diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/embassy/Makefile | 34 | ||||
| -rw-r--r-- | biology/embassy/distinfo | 93 | ||||
| -rw-r--r-- | biology/embassy/pkg-plist | 717 |
3 files changed, 438 insertions, 406 deletions
diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile index 6ded613791c2..9a7dd461fbf3 100644 --- a/biology/embassy/Makefile +++ b/biology/embassy/Makefile @@ -7,7 +7,7 @@ # PORTNAME= embassy -PORTVERSION= 5.0.0 +PORTVERSION= 6.0.0 CATEGORIES= biology MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/ \ ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/ @@ -16,9 +16,7 @@ DIST_SUBDIR= emboss MAINTAINER= fernan@iib.unsam.edu.ar COMMENT= A collection of contributed EMBOSS applications -LIB_DEPENDS= nucleus.5:${PORTSDIR}/biology/emboss - -BROKEN= does not compile +LIB_DEPENDS= nucleus.6:${PORTSDIR}/biology/emboss PREFIX?= ${LOCALBASE}/emboss NO_MTREE= yes @@ -38,34 +36,40 @@ OPTIONS= DOMAINATRIX "Protein domain apps" on \ EMNU "EMBOSS simple menu" on \ ESIM4 "Align cDNA/EST to genome" on \ HMMER "HMM alignment and searches" on \ - MEME "Motif detection" on \ + MEMENEW "Motif detection" on \ MSE "A multiple sequence screen editor" on \ MYEMBOSS "Examples for developers of EMBOSS apps" on \ - PHYLIP "Phylogeny inference" on \ + PHYLIPNEW "Phylogeny inference" on \ TOPO "Transmembrane display" on \ - VIENNA "RNA folding" on + VIENNA "RNA folding" on \ + MIRA "Whole Genome shotgun and EST assembler" on \ + IPRSCAN "InterPro scan" on \ + CBSTOOLS "CBS Tools" on -CONFIGURE_ENV+= CPPFLAGS="-I${PREFIX}/include -I${LOCALBASE}/include" \ - LDFLAGS="-L${PREFIX}/lib -L${LOCALBASE}/lib" +CONFIGURE_ENV+= CPPFLAGS="-I${PREFIX}/include -I${LOCALBASE}/include -I${LOCALBASE}/emboss/include" \ + LDFLAGS="-L${PREFIX}/lib -L${LOCALBASE}/lib -L${LOCALBASE}/emboss/lib" EMBASSY_WRKDIR= ${WRKSRC}/EMBASSY DOMAINATRIX_VERSION= 0.1.0 EMNU_VERSION= 1.05 ESIM4_VERSION= 1.0.0 HMMER_VERSION= 2.3.2 -MEME_VERSION= 0.1.0 +MEMENEW_VERSION= 0.1.0 MSE_VERSION= 1.0.0 TOPO_VERSION= 1.0.0 -PHYLIP_VERSION= 3.6b +PHYLIPNEW_VERSION= 3.67 DOMALIGN_VERSION= 0.1.0 DOMSEARCH_VERSION= 0.1.0 SIGNATURE_VERSION= 0.1.0 STRUCTURE_VERSION= 0.1.0 -MYEMBOSS_VERSION= 3.0.0 -VIENNA_VERSION= 1.6 -EMBASSY_APPS= DOMAINATRIX EMNU ESIM4 HMMER MEME MSE PHYLIP \ +MYEMBOSS_VERSION= 6.0.0 +VIENNA_VERSION= 1.7.2 +MIRA_VERSION= 2.8.2 +IPRSCAN_VERSION= 4.3.1 +CBSTOOLS_VERSION= 1.0.0 +EMBASSY_APPS= DOMAINATRIX EMNU ESIM4 HMMER MEMENEW MSE PHYLIPNEW \ TOPO DOMALIGN DOMSEARCH SIGNATURE STRUCTURE MYEMBOSS \ - VIENNA + VIENNA MIRA IPRSCAN CBSTOOLS .include <bsd.port.pre.mk> diff --git a/biology/embassy/distinfo b/biology/embassy/distinfo index 8ea850198702..d4ab628f009b 100644 --- a/biology/embassy/distinfo +++ b/biology/embassy/distinfo @@ -1,42 +1,51 @@ -MD5 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 0be3c59550e1e22924ea2540b11af275 -SHA256 (emboss/DOMAINATRIX-0.1.0.tar.gz) = b81fde3ab329ab75482b341568ef2965d99803765438f3825688a0d2abc05ca6 -SIZE (emboss/DOMAINATRIX-0.1.0.tar.gz) = 420051 -MD5 (emboss/EMNU-1.05.tar.gz) = 64d8b9c2cd1a566aebb3355eb684bd35 -SHA256 (emboss/EMNU-1.05.tar.gz) = 56a55f336b0083ecfd2fd2dae0613f46e802eacb3214c16fc1966e6516795b95 -SIZE (emboss/EMNU-1.05.tar.gz) = 389665 -MD5 (emboss/ESIM4-1.0.0.tar.gz) = ee65d0da0f2d75959f370b13f2218c1c -SHA256 (emboss/ESIM4-1.0.0.tar.gz) = eee1cc8fef40e19fab74b16f1c1cb0883a49561eb9fdc2075f428085c6722bda -SIZE (emboss/ESIM4-1.0.0.tar.gz) = 431329 -MD5 (emboss/HMMER-2.3.2.tar.gz) = 3aa5707db81854f2674bf27aaeb1362e -SHA256 (emboss/HMMER-2.3.2.tar.gz) = 31bbcca1f71b82170a65c4438f9cb9f1dfe3d4e066037a852060b010e3e39b5b -SIZE (emboss/HMMER-2.3.2.tar.gz) = 565223 -MD5 (emboss/MEME-0.1.0.tar.gz) = d304f3b8a8e15af4dfa7b295655d80ec -SHA256 (emboss/MEME-0.1.0.tar.gz) = ed4c02010af036515203661c28776b5e773e77eccad59990b7ac1410399d45ef -SIZE (emboss/MEME-0.1.0.tar.gz) = 448413 -MD5 (emboss/MSE-1.0.0.tar.gz) = 3978a06e3651104f622a5834523c45de -SHA256 (emboss/MSE-1.0.0.tar.gz) = e35560310ece8bb2dec7eeb88e99f39f313bf7366afc445e3b074b687e7f36b2 -SIZE (emboss/MSE-1.0.0.tar.gz) = 445013 -MD5 (emboss/PHYLIP-3.6b.tar.gz) = 760a90bea49872aba95fd7dd2b67570c -SHA256 (emboss/PHYLIP-3.6b.tar.gz) = c2397937f4b827844192a33b31f13271a3560c81045543d912a9c28eb6ad894f -SIZE (emboss/PHYLIP-3.6b.tar.gz) = 1594433 -MD5 (emboss/TOPO-1.0.0.tar.gz) = d45602a1b1f22da50a775c41df5fe672 -SHA256 (emboss/TOPO-1.0.0.tar.gz) = ed1921e92d1bbd9fcc16ab36f2fcbafca9e60cc0d4b4fd1da77660ffd3e7b2f2 -SIZE (emboss/TOPO-1.0.0.tar.gz) = 379381 -MD5 (emboss/DOMALIGN-0.1.0.tar.gz) = e5d004c1223116abaebb6657ae4a80fa -SHA256 (emboss/DOMALIGN-0.1.0.tar.gz) = aa61cfc6da3cc478dd7f476537cdc6d966b00b90e2adedc709eb75e39e840c5c -SIZE (emboss/DOMALIGN-0.1.0.tar.gz) = 460530 -MD5 (emboss/DOMSEARCH-0.1.0.tar.gz) = 778ab15bce09a6440fc6859b3a27157d -SHA256 (emboss/DOMSEARCH-0.1.0.tar.gz) = 23e069161ec56df5eab5fc491ca3493c056cfee42f2e05f1b5ef258498792a87 -SIZE (emboss/DOMSEARCH-0.1.0.tar.gz) = 469776 -MD5 (emboss/SIGNATURE-0.1.0.tar.gz) = 26deae308cc5aac3dee5dd03df2ae9e8 -SHA256 (emboss/SIGNATURE-0.1.0.tar.gz) = 9b0529befdbe5d56b3370cfffe0a4b4cc523f350b50ddd4a61dd24776a1770e8 -SIZE (emboss/SIGNATURE-0.1.0.tar.gz) = 573992 -MD5 (emboss/STRUCTURE-0.1.0.tar.gz) = 6736b4741b15d4cba488a5422fcfaee1 -SHA256 (emboss/STRUCTURE-0.1.0.tar.gz) = 3ed8ea5373232cd80302ff3b8727838b4de2f6b39aa263ab9530bbbe71d730c1 -SIZE (emboss/STRUCTURE-0.1.0.tar.gz) = 530874 -MD5 (emboss/MYEMBOSS-3.0.0.tar.gz) = 9c3d6ea80166f62cd6ee63dfcb7e57a4 -SHA256 (emboss/MYEMBOSS-3.0.0.tar.gz) = dc21b1772c2d76ed1c717eba6f8443b86cdf2e3cbcf71e056cdb9723138e4440 -SIZE (emboss/MYEMBOSS-3.0.0.tar.gz) = 354179 -MD5 (emboss/VIENNA-1.6.tar.gz) = 282ed7ac9c1741160fcb1e8d48539311 -SHA256 (emboss/VIENNA-1.6.tar.gz) = 04c4a57486e23c2cc8ef396d9012c396519b2ab1b13b2500199e6457a34cfa58 -SIZE (emboss/VIENNA-1.6.tar.gz) = 635638 +MD5 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 0f5211a2ee754b4f32332beaf660964c +SHA256 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 7596e76b79f19d77e27b8ea8a75a3e1ba4c806aa548cb9675f23e2bb434a42b1 +SIZE (emboss/DOMAINATRIX-0.1.0.tar.gz) = 420983 +MD5 (emboss/EMNU-1.05.tar.gz) = df6c267bb12e3ecd19bffe5f678bfdb3 +SHA256 (emboss/EMNU-1.05.tar.gz) = 2f58621cc7151f813ce608dcd5b3505fc84af882c778fe28167508d6851dc333 +SIZE (emboss/EMNU-1.05.tar.gz) = 390229 +MD5 (emboss/ESIM4-1.0.0.tar.gz) = 36d9e1dc37004ff4189f583d8d3b037b +SHA256 (emboss/ESIM4-1.0.0.tar.gz) = 219b3541e2a67d31fd62140c2c9c2b41e2d3d814dec6aaf691f764e337917577 +SIZE (emboss/ESIM4-1.0.0.tar.gz) = 431898 +MD5 (emboss/HMMER-2.3.2.tar.gz) = edc18f5515f1fd712b7d2accf58a9a2e +SHA256 (emboss/HMMER-2.3.2.tar.gz) = 9b27f2b7a9059b017e3bd3d31de08f6fbf7d49c3e025d73abd83ff0567732258 +SIZE (emboss/HMMER-2.3.2.tar.gz) = 565686 +MD5 (emboss/MEMENEW-0.1.0.tar.gz) = 72f4a3b8544aa1603301b7b83692a133 +SHA256 (emboss/MEMENEW-0.1.0.tar.gz) = 5411d1445feb1b5e460e598a9d7e670a4357fe7aa350d96531b1aa9c79fab636 +SIZE (emboss/MEMENEW-0.1.0.tar.gz) = 450102 +MD5 (emboss/MSE-1.0.0.tar.gz) = 3122000020565077a421a53cf114127a +SHA256 (emboss/MSE-1.0.0.tar.gz) = 9e3688ff3514b7ea6cf104fbd2a2e611fe726fb7ac4bebab6f3c103f05c08d90 +SIZE (emboss/MSE-1.0.0.tar.gz) = 445562 +MD5 (emboss/PHYLIPNEW-3.67.tar.gz) = cbd539fb39673cc362d827fa731f03f3 +SHA256 (emboss/PHYLIPNEW-3.67.tar.gz) = efbfdbff0109c62823caf13f20cb6462f54371d55899fcbbe29240e503584945 +SIZE (emboss/PHYLIPNEW-3.67.tar.gz) = 1624802 +MD5 (emboss/TOPO-1.0.0.tar.gz) = 03ea6cf067db1f673ec27195076b0e4a +SHA256 (emboss/TOPO-1.0.0.tar.gz) = a7fd297c5e27becedd4aafd272123a176581c68b90de872fb3cb46356333cc16 +SIZE (emboss/TOPO-1.0.0.tar.gz) = 379929 +MD5 (emboss/DOMALIGN-0.1.0.tar.gz) = 58dff4731762bef6248b163bf2d160bd +SHA256 (emboss/DOMALIGN-0.1.0.tar.gz) = c448dc461b36e299c6338f25c102de2388cc33515eae8fd1dc7097920efa409a +SIZE (emboss/DOMALIGN-0.1.0.tar.gz) = 462156 +MD5 (emboss/DOMSEARCH-0.1.0.tar.gz) = e862f6b4f02f4640f9729862efab5a0a +SHA256 (emboss/DOMSEARCH-0.1.0.tar.gz) = fb34c1b2f668f89abe6912fe75e9828c53802820753aa8a1b952f37894939c95 +SIZE (emboss/DOMSEARCH-0.1.0.tar.gz) = 470537 +MD5 (emboss/SIGNATURE-0.1.0.tar.gz) = cc7c707c41156b6681ddca7b76ff009d +SHA256 (emboss/SIGNATURE-0.1.0.tar.gz) = 0966e165516448e214275e3cafcca91b9bb83d96264d2bf205aace1380138d2f +SIZE (emboss/SIGNATURE-0.1.0.tar.gz) = 574940 +MD5 (emboss/STRUCTURE-0.1.0.tar.gz) = 7df40530fd15f441c531f5dbd5c10fff +SHA256 (emboss/STRUCTURE-0.1.0.tar.gz) = cd8b17947fe764e830bd14887deb85a5f196f490d25b9c6408aaca0c1baecd23 +SIZE (emboss/STRUCTURE-0.1.0.tar.gz) = 532035 +MD5 (emboss/MYEMBOSS-6.0.0.tar.gz) = 5f51d49558131a518ac40220dd7fa0c3 +SHA256 (emboss/MYEMBOSS-6.0.0.tar.gz) = 7f24d800044b0957006c8550de74ca621301f6de1c724980fe90e8a6093b6048 +SIZE (emboss/MYEMBOSS-6.0.0.tar.gz) = 343305 +MD5 (emboss/VIENNA-1.7.2.tar.gz) = f6ec2092de41dafdb6cf302dd5412498 +SHA256 (emboss/VIENNA-1.7.2.tar.gz) = 7bed50f9992aec250f974f5c5fd9a42d49c24f05e0e9fac88bb94b2d76be25db +SIZE (emboss/VIENNA-1.7.2.tar.gz) = 682200 +MD5 (emboss/MIRA-2.8.2.tar.gz) = c74a63e10ce983c39389593693c851e7 +SHA256 (emboss/MIRA-2.8.2.tar.gz) = 