aboutsummaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
Diffstat (limited to 'biology')
-rw-r--r--biology/p5-Bio-MAGETAB/Makefile61
-rw-r--r--biology/p5-Bio-MAGETAB/distinfo4
-rw-r--r--biology/p5-Bio-MAGETAB/pkg-plist57
3 files changed, 60 insertions, 62 deletions
diff --git a/biology/p5-Bio-MAGETAB/Makefile b/biology/p5-Bio-MAGETAB/Makefile
index 8b08469ad962..c2dd00950b05 100644
--- a/biology/p5-Bio-MAGETAB/Makefile
+++ b/biology/p5-Bio-MAGETAB/Makefile
@@ -2,7 +2,7 @@
# $FreeBSD$
PORTNAME= Bio-MAGETAB
-PORTVERSION= 1.27
+PORTVERSION= 1.28
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
@@ -29,65 +29,6 @@ TEST_DEPENDS= p5-Test-Exception>=0.26:${PORTSDIR}/devel/p5-Test-Exception
USES= perl5
USE_PERL5= configure
-MAN3= Bio::MAGETAB.3 \
- Bio::MAGETAB::ArrayDesign.3 \
- Bio::MAGETAB::Assay.3 \
- Bio::MAGETAB::BaseClass.3 \
- Bio::MAGETAB::Comment.3 \
- Bio::MAGETAB::CompositeElement.3 \
- Bio::MAGETAB::Contact.3 \
- Bio::MAGETAB::ControlledTerm.3 \
- Bio::MAGETAB::Data.3 \
- Bio::MAGETAB::DataAcquisition.3 \
- Bio::MAGETAB::DataFile.3 \
- Bio::MAGETAB::DataMatrix.3 \
- Bio::MAGETAB::DatabaseEntry.3 \
- Bio::MAGETAB::DesignElement.3 \
- Bio::MAGETAB::Edge.3 \
- Bio::MAGETAB::Event.3 \
- Bio::MAGETAB::Extract.3 \
- Bio::MAGETAB::Factor.3 \
- Bio::MAGETAB::FactorValue.3 \
- Bio::MAGETAB::Feature.3 \
- Bio::MAGETAB::Investigation.3 \
- Bio::MAGETAB::LabeledExtract.3 \
- Bio::MAGETAB::Material.3 \
- Bio::MAGETAB::MatrixColumn.3 \
- Bio::MAGETAB::MatrixRow.3 \
- Bio::MAGETAB::Measurement.3 \
- Bio::MAGETAB::Node.3 \
- Bio::MAGETAB::Normalization.3 \
- Bio::MAGETAB::ParameterValue.3 \
- Bio::MAGETAB::Protocol.3 \
- Bio::MAGETAB::ProtocolApplication.3 \
- Bio::MAGETAB::ProtocolParameter.3 \
- Bio::MAGETAB::Publication.3 \
- Bio::MAGETAB::Reporter.3 \
- Bio::MAGETAB::SDRF.3 \
- Bio::MAGETAB::SDRFRow.3 \
- Bio::MAGETAB::Sample.3 \
- Bio::MAGETAB::Source.3 \
- Bio::MAGETAB::TermSource.3 \
- Bio::MAGETAB::Types.3 \
- Bio::MAGETAB::Util::Builder.3 \
- Bio::MAGETAB::Util::DBLoader.3 \
- Bio::MAGETAB::Util::Persistence.3 \
- Bio::MAGETAB::Util::Reader.3 \
- Bio::MAGETAB::Util::Reader::ADF.3 \
- Bio::MAGETAB::Util::Reader::DataMatrix.3 \
- Bio::MAGETAB::Util::Reader::IDF.3 \
- Bio::MAGETAB::Util::Reader::SDRF.3 \
- Bio::MAGETAB::Util::Reader::Tabfile.3 \
- Bio::MAGETAB::Util::Reader::TagValueFile.3 \
- Bio::MAGETAB::Util::RewriteAE.3 \
- Bio::MAGETAB::Util::Writer.3 \
- Bio::MAGETAB::Util::Writer::ADF.3 \
- Bio::MAGETAB::Util::Writer::GraphViz.3 \
- Bio::MAGETAB::Util::Writer::IDF.3 \
- Bio::MAGETAB::Util::Writer::SDRF.3 \
- Bio::MAGETAB::Util::Writer::Tabfile.3
-
-NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e '/^auto_install;/d' ${WRKSRC}/Makefile.PL
diff --git a/biology/p5-Bio-MAGETAB/distinfo b/biology/p5-Bio-MAGETAB/distinfo
index c78d2f45471e..ff57e2a15045 100644
--- a/biology/p5-Bio-MAGETAB/distinfo
+++ b/biology/p5-Bio-MAGETAB/distinfo
@@ -1,2 +1,2 @@
-SHA256 (Bio-MAGETAB-1.27.tar.gz) = 46017303ce51f8ba749d363cd763792273df96602d28f1d2de5c2947530cdb4d
-SIZE (Bio-MAGETAB-1.27.tar.gz) = 254374
+SHA256 (Bio-MAGETAB-1.28.tar.gz) = 75e0e52300400bb6e73d2593ac29ef87fcf28653c0a7a039c2c937abcedb5a08
+SIZE (Bio-MAGETAB-1.28.tar.gz) = 260154
diff --git a/biology/p5-Bio-MAGETAB/pkg-plist b/biology/p5-Bio-MAGETAB/pkg-plist
index b67a1e5aa664..e902096a8b7a 100644
--- a/biology/p5-Bio-MAGETAB/pkg-plist
+++ b/biology/p5-Bio-MAGETAB/pkg-plist
@@ -60,6 +60,63 @@ bin/unload_magetab_namespace.pl
%%SITE_PERL%%/Bio/MAGETAB/FactorValue.pm
%%SITE_PERL%%/Bio/MAGETAB/DataMatrix.pm
%%SITE_PERL%%/Bio/MAGETAB.pm
+%%PERL5_MAN3%%/Bio::MAGETAB.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::ArrayDesign.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Assay.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::BaseClass.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Comment.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::CompositeElement.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Contact.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::ControlledTerm.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Data.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::DataAcquisition.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::DataFile.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::DataMatrix.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::DatabaseEntry.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::DesignElement.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Edge.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Event.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Extract.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Factor.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::FactorValue.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Feature.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Investigation.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::LabeledExtract.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Material.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::MatrixColumn.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::MatrixRow.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Measurement.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Node.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Normalization.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::ParameterValue.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Protocol.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::ProtocolApplication.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::ProtocolParameter.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Publication.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Reporter.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::SDRF.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::SDRFRow.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Sample.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Source.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::TermSource.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Types.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Builder.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::DBLoader.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Persistence.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::ADF.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::DataMatrix.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::IDF.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::SDRF.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::Tabfile.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Reader::TagValueFile.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::RewriteAE.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::ADF.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::GraphViz.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::IDF.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::SDRF.3.gz
+%%PERL5_MAN3%%/Bio::MAGETAB::Util::Writer::Tabfile.3.gz
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/MAGETAB
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@dirrm %%SITE_PERL%%/Bio/MAGETAB/Util/Reader
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-19 11:15:12 +0000