aboutsummaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
Diffstat (limited to 'biology')
-rw-r--r--biology/L-Breeder/Makefile2
-rw-r--r--biology/boinc-simap/Makefile2
-rw-r--r--biology/embassy/Makefile2
-rw-r--r--biology/emboss/Makefile6
-rw-r--r--biology/genpak/Makefile2
-rw-r--r--biology/gperiodic/Makefile2
-rw-r--r--biology/lsysexp/Makefile2
-rw-r--r--biology/p5-Bio-Das/Makefile2
-rw-r--r--biology/p5-Bio-Graphics/Makefile1
-rw-r--r--biology/p5-Bio-Phylo/Makefile1
-rw-r--r--biology/p5-bioperl-run/Makefile2
-rw-r--r--biology/p5-bioperl/Makefile2
-rw-r--r--biology/povchem/Makefile2
-rw-r--r--biology/protomol/Makefile4
-rw-r--r--biology/pymol/Makefile4
-rw-r--r--biology/seaview/Makefile2
-rw-r--r--biology/treeviewx/Makefile2
-rw-r--r--biology/xdrawchem/Makefile2
18 files changed, 22 insertions, 20 deletions
diff --git a/biology/L-Breeder/Makefile b/biology/L-Breeder/Makefile
index 7261c343133e..48d8532a0393 100644
--- a/biology/L-Breeder/Makefile
+++ b/biology/L-Breeder/Makefile
@@ -8,7 +8,7 @@
PORTNAME= LBreeder
PORTVERSION= 1.0
-PORTREVISION= 14
+PORTREVISION= 15
CATEGORIES= biology
MASTER_SITES= http://www.simonyi.ox.ac.uk/dawkins/software/yan/L-Breeder/
DISTNAME= ${PORTNAME}-source
diff --git a/biology/boinc-simap/Makefile b/biology/boinc-simap/Makefile
index eeba9956a15f..754ffa52e00e 100644
--- a/biology/boinc-simap/Makefile
+++ b/biology/boinc-simap/Makefile
@@ -6,7 +6,7 @@
PORTNAME= boinc-simap
PORTVERSION= ${SIMAP_VERSION}.${HMMER_VERSION}
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= biology
MASTER_SITES= http://boinc.bio.wzw.tum.de/boincsimap/download/
DISTNAME= ${SIMAP_BINARY} ${HMMER_BINARY}
diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile
index 3e97544c852c..fc3d4588c53d 100644
--- a/biology/embassy/Makefile
+++ b/biology/embassy/Makefile
@@ -8,7 +8,7 @@
PORTNAME= embassy
PORTVERSION= 6.0.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= biology
MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/old/${PORTVERSION}/
DIST_SUBDIR= emboss
diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile
index 8ae70b6afba9..b7e0b08af0e7 100644
--- a/biology/emboss/Makefile
+++ b/biology/emboss/Makefile
@@ -7,7 +7,7 @@
PORTNAME= emboss
PORTVERSION= 6.0.1
-PORTREVISION= 2
+PORTREVISION= 3
RELEASE= ${PORTNAME:U}-${PORTVERSION}
CATEGORIES= biology
MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/old/${PORTVERSION}/
@@ -20,7 +20,7 @@ COMMENT= A collection of open source tools for genetic sequence analysis
BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw \
primer3:${PORTSDIR}/biology/primer3
LIB_DEPENDS= gd.4:${PORTSDIR}/graphics/gd \
- png.5:${PORTSDIR}/graphics/png
+ png.6:${PORTSDIR}/graphics/png
CONFLICTS= qmail-ldap-[0-9]* digest-[0-9]*
@@ -44,7 +44,7 @@ CONFIGURE_ARGS+= --with-docroot=${DOCSDIR}
USE_XORG= x11
USE_MOTIF= yes
LIB_DEPENDS+= gd.4:${PORTSDIR}/graphics/gd \
- png.5:${PORTSDIR}/graphics/png
+ png.6:${PORTSDIR}/graphics/png
.else
CONFIGURE_ARGS+= --without-x
.endif
diff --git a/biology/genpak/Makefile b/biology/genpak/Makefile
index ab9d1769de72..52af42a6097b 100644
--- a/biology/genpak/Makefile
+++ b/biology/genpak/Makefile
@@ -8,7 +8,7 @@
PORTNAME= genpak
PORTVERSION= 0.26
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology
MASTER_SITES= http://www.bioinformatics.org/genpak/download/
DISTNAME= gp-${PORTVERSION}
diff --git a/biology/gperiodic/Makefile b/biology/gperiodic/Makefile
index 32a65b2ef772..5307ba9555e0 100644
--- a/biology/gperiodic/Makefile
+++ b/biology/gperiodic/Makefile
@@ -7,7 +7,7 @@
PORTNAME= gperiodic
PORTVERSION= 2.0.10
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= biology
MASTER_SITES= http://www.frantz.fi/software/
diff --git a/biology/lsysexp/Makefile b/biology/lsysexp/Makefile
index e04596afd5fe..5d85f8a85aa4 100644
--- a/biology/lsysexp/Makefile
+++ b/biology/lsysexp/Makefile
@@ -7,7 +7,7 @@
PORTNAME= lsysexp
PORTVERSION= 0.67
-PORTREVISION= 10
+PORTREVISION= 11
CATEGORIES= biology
MASTER_SITES= http://coscorrosa.com/programs/${PORTNAME}/download/ \
http://freebsd.unixfreunde.de/sources/
diff --git a/biology/p5-Bio-Das/Makefile b/biology/p5-Bio-Das/Makefile
index 665af0ce2df0..2f76a8edd509 100644
--- a/biology/p5-Bio-Das/Makefile
+++ b/biology/p5-Bio-Das/Makefile
@@ -7,7 +7,7 @@
