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-rw-r--r--math/petsc/Makefile109
-rw-r--r--math/petsc/distinfo6
-rw-r--r--math/petsc/pkg-plist69
3 files changed, 94 insertions, 90 deletions
diff --git a/math/petsc/Makefile b/math/petsc/Makefile
index f3cd78eb3030..0a12aae1af15 100644
--- a/math/petsc/Makefile
+++ b/math/petsc/Makefile
@@ -6,28 +6,28 @@
#
PORTNAME= petsc
-PORTVERSION= 2.3.0
-PORTREVISION= 3
+PORTVERSION= 2.3.1
CATEGORIES= math parallel
MASTER_SITES= ftp://ftp.mcs.anl.gov/pub/petsc/release-snapshots/
-DISTNAME= v${PORTVERSION}-${PATCHLEVEL}.${PORTNAME}
+DISTNAME= ${PORTNAME}-${PORTVERSION}-p${PATCHLEVEL}
MAINTAINER= ports@FreeBSD.org
COMMENT= Portable, Extensible Toolkit for Scientific computation
-PATCHLEVEL= 36
+RUN_DEPENDS= ksh93:${PORTSDIR}/shells/ksh93
+
+PATCHLEVEL= 7
HAS_CONFIGURE= yes
USE_PYTHON= yes
-USE_REINPLACE= yes
CONFIGURE_SCRIPT= config/configure.py
CONFIGURE_LOG= configure.log
CONFIGURE_ENV= PETSC_ARCH=${TARGET} \
PETSC_DIR=${WRKSRC}
-CONFIGURE_ARGS= --prefix=${PREFIX} --CFLAGS="${CFLAGS}" \
- --CXX_CXXFLAGS="${CXXFLAGS}" --FFLAGS="${FFLAGS}" \
- --with-python=1 ---with-shared=1
-ALL_TARGET= all python
+CONFIGURE_ARGS= --prefix=${PREFIX}/${PFX} --COPTFLAGS="${CFLAGS}" \
+ --CXXOPTFLAGS="${CXXFLAGS}" --FOPTFLAGS="${FFLAGS}" \
+ --with-shared=1
+ALL_TARGET= all
MAKEFILE= makefile
MAKE_ENV= PETSC_DIR=${WRKSRC}
@@ -37,13 +37,12 @@ PKGMESSAGE= ${WRKDIR}/pkg-message
.if !defined(WITHOUT_X11)
USE_XLIB= yes
-CONFIGURE_ARGS+= --with-x-include=${X11BASE}/include \
+CONFIGURE_ARGS+= --with-x-include=${X11BASE}/include \
--with-x-library=${X11BASE}/lib/libX11.so
.endif
FFLAGS?= -O2
-PFX= ${PORTNAME}-${PORTVERSION}
-WRKSRC= ${WRKDIR}/${PFX}
+PFX= ${PORTNAME}
TARGET= ${OPSYS:L}
PLIST_SUB= PFX=${PFX} TARGET=${TARGET}
@@ -53,12 +52,6 @@ LIBBLASLAPACK= "-L${LOCALBASE}/lib -lalapack -lf77blas -lcblas -latlas -lg2c -lm
CONFIGURE_ARGS+= --with-blas-lapack-lib=${LIBBLASLAPACK}
.endif
-.if !defined(WITHOUT_SUPERLU)
-BUILD_DEPENDS+= ${LOCALBASE}/lib/libsuperlu.a:${PORTSDIR}/math/superlu
-CONFIGURE_ARGS+= --with-superlu-include=${LOCALBASE}/include/superlu \
- --with-superlu-lib=${LOCALBASE}/lib/libsuperlu.a
-.endif
-
.if !defined(WITHOUT_UMFPACK)
BUILD_DEPENDS+= ${LOCALBASE}/lib/libumfpack.a:${PORTSDIR}/math/umfpack
CONFIGURE_ARGS+= --with-umfpack-include="${LOCALBASE}/include/UMFPACK" \
@@ -78,23 +71,33 @@ MPIDIR= ${LOCALBASE}/mpich
.include <bsd.port.pre.mk>
-.if exists(${MPIDIR}/bin/mpiCC)
+.if exists(${MPIDIR}/bin/mpiCC) && !defined(WITHOUT_MPI)
WITH_MPI= yes
.endif
.if defined(WITH_MPI)
+. if exists(${LOCALBASE}/include/mpi.h)
+BROKEN= Cannot build with mpich when lam7 is installed - set WITHOUT_MPI or deinstall lam7
+. endif
PKGNAMESUFFIX+= -mpich
BUILD_DEPENDS+= ${MPIDIR}/bin/mpiCC:${PORTSDIR}/net/mpich
RUN_DEPENDS+= ${MPIDIR}/bin/mpirun:${PORTSDIR}/net/mpich
CONFIGURE_ARGS+= --with-mpi-dir=${LOCALBASE}/mpich
CONFLICTS= petsc-2*
-PLIST_SUB+= MPI=""
+PLIST_SUB+= MPIUNI="@comment "
.else
CONFIGURE_ARGS+= --with-mpi=0
CONFLICTS= petsc-mpich-2*
WITHOUT_BS95= yes
WITHOUT_PARMETIS= yes
WITHOUT_SPOOLES= yes
-PLIST_SUB+= MPI="@comment "
+WITHOUT_SUPERLU= yes
+PLIST_SUB+= MPIUNI=""
