diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/ruby-bio/Makefile | 34 | ||||
| -rw-r--r-- | biology/ruby-bio/distinfo | 1 | ||||
| -rw-r--r-- | biology/ruby-bio/pkg-comment | 1 | ||||
| -rw-r--r-- | biology/ruby-bio/pkg-descr | 4 | ||||
| -rw-r--r-- | biology/ruby-bio/pkg-plist | 50 |
6 files changed, 91 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 852f40bb6dfe..cfe51b3bff48 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -37,6 +37,7 @@ SUBDIR += py-biopython SUBDIR += rasmol SUBDIR += recombine + SUBDIR += ruby-bio SUBDIR += seaview SUBDIR += seqio SUBDIR += sim4 diff --git a/biology/ruby-bio/Makefile b/biology/ruby-bio/Makefile new file mode 100644 index 000000000000..b21101ad859f --- /dev/null +++ b/biology/ruby-bio/Makefile @@ -0,0 +1,34 @@ +# New ports collection makefile for: BioRuby +# Date created: 24 October 2001 +# Whom: Akinori MUSHA aka knu <knu@idaemons.org> +# +# $FreeBSD$ +# + +PORTNAME= bio +PORTVERSION= 0.3.20011024 +CATEGORIES= biology ruby +MASTER_SITES= ftp://ftp.bioruby.org/bioruby/src/ +MASTER_SITE_SUBDIR= knu +PKGNAMEPREFIX= ${RUBY_PKGNAMEPREFIX} +DISTNAME= ${PORTNAME}ruby-${PORTVERSION:R}-${PORTVERSION:E} +EXTRACT_SUFX= .tgz +DIST_SUBDIR= ruby + +MAINTAINER= knu@FreeBSD.org + +USE_RUBY= yes +USE_RUBY_SETUP= yes +RUBY_SETUP= install.rb + +RUBY_SHEBANG_FILES= ${WRKSRC}/bin/dbget + +do-install: +.if !defined(NOPORTDOCS) + ${MKDIR} ${RUBY_EXAMPLESDIR}/${PORTNAME} + ${CP} -R ${WRKSRC}/sample/ ${RUBY_EXAMPLESDIR}/${PORTNAME}/ + ${MKDIR} ${RUBY_DOCDIR}/${PORTNAME} + ${CP} -R ${WRKSRC}/README ${RUBY_DOCDIR}/${PORTNAME}/ +.endif + +.include <bsd.port.mk> diff --git a/biology/ruby-bio/distinfo b/biology/ruby-bio/distinfo new file mode 100644 index 000000000000..dd75c7f93ab2 --- /dev/null +++ b/biology/ruby-bio/distinfo @@ -0,0 +1 @@ +MD5 (ruby/bioruby-0.3-20011024.tgz) = b33c40a43ee47236837dad280814384b diff --git a/biology/ruby-bio/pkg-comment b/biology/ruby-bio/pkg-comment new file mode 100644 index 000000000000..ea1c5bcb593d --- /dev/null +++ b/biology/ruby-bio/pkg-comment @@ -0,0 +1 @@ +Integrated environment for Bioinformatics written in Ruby diff --git a/biology/ruby-bio/pkg-descr b/biology/ruby-bio/pkg-descr new file mode 100644 index 000000000000..c5c49b2421ef --- /dev/null +++ b/biology/ruby-bio/pkg-descr @@ -0,0 +1,4 @@ +BioRuby project aims to implement integrated environment for +Bioinformatics by using Ruby. + +WWW: http://bioruby.org/index.html.en diff --git a/biology/ruby-bio/pkg-plist b/biology/ruby-bio/pkg-plist new file mode 100644 index 000000000000..42fbbfc5b0c7 --- /dev/null +++ b/biology/ruby-bio/pkg-plist @@ -0,0 +1,50 @@ +bin/dbget +%%RUBY_SITELIBDIR%%/bio.rb +%%RUBY_SITELIBDIR%%/bio/data/aa.rb +%%RUBY_SITELIBDIR%%/bio/data/codontable.rb +%%RUBY_SITELIBDIR%%/bio/data/keggorg.rb +%%RUBY_SITELIBDIR%%/bio/data/na.rb +%%RUBY_SITELIBDIR%%/bio/db.rb +%%RUBY_SITELIBDIR%%/bio/db/aaindex.rb +%%RUBY_SITELIBDIR%%/bio/db/ddbj.rb +%%RUBY_SITELIBDIR%%/bio/db/genbank.rb +%%RUBY_SITELIBDIR%%/bio/db/kegg/brite.rb +%%RUBY_SITELIBDIR%%/bio/db/kegg/cell.rb +%%RUBY_SITELIBDIR%%/bio/db/kegg/compound.rb +%%RUBY_SITELIBDIR%%/bio/db/kegg/enzyme.rb +%%RUBY_SITELIBDIR%%/bio/db/kegg/genes.rb +%%RUBY_SITELIBDIR%%/bio/db/kegg/genome.rb +%%RUBY_SITELIBDIR%%/bio/db/litdb.rb +%%RUBY_SITELIBDIR%%/bio/db/medline.rb +%%RUBY_SITELIBDIR%%/bio/db/prosite.rb +%%RUBY_SITELIBDIR%%/bio/db/refseq.rb +%%RUBY_SITELIBDIR%%/bio/db/transfac.rb +%%RUBY_SITELIBDIR%%/bio/io/dbget.rb +%%RUBY_SITELIBDIR%%/bio/io/pubmed.rb +%%RUBY_SITELIBDIR%%/bio/location.rb +%%RUBY_SITELIBDIR%%/bio/matrix.rb +%%RUBY_SITELIBDIR%%/bio/pathway.rb +%%RUBY_SITELIBDIR%%/bio/reference.rb +%%RUBY_SITELIBDIR%%/bio/sequence.rb +%%RUBY_SITELIBDIR%%/bio/util/fold.rb +@dirrm %%RUBY_SITELIBDIR%%/bio/data +@dirrm %%RUBY_SITELIBDIR%%/bio/db/kegg +@dirrm %%RUBY_SITELIBDIR%%/bio/db +@dirrm %%RUBY_SITELIBDIR%%/bio/io +@dirrm %%RUBY_SITELIBDIR%%/bio/util +@dirrm %%RUBY_SITELIBDIR%%/bio +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/fasta2tab.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/fsplit.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/gb2fasta.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/gb2tab.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genes2nuc.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genes2pep.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genes2tab.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genome2tab.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/gt2fasta.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/ssearch2tab.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/tfastx2tab.rb +%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/vs-genes.rb +%%PORTDOCS%%@dirrm %%RUBY_EXAMPLESDIR%%/bio +%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/README +%%PORTDOCS%%@dirrm %%RUBY_DOCDIR%%/bio |