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-rw-r--r--biology/embassy/Makefile2
-rw-r--r--biology/emboss/Makefile6
-rw-r--r--biology/genpak/Makefile2
-rw-r--r--biology/gperiodic/Makefile2
-rw-r--r--biology/p5-Bio-Das/Makefile2
-rw-r--r--biology/p5-Bio-Graphics/Makefile1
-rw-r--r--biology/p5-Bio-Phylo/Makefile1
-rw-r--r--biology/p5-bioperl-run/Makefile2
-rw-r--r--biology/p5-bioperl/Makefile2
-rw-r--r--biology/povchem/Makefile2
-rw-r--r--biology/protomol/Makefile4
-rw-r--r--biology/pymol/Makefile3
-rw-r--r--biology/seaview/Makefile2
-rw-r--r--biology/treeviewx/Makefile2
-rw-r--r--biology/xdrawchem/Makefile2
15 files changed, 19 insertions, 16 deletions
diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile
index 41d1b14baf4b..cbb37e290d66 100644
--- a/biology/embassy/Makefile
+++ b/biology/embassy/Makefile
@@ -8,7 +8,7 @@
PORTNAME= embassy
PORTVERSION= 6.2.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/
DIST_SUBDIR= emboss
diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile
index dbc931cf52bb..b9a5e0b31a43 100644
--- a/biology/emboss/Makefile
+++ b/biology/emboss/Makefile
@@ -8,7 +8,7 @@
PORTNAME= emboss
PORTVERSION= 6.2.0
RELEASE= ${PORTNAME:U}-${PORTVERSION}
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/
DISTNAME= ${RELEASE}
@@ -20,7 +20,7 @@ COMMENT= A collection of open source tools for genetic sequence analysis
BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw \
primer3:${PORTSDIR}/biology/primer3
LIB_DEPENDS= gd.4:${PORTSDIR}/graphics/gd \
- png.6:${PORTSDIR}/graphics/png
+ png15:${PORTSDIR}/graphics/png
CONFLICTS= qmail-ldap-[0-9]* digest-[0-9]*
@@ -44,7 +44,7 @@ CONFIGURE_ARGS+= --with-docroot=${DOCSDIR}
USE_XORG= x11
USE_MOTIF= yes
LIB_DEPENDS+= gd.4:${PORTSDIR}/graphics/gd \
- png.6:${PORTSDIR}/graphics/png
+ png15:${PORTSDIR}/graphics/png
.else
CONFIGURE_ARGS+= --without-x
.endif
diff --git a/biology/genpak/Makefile b/biology/genpak/Makefile
index 52af42a6097b..4735855af352 100644
--- a/biology/genpak/Makefile
+++ b/biology/genpak/Makefile
@@ -8,7 +8,7 @@
PORTNAME= genpak
PORTVERSION= 0.26
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= biology
MASTER_SITES= http://www.bioinformatics.org/genpak/download/
DISTNAME= gp-${PORTVERSION}
diff --git a/biology/gperiodic/Makefile b/biology/gperiodic/Makefile
index e19ccde0786d..a9b4caaa18ef 100644
--- a/biology/gperiodic/Makefile
+++ b/biology/gperiodic/Makefile
@@ -7,7 +7,7 @@
PORTNAME= gperiodic
PORTVERSION= 2.0.10
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology
MASTER_SITES= http://www.frantz.fi/software/
diff --git a/biology/p5-Bio-Das/Makefile b/biology/p5-Bio-Das/Makefile
index f3615d350a05..60b25424aa24 100644
--- a/biology/p5-Bio-Das/Makefile
+++ b/biology/p5-Bio-Das/Makefile
@@ -7,7 +7,7 @@
PORTNAME= Bio-Das
PORTVERSION= 1.17
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
diff --git a/biology/p5-Bio-Graphics/Makefile b/biology/p5-Bio-Graphics/Makefile
index 3f677f958879..b707af4fe801 100644
--- a/biology/p5-Bio-Graphics/Makefile
+++ b/biology/p5-Bio-Graphics/Makefile
@@ -7,6 +7,7 @@
PORTNAME= Bio-Graphics
PORTVERSION= 2.28
+PORTREVISION= 1
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index aa388d4bd42d..e73ec371b6af 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -7,6 +7,7 @@
PORTNAME= Bio-Phylo
PORTVERSION= 0.48
+PORTREVISION= 1
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
diff --git a/biology/p5-bioperl-run/Makefile b/biology/p5-bioperl-run/Makefile
index 4ee63b210a08..5414a95550f8 100644