33d756bd50fe26c04aff862f34230feaad831cbe538096e4d8e5c8e0b6784fe1 +SIZE (emboss/MIRA-2.8.2.tar.gz) = 365566 +MD5 (emboss/IPRSCAN-4.3.1.tar.gz) = 8164a9b8392d29ba3bc723c1bc5da2ff +SHA256 (emboss/IPRSCAN-4.3.1.tar.gz) = df0bdd33ea6f279ed018f4a22e686cc14ff0e9f65342177b3b9dbb2951c3636a +SIZE (emboss/IPRSCAN-4.3.1.tar.gz) = 339939 +MD5 (emboss/CBSTOOLS-1.0.0.tar.gz) = 9352c924a8c86233fbf6dc80c58cc481 +SHA256 (emboss/CBSTOOLS-1.0.0.tar.gz) = b61b6c19d18dd3a35eef248feb92ee68bcee0e9fc99af5185deee04a17fa3693 +SIZE (emboss/CBSTOOLS-1.0.0.tar.gz) = 343812 diff --git a/biology/embassy/pkg-plist b/biology/embassy/pkg-plist index e90801ea7428..3badc2e6a7d9 100644 --- a/biology/embassy/pkg-plist +++ b/biology/embassy/pkg-plist @@ -1,10 +1,3 @@ -%%PLIST_DOMAINATRIX%%bin/cathparse -%%PLIST_DOMAINATRIX%%bin/domainnr -%%PLIST_DOMAINATRIX%%bin/domainreso -%%PLIST_DOMAINATRIX%%bin/domainseqs -%%PLIST_DOMAINATRIX%%bin/domainsse -%%PLIST_DOMAINATRIX%%bin/scopparse -%%PLIST_DOMAINATRIX%%bin/ssematch %%PLIST_DOMAINATRIX%%share/EMBOSS/acd/cathparse.acd %%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainnr.acd %%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainreso.acd @@ -12,6 +5,13 @@ %%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainsse.acd %%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scopparse.acd %%PLIST_DOMAINATRIX%%share/EMBOSS/acd/ssematch.acd +%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/cathparse.txt +%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainnr.txt +%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainreso.txt +%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainseqs.txt +%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainsse.txt +%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/scopparse.txt +%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/ssematch.txt %%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/index.html %%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/cathparse.html %%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/domainnr.html @@ -20,295 +20,54 @@ %%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/domainsse.html %%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/scopparse.html %%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/ssematch.html -%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/cathparse.txt -%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainnr.txt -%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainreso.txt -%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainseqs.txt -%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainsse.txt -%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/scopparse.txt -%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/ssematch.txt -%%PLIST_DOMALIGN%%bin/allversusall -%%PLIST_DOMALIGN%%bin/domainalign -%%PLIST_DOMALIGN%%bin/domainrep -%%PLIST_DOMALIGN%%bin/seqalign +%%PLIST_DOMAINATRIX%%bin/cathparse +%%PLIST_DOMAINATRIX%%bin/domainnr +%%PLIST_DOMAINATRIX%%bin/domainreso +%%PLIST_DOMAINATRIX%%bin/domainseqs +%%PLIST_DOMAINATRIX%%bin/domainsse +%%PLIST_DOMAINATRIX%%bin/scopparse +%%PLIST_DOMAINATRIX%%bin/ssematch +%%PLIST_DOMAINATRIX%%@dirrm share/EMBOSS/doc/html/embassy/domainatrix %%PLIST_DOMALIGN%%share/EMBOSS/acd/allversusall.acd %%PLIST_DOMALIGN%%share/EMBOSS/acd/domainalign.acd %%PLIST_DOMALIGN%%share/EMBOSS/acd/domainrep.acd %%PLIST_DOMALIGN%%share/EMBOSS/acd/seqalign.acd +%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/allversusall.txt +%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/domainalign.txt +%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/domainrep.txt +%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/seqalign.txt %%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/index.html %%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/allversusall.html %%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/domainalign.html %%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/domainrep.html %%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/seqalign.html -%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/allversusall.txt -%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/domainalign.txt -%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/domainrep.txt -%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/seqalign.txt -%%PLIST_DOMSEARCH%%bin/seqnr -%%PLIST_DOMSEARCH%%bin/seqsearch -%%PLIST_DOMSEARCH%%bin/seqfraggle -%%PLIST_DOMSEARCH%%bin/seqsort -%%PLIST_DOMSEARCH%%bin/seqwords +%%PLIST_DOMALIGN%%@dirrm share/EMBOSS/doc/html/embassy/domalign +%%PLIST_DOMALIGN%%bin/allversusall +%%PLIST_DOMALIGN%%bin/domainalign +%%PLIST_DOMALIGN%%bin/domainrep +%%PLIST_DOMALIGN%%bin/seqalign %%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqnr.acd %%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqsearch.acd %%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqfraggle.acd %%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqsort.acd %%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqwords.acd +%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqfraggle.txt +%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqnr.txt +%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqsearch.txt +%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqsort.txt +%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqwords.txt %%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/index.html %%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqfraggle.html %%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqnr.html %%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqsearch.html %%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqsort.html %%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqwords.html -%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqfraggle.txt -%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqnr.txt -%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqsearch.txt -%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqsort.txt -%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqwords.txt -%%PLIST_EMNU%%bin/emnu -%%PLIST_EMNU%%share/EMBOSS/acd/emnu.acd -%%PLIST_EMNU%%share/EMBOSS/doc/html/embassy/emnu/index.html -%%PLIST_EMNU%%share/EMBOSS/doc/html/embassy/emnu/emnu.html -%%PLIST_EMNU%%share/EMBOSS/doc/programs/text/emnu.txt -%%PLIST_ESIM4%%bin/esim4 -%%PLIST_ESIM4%%share/EMBOSS/acd/esim4.acd -%%PLIST_ESIM4%%share/EMBOSS/doc/html/embassy/esim4/index.html -%%PLIST_ESIM4%%share/EMBOSS/doc/html/embassy/esim4/esim4.html -%%PLIST_ESIM4%%share/EMBOSS/doc/programs/text/esim4.txt -%%PLIST_HMMER%%bin/ehmmcalibrate -%%PLIST_HMMER%%bin/ehmmconvert -%%PLIST_HMMER%%bin/ehmmemit -%%PLIST_HMMER%%bin/ehmmfetch -%%PLIST_HMMER%%bin/ehmmindex -%%PLIST_HMMER%%bin/ehmmbuild -%%PLIST_HMMER%%bin/ehmmalign -%%PLIST_HMMER%%bin/ehmmpfam -%%PLIST_HMMER%%bin/ehmmsearch -%%PLIST_HMMER%%share/EMBOSS/acd/ehmmcalibrate.acd -%%PLIST_HMMER%%share/EMBOSS/acd/ehmmconvert.acd -%%PLIST_HMMER%%share/EMBOSS/acd/ehmmemit.acd -%%PLIST_HMMER%%share/EMBOSS/acd/ehmmfetch.acd -%%PLIST_HMMER%%share/EMBOSS/acd/ehmmindex.acd -%%PLIST_HMMER%%share/EMBOSS/acd/ehmmbuild.acd -%%PLIST_HMMER%%share/EMBOSS/acd/ehmmalign.acd -%%PLIST_HMMER%%share/EMBOSS/acd/ehmmpfam.acd -%%PLIST_HMMER%%share/EMBOSS/acd/ehmmsearch.acd -%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/index.html -%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmalign.html -%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmbuild.html -%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmcalibrate.html -%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmconvert.html -%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmemit.html -%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmfetch.html -%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmindex.html -%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmpfam.html -%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmsearch.html -%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmalign.txt 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%%PLIST_SIGNATURE%%share/EMBOSS/acd/sigscanlig.acd +%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/libgen.txt +%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/matgen3d.txt +%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/rocon.txt +%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/rocplot.txt +%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/siggen.txt +%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/siggenlig.txt +%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/sigscan.txt +%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/sigscanlig.txt %%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/index.html %%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/libgen.html %%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/matgen3d.html @@ -326,22 +93,15 @@ %%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/siggenlig.html %%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/sigscan.html 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