diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/biojava/Makefile | 2 | ||||
| -rw-r--r-- | biology/blat/Makefile | 3 | ||||
| -rw-r--r-- | biology/libsbml/Makefile | 3 | ||||
| -rw-r--r-- | biology/plink/Makefile | 3 | ||||
| -rw-r--r-- | biology/seqan/Makefile | 4 |
5 files changed, 5 insertions, 10 deletions
diff --git a/biology/biojava/Makefile b/biology/biojava/Makefile index e1069a32ffa7..3de945e000cb 100644 --- a/biology/biojava/Makefile +++ b/biology/biojava/Makefile @@ -12,7 +12,7 @@ EXTRACT_SUFX= .jar MAINTAINER= wenheping@gmail.com COMMENT= Open-source Java tools for processing biological data -USE_ZIP= yes +USES= zip USE_JAVA= yes JAVA_VERSION= 1.6+ USE_ANT= yes diff --git a/biology/blat/Makefile b/biology/blat/Makefile index c9c6ce6bc03b..a279e5ded906 100644 --- a/biology/blat/Makefile +++ b/biology/blat/Makefile @@ -7,7 +7,6 @@ CATEGORIES= biology MASTER_SITES= http://hgwdev.cse.ucsc.edu/~kent/src/ \ http://users.soe.ucsc.edu/~kent/src/ DISTNAME= ${PORTNAME}Src${PORTVERSION} -EXTRACT_SUFX= .zip MAINTAINER= ports@FreeBSD.org COMMENT= Fast tool for local sequence similarity searches @@ -18,7 +17,7 @@ OPTIONS_DEFINE= DOCS WRKSRC= ${WRKDIR}/${PORTNAME}Src -USES= gmake +USES= gmake zip USE_OPENSSL= yes MAKEFILE= makefile MAKE_ENV= MACHTYPE="${ARCH}" HOME="${WRKSRC}/${BINDIR}" STRIP="${TRUE}" diff --git a/biology/libsbml/Makefile b/biology/libsbml/Makefile index 9df43949a9bf..8440662751b9 100644 --- a/biology/libsbml/Makefile +++ b/biology/libsbml/Makefile @@ -15,8 +15,7 @@ LIB_DEPENDS= libxml2.so:${PORTSDIR}/textproc/libxml2 OPTIONS_DEFINE= PYTHON RUBY -USE_GMAKE= yes -USE_ZIP= yes +USES= gmake zip USE_GCC= any GNU_CONFIGURE= yes USE_LDCONFIG= yes diff --git a/biology/plink/Makefile b/biology/plink/Makefile index a9711e69d1b5..c74534c61971 100644 --- a/biology/plink/Makefile +++ b/biology/plink/Makefile @@ -7,7 +7,6 @@ PORTREVISION= 2 CATEGORIES= biology science MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/ DISTNAME= ${PORTNAME}-${PORTVERSION}-src -EXTRACT_SUFX= .zip MAINTAINER= jwbacon@tds.net COMMENT= Whole genome association analysis toolset @@ -17,7 +16,7 @@ LICENSE= GPLv2 LIB_DEPENDS= liblapack.so:${PORTSDIR}/math/lapack # We need Fortran LDFLAGS to link with Lapack. -USES= fortran gmake +USES= fortran gmake zip PLIST_FILES= bin/plink diff --git a/biology/seqan/Makefile b/biology/seqan/Makefile index d6111ab720bf..1f1472494816 100644 --- a/biology/seqan/Makefile +++ b/biology/seqan/Makefile @@ -16,9 +16,7 @@ LICENSE_COMB= multi LICENSE_FILE_BSD=${WRKSRC}/seqan/LICENSE LICENSE_FILE_GPLv3=${WRKSRC}/apps/LICENSE -USE_ZIP= yes - -USES= cmake:outsource +USES= cmake:outsource zip CMAKE_SOURCE_PATH=${WRKSRC}/cmake USE_PYTHON_BUILD=yes MAKE_JOB_SAFE= yes |