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-rw-r--r--biology/bowtie/Makefile2
-rw-r--r--biology/cd-hit/Makefile1
-rw-r--r--biology/crux/Makefile2
-rw-r--r--biology/diamond/Makefile1
-rw-r--r--biology/fasttree/Makefile2
-rw-r--r--biology/jellyfish/Makefile1
-rw-r--r--biology/molden/Makefile2
-rw-r--r--biology/mopac/Makefile2
-rw-r--r--biology/ncbi-blast+/Makefile1
-rw-r--r--biology/plink/Makefile2
-rw-r--r--biology/psi88/Makefile2
-rw-r--r--biology/seqan-apps/Makefile2
-rw-r--r--biology/seqtools/Makefile1
-rw-r--r--biology/ssaha/Makefile2
-rw-r--r--biology/t_coffee/Makefile2
-rw-r--r--biology/tinker/Makefile2
16 files changed, 16 insertions, 11 deletions
diff --git a/biology/bowtie/Makefile b/biology/bowtie/Makefile
index 260600584fde..991393a072d1 100644
--- a/biology/bowtie/Makefile
+++ b/biology/bowtie/Makefile
@@ -3,7 +3,7 @@
PORTNAME= bowtie
PORTVERSION= 1.1.2
-PORTREVISION= 1
+PORTREVISION= 2
DISTVERSIONPREFIX= v
CATEGORIES= biology
diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile
index 7e3d5df96f56..5c348f176127 100644
--- a/biology/cd-hit/Makefile
+++ b/biology/cd-hit/Makefile
@@ -3,6 +3,7 @@
PORTNAME= cd-hit
PORTVERSION= 4.6.6
+PORTREVISION= 1
DISTVERSIONPREFIX= V
CATEGORIES= biology
diff --git a/biology/crux/Makefile b/biology/crux/Makefile
index 6131e4c47f47..50dc846b8459 100644
--- a/biology/crux/Makefile
+++ b/biology/crux/Makefile
@@ -3,7 +3,7 @@
PORTNAME= crux
PORTVERSION= 1.2.0
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology python
MASTER_SITES= http://www.canonware.com/download/Crux/
diff --git a/biology/diamond/Makefile b/biology/diamond/Makefile
index 1e0b76dc2150..2c0bbcd975de 100644
--- a/biology/diamond/Makefile
+++ b/biology/diamond/Makefile
@@ -2,6 +2,7 @@
PORTNAME= diamond
PORTVERSION= 0.8.36
+PORTREVISION= 1
DISTVERSIONPREFIX=v
CATEGORIES= biology
diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile
index d95457d0e6fb..1dcc0db615ba 100644
--- a/biology/fasttree/Makefile
+++ b/biology/fasttree/Makefile
@@ -3,7 +3,7 @@
PORTNAME= FastTree
PORTVERSION= 2.1.8
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= http://www.microbesonline.org/fasttree/
EXTRACT_SUFX= .c
diff --git a/biology/jellyfish/Makefile b/biology/jellyfish/Makefile
index 15a372200011..5225aae87fbd 100644
--- a/biology/jellyfish/Makefile
+++ b/biology/jellyfish/Makefile
@@ -3,6 +3,7 @@
PORTNAME= jellyfish
PORTVERSION= 2.2.6
+PORTREVISION= 1
DISTVERSIONPREFIX= v
CATEGORIES= biology
diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index e19e38db9ae6..23f472a3d7ea 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -3,7 +3,7 @@
PORTNAME= molden
PORTVERSION= 5.7
-PORTREVISION= 5
+PORTREVISION= 6
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/
diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile
index 67a6592572db..a160df902f3c 100644
--- a/biology/mopac/Makefile
+++ b/biology/mopac/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mopac
PORTVERSION= 7.${MOPAC_SUBVERSION}
-PORTREVISION= 1
+PORTREVISION= 2
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= http://bioinformatics.org/ghemical/download/%SUBDIR%/
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index f28217cf56a5..d12f3154dc45 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -3,6 +3,7 @@
PORTNAME= blast+
PORTVERSION= 2.5.0
+PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ \
http://acadix.biz/Ports/distfiles/
diff --git a/biology/plink/Makefile b/biology/plink/Makefile
index f0c613503a79..43c14f1ddf97 100644
--- a/biology/plink/Makefile
+++ b/biology/plink/Makefile
@@ -3,7 +3,7 @@
PORTNAME= plink
PORTVERSION= 1.07
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= biology science
MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/
DISTNAME= ${PORTNAME}-${PORTVERSION}-src
diff --git a/biology/psi88/Makefile b/biology/psi88/Makefile
index 7cd6f37adfa7..89cb93ec4c80 100644
--- a/biology/psi88/Makefile
+++ b/biology/psi88/Makefile
@@ -3,7 +3,7 @@
PORTNAME= psi88
PORTVERSION= 1.0
-PORTREVISION= 9
+PORTREVISION= 10
CATEGORIES= biology
MASTER_SITES= http://www.ccl.net/cca/software/SOURCES/FORTRAN/psi88/
DISTNAME= ${PORTNAME}
diff --git a/biology/seqan-apps/Makefile b/biology/seqan-apps/Makefile
index 48d64279d654..0191a80d8a5a 100644
--- a/biology/seqan-apps/Makefile
+++ b/biology/seqan-apps/Makefile
@@ -4,7 +4,7 @@
PORTNAME= seqan-apps
PORTVERSION= 2.2.0
DISTVERSIONPREFIX= seqan-v
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= biology
MAINTAINER= h2+fbsdports@fsfe.org
diff --git a/biology/seqtools/Makefile b/biology/seqtools/Makefile
index 558642255a6b..a242be63b953 100644
--- a/biology/seqtools/Makefile
+++ b/biology/seqtools/Makefile
@@ -2,6 +2,7 @@
PORTNAME= seqtools
PORTVERSION= 4.44.1
+PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/
diff --git a/biology/ssaha/Makefile b/biology/ssaha/Makefile
index 819d51492b5e..c7f6966f8a47 100644
--- a/biology/ssaha/Makefile
+++ b/biology/ssaha/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ssaha
PORTVERSION= 3.1c
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= biology
MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha/
DISTNAME= ${PORTNAME}_v${PORTVERSION:S/.//}
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile
index 8c02abaad776..d7a37f4b9c6e 100644
--- a/biology/t_coffee/Makefile
+++ b/biology/t_coffee/Makefile
@@ -4,7 +4,7 @@
PORTNAME= t_coffee
PORTVERSION= 9.03
DISTVERSIONSUFFIX= .r1318
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= biology
MASTER_SITES= http://www.tcoffee.org/Packages/Stable/Version_${PORTVERSION}${DISTVERSIONSUFFIX}/
DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION}${DISTVERSIONSUFFIX}
diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile
index bceb67391585..a9f98b84e13b 100644
--- a/biology/tinker/Makefile
+++ b/biology/tinker/Makefile
@@ -3,7 +3,7 @@
PORTNAME= tinker
PORTVERSION= 7.1.3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-16 23:54:56 +0000