diff options
Diffstat (limited to 'biology/tinker/pkg-plist')
| -rw-r--r-- | biology/tinker/pkg-plist | 79 |
1 files changed, 45 insertions, 34 deletions
diff --git a/biology/tinker/pkg-plist b/biology/tinker/pkg-plist index afba39f57dc1..fab9edbff2ef 100644 --- a/biology/tinker/pkg-plist +++ b/biology/tinker/pkg-plist @@ -22,6 +22,7 @@ bin/optirot bin/optrigid bin/path bin/pdbxyz +bin/polarize bin/protein bin/pss bin/pssrigid @@ -49,7 +50,6 @@ bin/xyzint bin/xyzpdb bin/xyzsybyl %%PORTDOCS%%share/doc/tinker/README -%%PORTDOCS%%share/doc/tinker/announce.txt %%PORTDOCS%%share/doc/tinker/guide.pdf %%PORTDOCS%%share/doc/tinker/guide.ps.gz %%PORTDOCS%%share/doc/tinker/guide.txt @@ -58,6 +58,11 @@ bin/xyzsybyl %%PORTDOCS%%share/doc/tinker/license.txt %%PORTDOCS%%share/doc/tinker/logo.pdf %%PORTDOCS%%share/doc/tinker/logo.ps.gz +%%PORTDOCS%%share/doc/tinker/release-3.2 +%%PORTDOCS%%share/doc/tinker/release-3.6 +%%PORTDOCS%%share/doc/tinker/release-3.7 +%%PORTDOCS%%share/doc/tinker/release-3.8 +%%PORTDOCS%%share/doc/tinker/release-3.9 %%PORTDOCS%%share/doc/tinker/summary.pdf %%PORTDOCS%%share/doc/tinker/summary.ps %%PORTDOCS%%share/doc/tinker/summary.txt @@ -104,24 +109,26 @@ bin/xyzsybyl %%PORTDOCS%%share/examples/tinker/salt.key %%PORTDOCS%%share/examples/tinker/salt.log %%PORTDOCS%%share/examples/tinker/salt.run -%%PORTDOCS%%share/tinker/bench/bench-1.key -%%PORTDOCS%%share/tinker/bench/bench-1.run -%%PORTDOCS%%share/tinker/bench/bench-1.xyz -%%PORTDOCS%%share/tinker/bench/bench-2.key -%%PORTDOCS%%share/tinker/bench/bench-2.run -%%PORTDOCS%%share/tinker/bench/bench-2.xyz -%%PORTDOCS%%share/tinker/bench/bench-3.key -%%PORTDOCS%%share/tinker/bench/bench-3.run -%%PORTDOCS%%share/tinker/bench/bench-3.xyz -%%PORTDOCS%%share/tinker/bench/bench-4.dyn0 -%%PORTDOCS%%share/tinker/bench/bench-4.key -%%PORTDOCS%%share/tinker/bench/bench-4.log -%%PORTDOCS%%share/tinker/bench/bench-4.run -%%PORTDOCS%%share/tinker/bench/bench-4.xyz -%%PORTDOCS%%share/tinker/bench/bench-5.dyn0 -%%PORTDOCS%%share/tinker/bench/bench-5.key -%%PORTDOCS%%share/tinker/bench/bench-5.run -%%PORTDOCS%%share/tinker/bench/bench-5.xyz +%%PORTDOCS%%share/tinker/bench/README +%%PORTDOCS%%share/tinker/bench/bench1.key +%%PORTDOCS%%share/tinker/bench/bench1.run +%%PORTDOCS%%share/tinker/bench/bench1.xyz +%%PORTDOCS%%share/tinker/bench/bench2.key +%%PORTDOCS%%share/tinker/bench/bench2.run +%%PORTDOCS%%share/tinker/bench/bench2.xyz +%%PORTDOCS%%share/tinker/bench/bench3.key +%%PORTDOCS%%share/tinker/bench/bench3.run +%%PORTDOCS%%share/tinker/bench/bench3.xyz +%%PORTDOCS%%share/tinker/bench/bench4.dyn0 +%%PORTDOCS%%share/tinker/bench/bench4.key +%%PORTDOCS%%share/tinker/bench/bench4.log +%%PORTDOCS%%share/tinker/bench/bench4.run +%%PORTDOCS%%share/tinker/bench/bench4.xyz +%%PORTDOCS%%share/tinker/bench/bench5.dyn0 +%%PORTDOCS%%share/tinker/bench/bench5.key +%%PORTDOCS%%share/tinker/bench/bench5.log +%%PORTDOCS%%share/tinker/bench/bench5.run +%%PORTDOCS%%share/tinker/bench/bench5.xyz %%PORTDOCS%%share/tinker/bench/results-2.3 %%PORTDOCS%%share/tinker/bench/results-2.4 %%PORTDOCS%%share/tinker/bench/results-2.9 @@ -131,11 +138,11 @@ bin/xyzsybyl %%PORTDOCS%%share/tinker/bench/results-3.5 %%PORTDOCS%%share/tinker/bench/results-3.7 %%PORTDOCS%%share/tinker/bench/results-3.8 +%%PORTDOCS%%share/tinker/bench/results-3.9 %%PORTDOCS%%share/tinker/params/README %%PORTDOCS%%share/tinker/params/amber.prm -%%PORTDOCS%%share/tinker/params/amberN.prm %%PORTDOCS%%share/tinker/params/charmm.prm -%%PORTDOCS%%share/tinker/params/emr.prm +%%PORTDOCS%%share/tinker/params/dudek.prm %%PORTDOCS%%share/tinker/params/hoch.prm %%PORTDOCS%%share/tinker/params/mm2.prm %%PORTDOCS%%share/tinker/params/mm3.prm @@ -144,7 +151,6 @@ bin/xyzsybyl %%PORTDOCS%%share/tinker/params/oplsaa.prm %%PORTDOCS%%share/tinker/params/smooth.prm %%PORTDOCS%%share/tinker/params/smoothaa.prm -%%PORTDOCS%%share/tinker/params/tinker.prm %%PORTDOCS%%share/tinker/params/water.prm %%PORTDOCS%%share/tinker/test/README %%PORTDOCS%%share/tinker/test/ala20.key @@ -163,10 +169,8 @@ bin/xyzsybyl %%PORTDOCS%%share/tinker/test/bdna.seq %%PORTDOCS%%share/tinker/test/bdna.xyz %%PORTDOCS%%share/tinker/test/bearing.key -%%PORTDOCS%%share/tinker/test/bearing.pdb %%PORTDOCS%%share/tinker/test/bearing.xyz %%PORTDOCS%%share/tinker/test/bearing2.key -%%PORTDOCS%%share/tinker/test/bearing2.pdb %%PORTDOCS%%share/tinker/test/bearing2.xyz %%PORTDOCS%%share/tinker/test/benzene.int %%PORTDOCS%%share/tinker/test/benzene.key @@ -208,10 +212,11 @@ bin/xyzsybyl %%PORTDOCS%%share/tinker/test/calmodulin.pdb %%PORTDOCS%%share/tinker/test/calmodulin.seq %%PORTDOCS%%share/tinker/test/calmodulin.xyz +%%PORTDOCS%%share/tinker/test/copper.key +%%PORTDOCS%%share/tinker/test/copper.xyz %%PORTDOCS%%share/tinker/test/cpentene.key %%PORTDOCS%%share/tinker/test/cpentene.xyz %%PORTDOCS%%share/tinker/test/crambin.key -%%PORTDOCS%%share/tinker/test/crambin.min %%PORTDOCS%%share/tinker/test/crambin.pdb %%PORTDOCS%%share/tinker/test/crambin.seq %%PORTDOCS%%share/tinker/test/crambin.super @@ -231,15 +236,15 @@ bin/xyzsybyl %%PORTDOCS%%share/tinker/test/cyclo2.int %%PORTDOCS%%share/tinker/test/cyclo2.key %%PORTDOCS%%share/tinker/test/cyclo2.xyz +%%PORTDOCS%%share/tinker/test/dang.key +%%PORTDOCS%%share/tinker/test/dang.xyz +%%PORTDOCS%%share/tinker/test/diamond.key +%%PORTDOCS%%share/tinker/test/diamond.xyz %%PORTDOCS%%share/tinker/test/diene.int %%PORTDOCS%%share/tinker/test/diene.key %%PORTDOCS%%share/tinker/test/diene.xyz %%PORTDOCS%%share/tinker/test/dimethane.key %%PORTDOCS%%share/tinker/test/dimethane.xyz -%%PORTDOCS%%share/tinker/test/diwater.key -%%PORTDOCS%%share/tinker/test/diwater.lin -%%PORTDOCS%%share/tinker/test/diwater.min -%%PORTDOCS%%share/tinker/test/diwater.xyz %%PORTDOCS%%share/tinker/test/enkephalin.int %%PORTDOCS%%share/tinker/test/enkephalin.key %%PORTDOCS%%share/tinker/test/enkephalin.make @@ -273,8 +278,13 @@ bin/xyzsybyl %%PORTDOCS%%share/tinker/test/furan.xyz %%PORTDOCS%%share/tinker/test/glucose.key %%PORTDOCS%%share/tinker/test/glucose.xyz +%%PORTDOCS%%share/tinker/test/graphite.key +%%PORTDOCS%%share/tinker/test/graphite.xyz +%%PORTDOCS%%share/tinker/test/helix.dyn %%PORTDOCS%%share/tinker/test/helix.key %%PORTDOCS%%share/tinker/test/helix.xyz +%%PORTDOCS%%share/tinker/test/heme.key +%%PORTDOCS%%share/tinker/test/heme.xyz %%PORTDOCS%%share/tinker/test/hexane.int %%PORTDOCS%%share/tinker/test/hexane.key %%PORTDOCS%%share/tinker/test/hexane.xyz @@ -301,6 +311,7 @@ bin/xyzsybyl %%PORTDOCS%%share/tinker/test/methanol.xyz %%PORTDOCS%%share/tinker/test/nacl.key %%PORTDOCS%%share/tinker/test/nacl.xyz +%%PORTDOCS%%share/tinker/test/naphthalene.int %%PORTDOCS%%share/tinker/test/naphthalene.key %%PORTDOCS%%share/tinker/test/naphthalene.xyz %%PORTDOCS%%share/tinker/test/nma.int @@ -320,21 +331,17 @@ bin/xyzsybyl %%PORTDOCS%%share/tinker/test/octane2.xyz %%PORTDOCS%%share/tinker/test/octene.key %%PORTDOCS%%share/tinker/test/octene.xyz +%%PORTDOCS%%share/tinker/test/palmitate.int %%PORTDOCS%%share/tinker/test/palmitate.key %%PORTDOCS%%share/tinker/test/palmitate.xyz %%PORTDOCS%%share/tinker/test/peptide.int %%PORTDOCS%%share/tinker/test/peptide.key %%PORTDOCS%%share/tinker/test/peptide.make -%%PORTDOCS%%share/tinker/test/peptide.min %%PORTDOCS%%share/tinker/test/peptide.pdb %%PORTDOCS%%share/tinker/test/peptide.seq %%PORTDOCS%%share/tinker/test/peptide.xyz %%PORTDOCS%%share/tinker/test/phenanth.key %%PORTDOCS%%share/tinker/test/phenanth.xyz -%%PORTDOCS%%share/tinker/test/photo.key -%%PORTDOCS%%share/tinker/test/photo.pdb -%%PORTDOCS%%share/tinker/test/photo.seq -%%PORTDOCS%%share/tinker/test/photo.xyz %%PORTDOCS%%share/tinker/test/propane.key %%PORTDOCS%%share/tinker/test/propane.ray %%PORTDOCS%%share/tinker/test/propane.xyz @@ -365,6 +372,10 @@ bin/xyzsybyl %%PORTDOCS%%share/tinker/test/thr.int %%PORTDOCS%%share/tinker/test/thr.key %%PORTDOCS%%share/tinker/test/thr.xyz +%%PORTDOCS%%share/tinker/test/tip3p.key +%%PORTDOCS%%share/tinker/test/tip3p.xyz +%%PORTDOCS%%share/tinker/test/tip4p.key +%%PORTDOCS%%share/tinker/test/tip4p.xyz %%PORTDOCS%%share/tinker/test/tip5p.key %%PORTDOCS%%share/tinker/test/tip5p.xyz %%PORTDOCS%%share/tinker/test/water.int |