diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/gff2ps/Makefile | 32 | ||||
| -rw-r--r-- | biology/gff2ps/distinfo | 1 | ||||
| -rw-r--r-- | biology/gff2ps/pkg-comment | 1 | ||||
| -rw-r--r-- | biology/gff2ps/pkg-descr | 6 | ||||
| -rw-r--r-- | biology/gff2ps/pkg-plist | 1 |
6 files changed, 42 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 982d82bce3dd..d07fc1553357 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -15,6 +15,7 @@ SUBDIR += fluctuate SUBDIR += gaussian98 SUBDIR += genpak + SUBDIR += gff2ps SUBDIR += gperiodic SUBDIR += grappa SUBDIR += hmmer diff --git a/biology/gff2ps/Makefile b/biology/gff2ps/Makefile new file mode 100644 index 000000000000..01875134bffc --- /dev/null +++ b/biology/gff2ps/Makefile @@ -0,0 +1,32 @@ +# New ports collection makefile for: gff2ps +# Date created: 17 December 2001 +# Whom: Camson Huynh <chuynh@biolateral.com.au> +# +# $FreeBSD$ +# + +PORTNAME= gff2ps +PORTVERSION= 0.97b +CATEGORIES= biology +MASTER_SITES= ftp://www1.imim.es/pub/gff_tools/gff2ps/ +DISTNAME= gff2ps_v${PORTVERSION} +EXTRACT_SUFX= .gz + +MAINTAINER= chuynh@biolateral.com.au + +RUN_DEPENDS= gawk:${PORTSDIR}/lang/gawk \ + bash:${PORTSDIR}/shells/bash2 + +PATCH_WRKSRC= ${WRKDIR} +EXTRACT_AFTER_ARGS= > ${WRKDIR}/gff2ps + +NO_BUILD= yes + +post-patch: + @${PERL} -pi -e 's,^#!/bin/bash,#!${LOCALBASE}/bin/bash,; \ + s,/usr/local/bin/gawk,${LOCALBASE}/bin/gawk,' ${WRKDIR}/gff2ps + +do-install: + ${INSTALL_SCRIPT} ${WRKDIR}/gff2ps ${PREFIX}/bin + +.include <bsd.port.mk> diff --git a/biology/gff2ps/distinfo b/biology/gff2ps/distinfo new file mode 100644 index 000000000000..332bbf0971a8 --- /dev/null +++ b/biology/gff2ps/distinfo @@ -0,0 +1 @@ +MD5 (gff2ps_v0.97b.gz) = bc200821ff1a43d6ec7e43905520d902 diff --git a/biology/gff2ps/pkg-comment b/biology/gff2ps/pkg-comment new file mode 100644 index 000000000000..6b164c3b4a56 --- /dev/null +++ b/biology/gff2ps/pkg-comment @@ -0,0 +1 @@ +Converts gff-formated genomic data-sets to PostScript diff --git a/biology/gff2ps/pkg-descr b/biology/gff2ps/pkg-descr new file mode 100644 index 000000000000..0561026915e5 --- /dev/null +++ b/biology/gff2ps/pkg-descr @@ -0,0 +1,6 @@ +gff2ps is a script program developed with the aim of converting gff-formatted +records into high quality one-dimensional plots in PostScript. Such plots maybe +useful for comparing genomic structures and to visualizing outputs from genome +annotation programs. + +WWW: http://www1.imim.es/~jabril/ diff --git a/biology/gff2ps/pkg-plist b/biology/gff2ps/pkg-plist new file mode 100644 index 000000000000..c1d1c0e168ce --- /dev/null +++ b/biology/gff2ps/pkg-plist @@ -0,0 +1 @@ +bin/gff2ps |