diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/crux/Makefile | 2 | ||||
| -rw-r--r-- | biology/embassy/Makefile | 2 | ||||
| -rw-r--r-- | biology/emboss/Makefile | 8 | ||||
| -rw-r--r-- | biology/iolib/Makefile | 2 | ||||
| -rw-r--r-- | biology/libsbml/Makefile | 2 | ||||
| -rw-r--r-- | biology/mopac/Makefile | 2 | ||||
| -rw-r--r-- | biology/ortep3/Makefile | 2 | ||||
| -rw-r--r-- | biology/plink/Makefile | 2 | ||||
| -rw-r--r-- | biology/plinkseq/Makefile | 2 | ||||
| -rw-r--r-- | biology/protomol/Makefile | 6 | ||||
| -rw-r--r-- | biology/pymol/Makefile | 4 | ||||
| -rw-r--r-- | biology/seaview/Makefile | 4 |
12 files changed, 19 insertions, 19 deletions
diff --git a/biology/crux/Makefile b/biology/crux/Makefile index 765550050338..6362c0432199 100644 --- a/biology/crux/Makefile +++ b/biology/crux/Makefile @@ -31,7 +31,7 @@ USE_FORTRAN= yes .if ${PORT_OPTIONS:MSYS_LINALG} CONFIGURE_ARGS+= --enable-sys-linalg -LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas +LIB_DEPENDS+= libatlas.so:${PORTSDIR}/math/atlas .else CONFIGURE_ARGS+= --disable-sys-linalg .endif diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile index 6a3b695cffe5..122f9878e49c 100644 --- a/biology/embassy/Makefile +++ b/biology/embassy/Makefile @@ -11,7 +11,7 @@ DIST_SUBDIR= emboss MAINTAINER= wen@FreeBSD.org COMMENT= Collection of contributed EMBOSS applications -LIB_DEPENDS= nucleus.6:${PORTSDIR}/biology/emboss +LIB_DEPENDS= libnucleus.so:${PORTSDIR}/biology/emboss PREFIX?= ${LOCALBASE}/emboss NO_MTREE= yes diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile index a44e339ab1a5..3240f7029406 100644 --- a/biology/emboss/Makefile +++ b/biology/emboss/Makefile @@ -15,8 +15,8 @@ COMMENT= A collection of open source tools for genetic sequence analysis BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw \ primer3:${PORTSDIR}/biology/primer3 -LIB_DEPENDS= gd:${PORTSDIR}/graphics/gd \ - png15:${PORTSDIR}/graphics/png +LIB_DEPENDS= libgd.so:${PORTSDIR}/graphics/gd \ + libpng15.so:${PORTSDIR}/graphics/png CONFLICTS= qmail-ldap-[0-9]* digest-[0-9]* @@ -38,8 +38,8 @@ CONFIGURE_ARGS+= --with-docroot=${DOCSDIR} .if !defined(WITHOUT_X11) USE_XORG= x11 USES+= motif -LIB_DEPENDS+= gd:${PORTSDIR}/graphics/gd \ - png15:${PORTSDIR}/graphics/png +LIB_DEPENDS+= libgd.so:${PORTSDIR}/graphics/gd \ + libpng15.so:${PORTSDIR}/graphics/png .else CONFIGURE_ARGS+= --without-x .endif diff --git a/biology/iolib/Makefile b/biology/iolib/Makefile index c47066958bca..5a16d60db4c3 100644 --- a/biology/iolib/Makefile +++ b/biology/iolib/Makefile @@ -13,7 +13,7 @@ COMMENT= General purpose trace file (and Experiment File) reading interface LICENSE= BSD -LIB_DEPENDS= curl:${PORTSDIR}/ftp/curl +LIB_DEPENDS= libcurl.so:${PORTSDIR}/ftp/curl USE_AUTOTOOLS= libtool:env GNU_CONFIGURE= yes diff --git a/biology/libsbml/Makefile b/biology/libsbml/Makefile index 1dc573850884..11a3544135de 100644 --- a/biology/libsbml/Makefile +++ b/biology/libsbml/Makefile @@ -11,7 +11,7 @@ DISTNAME= ${PORTNAME}-${PORTVERSION}-src MAINTAINER= wen@FreeBSD.org COMMENT= API Library for Working with SBML File -LIB_DEPENDS= xml2.5:${PORTSDIR}/textproc/libxml2 +LIB_DEPENDS= libxml2.so:${PORTSDIR}/textproc/libxml2 OPTIONS_DEFINE= PYTHON RUBY diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile index 9d5c5c76a083..ad1ab10dfcff 100644 --- a/biology/mopac/Makefile +++ b/biology/mopac/Makefile @@ -12,7 +12,7 @@ DISTNAME= ${PORTNAME}7-${MOPAC_SUBVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= Semi-empirical (MNDO, etc.) molecular orbital calculation -LIB_DEPENDS= f2c:${PORTSDIR}/lang/f2c +LIB_DEPENDS= libf2c.so:${PORTSDIR}/lang/f2c USE_GMAKE= yes USE_AUTOTOOLS= aclocal automake autoconf libtool diff --git a/biology/ortep3/Makefile b/biology/ortep3/Makefile index b9b842319ef1..419220c74e4d 100644 --- a/biology/ortep3/Makefile +++ b/biology/ortep3/Makefile @@ -13,7 +13,7 @@ EXTRACT_ONLY= ortep.tar.Z MAINTAINER= ports@FreeBSD.org COMMENT= Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure -PGPLOT_LIB_DEPENDS= pgplot:${PORTSDIR}/graphics/pgplot +PGPLOT_LIB_DEPENDS= libpgplot.so:${PORTSDIR}/graphics/pgplot USE_FORTRAN= yes WRKSRC= ${WRKDIR}/ortep/src diff --git a/biology/plink/Makefile b/biology/plink/Makefile index 7ee5ad3c7241..3a03a5eee00c 100644 --- a/biology/plink/Makefile +++ b/biology/plink/Makefile @@ -13,7 +13,7 @@ COMMENT= Whole genome association analysis toolset LICENSE= GPLv2 -LIB_DEPENDS= lapack:${PORTSDIR}/math/lapack +LIB_DEPENDS= liblapack.so:${PORTSDIR}/math/lapack USE_ZIP= yes USE_GMAKE= yes diff --git a/biology/plinkseq/Makefile b/biology/plinkseq/Makefile index 8d3b9caab28f..2ec0ed1a03cf 100644 --- a/biology/plinkseq/Makefile +++ b/biology/plinkseq/Makefile @@ -12,7 +12,7 @@ COMMENT= Toolset for working with human genetic variation data LICENSE= GPLv2 -LIB_DEPENDS= protobuf:${PORTSDIR}/devel/protobuf +LIB_DEPENDS= libprotobuf.so:${PORTSDIR}/devel/protobuf USE_DOS2UNIX= yes USE_LDCONFIG= yes diff --git a/biology/protomol/Makefile b/biology/protomol/Makefile index 52e8e658299b..96b1b18d2b64 100644 --- a/biology/protomol/Makefile +++ b/biology/protomol/Makefile @@ -12,9 +12,9 @@ EXTRACT_SUFX= # empty MAINTAINER= sangwoos@gmail.com COMMENT= OO, component based, framework for molecular dynamics (MD) simulations -LIB_DEPENDS= png15:${PORTSDIR}/graphics/png \ - jpeg.11:${PORTSDIR}/graphics/jpeg \ - tiff.4:${PORTSDIR}/graphics/tiff +LIB_DEPENDS= libpng15.so:${PORTSDIR}/graphics/png \ + libjpeg.so:${PORTSDIR}/graphics/jpeg \ + libtiff.so:${PORTSDIR}/graphics/tiff GNU_CONFIGURE= yes USE_XORG= xmu xt sm ice xext x11 xi diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile index b57e88b617a9..905999115534 100644 --- a/biology/pymol/Makefile +++ b/biology/pymol/Makefile @@ -13,8 +13,8 @@ COMMENT= Free and Open-Source molecular modeling system BUILD_DEPENDS= ${PYNUMERIC} RUN_DEPENDS= ${PYNUMERIC} \ ${PYTHON_SITELIBDIR}/Pmw:${PORTSDIR}/x11-toolkits/py-Pmw -LIB_DEPENDS= png15:${PORTSDIR}/graphics/png \ - freetype.9:${PORTSDIR}/print/freetype2 +LIB_DEPENDS= libpng15.so:${PORTSDIR}/graphics/png \ + libfreetype.so:${PORTSDIR}/print/freetype2 VERSION= 1.5.0.1 SVNREVISION= 3978 diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile index ccb78d7e2b16..ef44fd56c58d 100644 --- a/biology/seaview/Makefile +++ b/biology/seaview/Makefile @@ -11,7 +11,7 @@ DISTNAME= ${PORTNAME}_${PORTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= Multiple DNA/protein sequence alignment editor -LIB_DEPENDS= fltk:${PORTSDIR}/x11-toolkits/fltk +LIB_DEPENDS= libfltk.so:${PORTSDIR}/x11-toolkits/fltk OPTIONS_DEFINE= PDFLIB OPTIONS_DEFAULT=PDFLIB @@ -39,7 +39,7 @@ NO_STAGE= yes .include <bsd.port.options.mk> .if ${PORT_OPTIONS:MPDFLIB} -LIB_DEPENDS+= pdf:${PORTSDIR}/print/pdflib +LIB_DEPENDS+= libpdf.so:${PORTSDIR}/print/pdflib MAKE_ENV+= LPDF='-L${LOCALBASE}/lib -lpdf' .else MAKE_ENV+= PDF_PS_FLAGS='-DNO_PDF' |