--- a/biology/p5-bioperl-run/Makefile
+++ b/biology/p5-bioperl-run/Makefile
@@ -7,7 +7,7 @@
PORTNAME= bioperl-run
PORTVERSION= 1.6.1
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= biology perl5
MASTER_SITES= http://bioperl.org/DIST/ \
CPAN
diff --git a/biology/p5-bioperl/Makefile b/biology/p5-bioperl/Makefile
index 4830902d7cf9..b438bfd33096 100644
--- a/biology/p5-bioperl/Makefile
+++ b/biology/p5-bioperl/Makefile
@@ -7,7 +7,7 @@
PORTNAME= bioperl
PORTVERSION= 1.6.1
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= biology perl5
MASTER_SITES= http://bioperl.org/DIST/ \
CPAN
diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile
index 1a14cfef0ce9..18aa6c25c99d 100644
--- a/biology/povchem/Makefile
+++ b/biology/povchem/Makefile
@@ -7,7 +7,7 @@
PORTNAME= povchem
PORTVERSION= 1.0
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology graphics
MASTER_SITES= http://www.chemicalgraphics.com/paul/PC_Dist/v1.00/
DISTFILES= povchem.c \
diff --git a/biology/protomol/Makefile b/biology/protomol/Makefile
index 3fc6b7680a23..656012dfcaef 100644
--- a/biology/protomol/Makefile
+++ b/biology/protomol/Makefile
@@ -6,7 +6,7 @@
PORTNAME= protomol
PORTVERSION= 2.0.3
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology
MASTER_SITES= SF/${PORTNAME}/ProtoMol/${PORTVERSION}
DISTNAME= ${PORTNAME}-${PORTVERSION}-tar.gz
@@ -15,7 +15,7 @@ EXTRACT_SUFX= # nada
MAINTAINER= sangwoos@gmail.com
COMMENT= OO, component based, framework for molecular dynamics (MD) simulations
-LIB_DEPENDS= png.6:${PORTSDIR}/graphics/png \
+LIB_DEPENDS= png15:${PORTSDIR}/graphics/png \
jpeg.11:${PORTSDIR}/graphics/jpeg \
tiff.4:${PORTSDIR}/graphics/tiff
diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile
index 33484a174424..bc84b3a13fb3 100644
--- a/biology/pymol/Makefile
+++ b/biology/pymol/Makefile
@@ -6,6 +6,7 @@
PORTNAME= pymol
PORTVERSION= ${VERSION}.${SVNREVISION}
+PORTREVISION= 1
CATEGORIES= biology python
MASTER_SITES= ${MASTER_SITE_LOCAL:S|%SUBDIR%|maho/pymol|}
@@ -15,7 +16,7 @@ COMMENT= Free and Open-Source molecular modeling system
BUILD_DEPENDS= ${PYNUMERIC}
RUN_DEPENDS= ${PYNUMERIC} \
${PYTHON_SITELIBDIR}/Pmw:${PORTSDIR}/x11-toolkits/py-Pmw
-LIB_DEPENDS= png.6:${PORTSDIR}/graphics/png \
+LIB_DEPENDS= png15:${PORTSDIR}/graphics/png \
freetype.9:${PORTSDIR}/print/freetype2
VERSION= 1.5.0.1
diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile
index a56fb753de05..c7b4308075c7 100644
--- a/biology/seaview/Makefile
+++ b/biology/seaview/Makefile
@@ -8,7 +8,7 @@
PORTNAME= seaview
PORTVERSION= 2006.02.13
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= biology
MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/
DISTNAME= ${PORTNAME}${PORTVERSION:S/.//g}
diff --git a/biology/treeviewx/Makefile b/biology/treeviewx/Makefile
index 619f9f46d3ab..77929ed61c08 100644
--- a/biology/treeviewx/Makefile
+++ b/biology/treeviewx/Makefile
@@ -8,7 +8,7 @@
PORTNAME= treeviewx
PORTVERSION= 0.5.1
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology
MASTER_SITES= http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/${PORTVERSION:S/.1//}/
DISTNAME= tv-${PORTVERSION}
diff --git a/biology/xdrawchem/Makefile b/biology/xdrawchem/Makefile
index 7743131b468e..08b2c216aa3d 100644
--- a/biology/xdrawchem/Makefile
+++ b/biology/xdrawchem/Makefile
@@ -7,7 +7,7 @@
PORTNAME= xdrawchem
PORTVERSION= 1.9.9
-PORTREVISION= 9
+PORTREVISION= 10
CATEGORIES= biology
MASTER_SITES= SF
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-11 21:51:49 +0000