PORTNAME= Bio-Das
PORTVERSION= 1.14
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
diff --git a/biology/p5-Bio-Graphics/Makefile b/biology/p5-Bio-Graphics/Makefile
index e5367f0d53b7..b5665e5769fe 100644
--- a/biology/p5-Bio-Graphics/Makefile
+++ b/biology/p5-Bio-Graphics/Makefile
@@ -7,6 +7,7 @@
PORTNAME= Bio-Graphics
PORTVERSION= 2.01
+PORTREVISION= 1
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index 343ca431689a..41a1679a8a96 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -7,6 +7,7 @@
PORTNAME= Bio-Phylo
PORTVERSION= 0.21
+PORTREVISION= 1
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
diff --git a/biology/p5-bioperl-run/Makefile b/biology/p5-bioperl-run/Makefile
index 918abe899628..394ff80508e6 100644
--- a/biology/p5-bioperl-run/Makefile
+++ b/biology/p5-bioperl-run/Makefile
@@ -7,7 +7,7 @@
PORTNAME= bioperl-run
PORTVERSION= 1.6.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= biology perl5
MASTER_SITES= http://bioperl.org/DIST/ \
CPAN
diff --git a/biology/p5-bioperl/Makefile b/biology/p5-bioperl/Makefile
index b4599d35cbff..d6a14b91b051 100644
--- a/biology/p5-bioperl/Makefile
+++ b/biology/p5-bioperl/Makefile
@@ -7,7 +7,7 @@
PORTNAME= bioperl
PORTVERSION= 1.6.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= biology perl5
MASTER_SITES= http://bioperl.org/DIST/ \
CPAN
diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile
index 3861e28bb5c4..acadc879a8d1 100644
--- a/biology/povchem/Makefile
+++ b/biology/povchem/Makefile
@@ -7,7 +7,7 @@
PORTNAME= povchem
PORTVERSION= 1.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= biology graphics
MASTER_SITES= http://www.chemicalgraphics.com/paul/PC_Dist/v1.00/
DISTFILES= povchem.c \
diff --git a/biology/protomol/Makefile b/biology/protomol/Makefile
index 409a7ce5bf4e..102dd98a43e8 100644
--- a/biology/protomol/Makefile
+++ b/biology/protomol/Makefile
@@ -6,7 +6,7 @@
PORTNAME= protomol
PORTVERSION= 2.0.3
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= biology
MASTER_SITES= SF/${PORTNAME}/ProtoMol/${PORTVERSION}
DISTNAME= ${PORTNAME}-${PORTVERSION}-tar.gz
@@ -15,7 +15,7 @@ EXTRACT_SUFX= # nada
MAINTAINER= sangwoos@gmail.com
COMMENT= OO, component based, framework for molecular dynamics (MD) simulations
-LIB_DEPENDS= png.5:${PORTSDIR}/graphics/png \
+LIB_DEPENDS= png.6:${PORTSDIR}/graphics/png \
jpeg.11:${PORTSDIR}/graphics/jpeg \
tiff.4:${PORTSDIR}/graphics/tiff
diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile
index 8d0b0fa086bb..c15d04dbfa3b 100644
--- a/biology/pymol/Makefile
+++ b/biology/pymol/Makefile
@@ -6,7 +6,7 @@
PORTNAME= pymol
PORTVERSION= 1.0r2
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= biology python
MASTER_SITES= ${MASTER_SITE_LOCAL:S|%SUBDIR%|maho/pymol|}
@@ -16,7 +16,7 @@ COMMENT= Free and Open-Source molecular modeling system
BUILD_DEPENDS= ${PYNUMERIC}
RUN_DEPENDS= ${PYNUMERIC} \
${PYTHON_SITELIBDIR}/Pmw:${PORTSDIR}/x11-toolkits/py-Pmw
-LIB_DEPENDS= png.5:${PORTSDIR}/graphics/png \
+LIB_DEPENDS= png.6:${PORTSDIR}/graphics/png \
freetype.9:${PORTSDIR}/print/freetype2
WRKSRC= ${WRKDIR}/pymol-${PORTVERSION}
diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile
index f5abbf2b6c8b..335f3e9aca8e 100644
--- a/biology/seaview/Makefile
+++ b/biology/seaview/Makefile
@@ -8,7 +8,7 @@
PORTNAME= seaview
PORTVERSION= 2006.02.13
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology
MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/
DISTNAME= ${PORTNAME}${PORTVERSION:S/.//g}
diff --git a/biology/treeviewx/Makefile b/biology/treeviewx/Makefile
index 13ca30f34de0..619f9f46d3ab 100644
--- a/biology/treeviewx/Makefile
+++ b/biology/treeviewx/Makefile
@@ -8,7 +8,7 @@
PORTNAME= treeviewx
PORTVERSION= 0.5.1
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= biology
MASTER_SITES= http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/${PORTVERSION:S/.1//}/
DISTNAME= tv-${PORTVERSION}
diff --git a/biology/xdrawchem/Makefile b/biology/xdrawchem/Makefile
index 6c182e317fca..e95f483367cb 100644
--- a/biology/xdrawchem/Makefile
+++ b/biology/xdrawchem/Makefile
@@ -7,7 +7,7 @@
PORTNAME= xdrawchem
PORTVERSION= 1.9.9
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= biology
MASTER_SITES= SF
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-20 06:37:29 +0000