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-rw-r--r--biology/bowtie/Makefile2
-rw-r--r--biology/canu/Makefile2
-rw-r--r--biology/cd-hit/Makefile2
-rw-r--r--biology/crux/Makefile2
-rw-r--r--biology/fasttree/Makefile1
-rw-r--r--biology/iqtree/Makefile1
-rw-r--r--biology/molden/Makefile2
-rw-r--r--biology/mopac/Makefile2
-rw-r--r--biology/ncbi-blast+/Makefile2
-rw-r--r--biology/p5-transdecoder/Makefile1
-rw-r--r--biology/plink/Makefile2
-rw-r--r--biology/psi88/Makefile2
-rw-r--r--biology/py-biom-format/Makefile2
-rw-r--r--biology/py-biopython/Makefile2
-rw-r--r--biology/py-bx-python/Makefile1
-rw-r--r--biology/py-macs2/Makefile1
-rw-r--r--biology/pycogent/Makefile1
-rw-r--r--biology/pyfasta/Makefile2
-rw-r--r--biology/ssaha/Makefile2
-rw-r--r--biology/t_coffee/Makefile2
-rw-r--r--biology/tinker/Makefile2
21 files changed, 21 insertions, 15 deletions
diff --git a/biology/bowtie/Makefile b/biology/bowtie/Makefile
index 075a0579f921..9ef8c4ad1bd1 100644
--- a/biology/bowtie/Makefile
+++ b/biology/bowtie/Makefile
@@ -2,7 +2,7 @@
PORTNAME= bowtie
PORTVERSION= 1.1.2
-PORTREVISION= 4
+PORTREVISION= 5
DISTVERSIONPREFIX= v
CATEGORIES= biology
diff --git a/biology/canu/Makefile b/biology/canu/Makefile
index 1ea9dc48e6af..0994f1a21bbe 100644
--- a/biology/canu/Makefile
+++ b/biology/canu/Makefile
@@ -3,7 +3,7 @@
PORTNAME= canu
DISTVERSIONPREFIX= v
DISTVERSION= 1.6
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology java perl5
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile
index fad3659ca801..4511e7e0990d 100644
--- a/biology/cd-hit/Makefile
+++ b/biology/cd-hit/Makefile
@@ -2,7 +2,7 @@
PORTNAME= cd-hit
PORTVERSION= 4.6.6
-PORTREVISION= 2
+PORTREVISION= 3
DISTVERSIONPREFIX= V
CATEGORIES= biology
diff --git a/biology/crux/Makefile b/biology/crux/Makefile
index 583307dd4af9..0689e1ab25f6 100644
--- a/biology/crux/Makefile
+++ b/biology/crux/Makefile
@@ -3,7 +3,7 @@
PORTNAME= crux
PORTVERSION= 1.2.0
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= biology python
MASTER_SITES= http://www.canonware.com/download/Crux/
diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile
index ed3311adefda..a6eaebdf7c26 100644
--- a/biology/fasttree/Makefile
+++ b/biology/fasttree/Makefile
@@ -2,6 +2,7 @@
PORTNAME= FastTree
DISTVERSION= 2.1.10
+PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= http://www.microbesonline.org/fasttree/
EXTRACT_SUFX= .c
diff --git a/biology/iqtree/Makefile b/biology/iqtree/Makefile
index 14fe324b8c5e..e4befbe71cdc 100644
--- a/biology/iqtree/Makefile
+++ b/biology/iqtree/Makefile
@@ -3,6 +3,7 @@
PORTNAME= iqtree
DISTVERSIONPREFIX= v
DISTVERSION= 1.6.2
+PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index 3cfeaae5c423..88127c50ab9e 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -3,7 +3,7 @@
PORTNAME= molden
PORTVERSION= 5.7
-PORTREVISION= 13
+PORTREVISION= 14
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/
diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile
index 65b3d4a60d5b..2ae7554f66c6 100644
--- a/biology/mopac/Makefile
+++ b/biology/mopac/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mopac
PORTVERSION= 7.${MOPAC_SUBVERSION}
-PORTREVISION= 3
+PORTREVISION= 4
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= http://bioinformatics.org/ghemical/download/%SUBDIR%/
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index c6f8790c4811..c2872fc29bc2 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -2,7 +2,7 @@
PORTNAME= blast+
PORTVERSION= 2.5.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= biology
MASTER_SITES= http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ \
http://acadix.biz/Ports/distfiles/
diff --git a/biology/p5-transdecoder/Makefile b/biology/p5-transdecoder/Makefile
index 6bc4ab275626..244f4b7b8bae 100644
--- a/biology/p5-transdecoder/Makefile
+++ b/biology/p5-transdecoder/Makefile
@@ -2,6 +2,7 @@
PORTNAME= transdecoder
