREFIX}/bin +.endfor + +post-install: + @ ${MKDIR} ${DATADIR} + @ ${INSTALL_DATA} ${WRKSRC}/html/* ${DATADIR} +.if !defined(NOPORTDOCS) + @ ${MKDIR} ${DOCSDIR} + @ ${INSTALL_DATA} ${WRKSRC}/doc/* ${DOCSDIR} + @ ${MKDIR} ${EXAMPLESDIR} + @ ${RMDIR} ${WRKSRC}/example/aln 2>/dev/null || ${TRUE} + @ cd ${WRKSRC}/example && find * \ + | cpio --quiet -pdum -R ${SHAREOWN}:${SHAREGRP} ${EXAMPLESDIR} + @ ${SED} -e 's#%%DATADIR%%#${DATADIR}#' ${.CURDIR}/pkg-message \ + > ${PKGMESSAGE} +.if !defined(BATCH) + @ ${CAT} ${PKGMESSAGE} +.endif +.endif +.include <bsd.port.post.mk> |