+.endif
+
+.if !defined(WITHOUT_SUPERLU) && !defined(WITHOUT_BLASLAPACK)
+BUILD_DEPENDS+= ${LOCALBASE}/lib/libsuperlu.a:${PORTSDIR}/math/superlu
+CONFIGURE_ARGS+= --with-superlu-include=${LOCALBASE}/include/superlu \
+ --with-superlu-lib=${LOCALBASE}/lib/libsuperlu.a
.endif
.if defined(WITHOUT_BS95)
@@ -109,27 +112,27 @@ CONFIGURE_ARGS+= --with-blocksolve95-include=${LOCALBASE}/include \
CONFIGURE_ARGS+= --with-parmetis=0
.else
BUILD_DEPENDS+= ${LOCALBASE}/lib/parmetis/libparmetis.a:${PORTSDIR}/math/parmetis
-LIBPARMETIS= "${LOCALBASE}/lib/parmetis/libparmetis.a ${LOCALBASE}/lib/parmetis/libmetis.a"
CONFIGURE_ARGS+= --with-parmetis=1 \
--with-parmetis-include=${LOCALBASE}/include/parmetis \
- --with-parmetis-lib=[${LOCALBASE}/lib/parmetis/libparmetis.a,${LOCALBASE}/lib/parmetis/libmetis.a,${LIBDIR}/libm.a]
+ --with-parmetis-lib=[${LOCALBASE}/lib/parmetis/libparmetis.a,${LOCALBASE}/lib/parmetis/libmetis.a]
.endif
-#.if exists(${LIBBLACS})
-#WITH_BLACS= yes
-#.endif
-#.if defined(WITH_BLACS)
-#BUILD_DEPENDS+= ${LIBBLACS}:${PORTSDIR}/math/blacs
-#CONFIGURE_ARGS+= --with_mumps=1 \
-# --with-blacs-lib=1
-#. if exists(${LIBSCALAPACK})
-#WITH_SCALAPACK= yes
-#. endif
-#. if defined(WITH_SCALAPACK)
-#BUILD_DEPENDS+= ${LIBSCALAPACK}:${PORTSDIR}/math/scalapack
-#CONFIGURE_ARGS+= --with-scalapack-lib=1
-#. endif
-#.endif
+.if exists(${LIBBLACS})
+WITH_BLACS= yes
+.endif
+.if defined(WITH_BLACS) && !defined(WITH_MPI)
+BUILD_DEPENDS+= ${LIBBLACS}:${PORTSDIR}/math/blacs
+CONFIGURE_ARGS+= --with_mumps=0 \
+ --with-blacs-include=${LOCALBASE}/include \
+ --with-blacs-lib=[${LOCALBASE}/lib/libblacs.a,${LOCALBASE}/lib/libblacsc.a,${LOCALBASE}/lib/libblacsf77.a]
+. if exists(${LIBSCALAPACK})
+WITH_SCALAPACK= yes
+. endif
+. if defined(WITH_SCALAPACK)
+BUILD_DEPENDS+= ${LIBSCALAPACK}:${PORTSDIR}/math/scalapack
+CONFIGURE_ARGS+= --with-scalapack-dir=${LOCALBASE}
+. endif
+.endif
#.if exists(${LOCALBASE}/bin/lgrind)
#WITH_LGRIND= yes
@@ -139,14 +142,14 @@ CONFIGURE_ARGS+= --with-parmetis=1 \
#RUN_DEPENDS+= lgrind:${PORTSDIR}/print/lgrind
#.endif
-#.if exists(${LOCALBASE}/lib/libnetcdf.so)
-#WITH_NETCDF= yes
-#.endif
-#.if defined(WITH_NETCDF)
-#LIB_DEPENDS+= netcdf.1:${PORTSDIR}/science/netcdf
-#CONFIGURE_ENV+= NETCDF_INCLUDE=${LOCALBASE}/include \
-# NETCDF_LIB=${LOCALBASE}/lib
-#.endif
+.if exists(${LOCALBASE}/lib/libnetcdf.so)
+WITH_NETCDF= yes
+.endif
+.if defined(WITH_NETCDF)
+LIB_DEPENDS+= netcdf.1:${PORTSDIR}/science/netcdf
+CONFIGURE_ENV+= PNETCDF_INCLUDE=${LOCALBASE}/include \
+ PNETCDF_LIB=${LOCALBASE}/lib
+.endif
.if exists(${LOCALBASE}/bin/svn)
WITH_SVN= yes
@@ -167,7 +170,7 @@ RUN_DEPENDS+= svn:${PORTSDIR}/devel/subversion
.if !defined(WITHOUT_SPOOLES)
. if exists(${LOCALBASE}/lib/libspooles.a) \
&& !exists(${LOCALBASE}/include/spooles/MPI/spoolesMPI.h)
-BROKEN= "Please deinstall spooles and reinstall spooles-mpich"
+BROKEN= Please deinstall spooles and reinstall spooles-mpich
. else
BUILD_DEPENDS+= ${LOCALBASE}/lib/libspooles.a:${PORTSDIR}/math/spooles-mpich
. endif
@@ -179,6 +182,9 @@ pre-everything::
@${ECHO_MSG}
.if !defined (WITH_MPI)
@${ECHO_MSG} "Define WITH_MPI to use mpich."