PORTVERSION= 2.1.0
+PORTREVISION= 1
DISTVERSIONPREFIX=v
CATEGORIES= biology perl5
PKGNAMEPREFIX= p5-
diff --git a/biology/plink/Makefile b/biology/plink/Makefile
index 9af948b002ab..e8cd0642e865 100644
--- a/biology/plink/Makefile
+++ b/biology/plink/Makefile
@@ -2,7 +2,7 @@
PORTNAME= plink
PORTVERSION= 1.07
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= biology science
MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/
DISTNAME= ${PORTNAME}-${PORTVERSION}-src
diff --git a/biology/psi88/Makefile b/biology/psi88/Makefile
index 6ce0d9fe629d..009778f7dda3 100644
--- a/biology/psi88/Makefile
+++ b/biology/psi88/Makefile
@@ -3,7 +3,7 @@
PORTNAME= psi88
PORTVERSION= 1.0
-PORTREVISION= 11
+PORTREVISION= 12
CATEGORIES= biology
MASTER_SITES= http://www.ccl.net/cca/software/SOURCES/FORTRAN/psi88/
DISTNAME= ${PORTNAME}
diff --git a/biology/py-biom-format/Makefile b/biology/py-biom-format/Makefile
index 9b94f91c9b4d..f81beef6df74 100644
--- a/biology/py-biom-format/Makefile
+++ b/biology/py-biom-format/Makefile
@@ -2,7 +2,7 @@
PORTNAME= biom-format
PORTVERSION= 2.1.6
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile
index f03cf742dfc8..8954cb71d7aa 100644
--- a/biology/py-biopython/Makefile
+++ b/biology/py-biopython/Makefile
@@ -3,7 +3,7 @@
PORTNAME= biopython
PORTVERSION= 1.70
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology python
MASTER_SITES= http://www.biopython.org/DIST/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/py-bx-python/Makefile b/biology/py-bx-python/Makefile
index 12e64056240b..12593741c665 100644
--- a/biology/py-bx-python/Makefile
+++ b/biology/py-bx-python/Makefile
@@ -3,6 +3,7 @@
PORTNAME= bx-python
DISTVERSION= 0.8.1
+PORTREVISION= 1
CATEGORIES= biology python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/py-macs2/Makefile b/biology/py-macs2/Makefile
index 82180b830d11..6794a65633af 100644
--- a/biology/py-macs2/Makefile
+++ b/biology/py-macs2/Makefile
@@ -2,6 +2,7 @@
PORTNAME= macs2
PORTVERSION= 2.1.0.p20170505
+PORTREVISION= 1
CATEGORIES= biology python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/pycogent/Makefile b/biology/pycogent/Makefile
index 73dde351e471..9050584c0ca5 100644
--- a/biology/pycogent/Makefile
+++ b/biology/pycogent/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pycogent
PORTVERSION= 1.9
+PORTREVISION= 1
CATEGORIES= biology python
MAINTAINER= python@FreeBSD.org
diff --git a/biology/pyfasta/Makefile b/biology/pyfasta/Makefile
index c06752787757..9f49320ad1b1 100644
--- a/biology/pyfasta/Makefile
+++ b/biology/pyfasta/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pyfasta
PORTVERSION= 0.5.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/ssaha/Makefile b/biology/ssaha/Makefile
index e973d40b3dbf..e87155434ee8 100644
--- a/biology/ssaha/Makefile
+++ b/biology/ssaha/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ssaha
PORTVERSION= 3.1c
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= biology
MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha/
DISTNAME= ${PORTNAME}_v${PORTVERSION:S/.//}
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile
index ad4b555386d6..3be25526d9f9 100644
--- a/biology/t_coffee/Makefile
+++ b/biology/t_coffee/Makefile
@@ -4,7 +4,7 @@
PORTNAME= t_coffee
PORTVERSION= 9.03
DISTVERSIONSUFFIX= .r1318
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology
MASTER_SITES= http://www.tcoffee.org/Packages/Stable/Version_${PORTVERSION}${DISTVERSIONSUFFIX}/
DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION}${DISTVERSIONSUFFIX}
diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile
index 66c499bc4931..5bf524283206 100644
--- a/biology/tinker/Makefile
+++ b/biology/tinker/Makefile
@@ -3,7 +3,7 @@
PORTNAME= tinker
PORTVERSION= 7.1.3
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= biology
MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-08 17:29:03 +0000