+ @${ECHO_MSG} "Note: this is not compatible with Python bindings!"
+.elif !defined (WITHOUT_MPI)
+ @${ECHO_MSG} "Define WITHOUT_MPI to not use mpich."
.endif
.if !defined (WITH_SVN)
@${ECHO_MSG} "Define WITH_SVN to use subversion."
@@ -198,9 +204,9 @@ pre-everything::
.if !defined (WITHOUT_SPOOLES)
@${ECHO_MSG} "Define WITHOUT_SPOOLES to remove SPOOLES support."
.endif
-.if !defined (WITHOUT_SUPERLU)
- @${ECHO_MSG} "Define WITHOUT_SUPERLU to remove SuperLU support."
-.endif
+#.if !defined (WITHOUT_SUPERLU)
+# @${ECHO_MSG} "Define WITHOUT_SUPERLU to remove SuperLU support."
+#.endif
.if !defined (WITHOUT_UMFPACK)
@${ECHO_MSG} "Define WITHOUT_UMFPACK to remove UMFPACK support."
.endif
@@ -211,6 +217,9 @@ pre-configure:
@${REINPLACE_CMD} -e "s|AMD/Include|include/AMD|" \
-e "s|AMD/Lib|${LOCALBASE}/lib|" \
${WRKSRC}/python/PETSc/packages/UMFPACK.py
+ @${REINPLACE_CMD} -e "s|/bin/ksh|${LOCALBASE}/bin/ksh93|" \
+ ${WRKSRC}/bin/popup
+ @${RM} ${WRKSRC}/bin/popup.bak
post-install:
${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/${PFX}/bin
diff --git a/math/petsc/distinfo b/math/petsc/distinfo
index aaae37949150..ce72e73af231 100644
--- a/math/petsc/distinfo
+++ b/math/petsc/distinfo
@@ -1,3 +1,3 @@
-MD5 (v2.3.0-36.petsc.tar.gz) = 848dd31deaf52447998e2d4c9d1e3f39
-SHA256 (v2.3.0-36.petsc.tar.gz) = 31c7d61d846120e4e89dc708cdadd10e41106c81c2256b5fd05c17edf52d79d6
-SIZE (v2.3.0-36.petsc.tar.gz) = 9404277
+MD5 (petsc-2.3.1-p7.tar.gz) = 2d2a15d0ad066a48e14ac11d6f082b3f
+SHA256 (petsc-2.3.1-p7.tar.gz) = 80e429fbcd5564b5086aecb559a0618f7551ea2891fce5f413bb1368194dca3d
+SIZE (petsc-2.3.1-p7.tar.gz) = 10278608
diff --git a/math/petsc/pkg-plist b/math/petsc/pkg-plist
index 68b080bb67a9..0a683581c299 100644
--- a/math/petsc/pkg-plist
+++ b/math/petsc/pkg-plist
@@ -1,3 +1,9 @@
+%%PFX%%/bin/TOPSGenerator.py
+%%PFX%%/bin/TOPSGenerator.pyc
+%%PFX%%/bin/TOPSGenerator.pyo
+%%PFX%%/bin/TOPSInstaller.py
+%%PFX%%/bin/TOPSInstaller.pyc
+%%PFX%%/bin/TOPSInstaller.pyo
%%PFX%%/bin/adiforfix.py
%%PFX%%/bin/adiforfix.pyc
%%PFX%%/bin/adiforfix.pyo
@@ -16,6 +22,10 @@
%%PFX%%/bin/matlab/PetscBagRead.m
%%PFX%%/bin/matlab/PetscBinaryRead.m
%%PFX%%/bin/matlab/PetscBinaryWrite.m
+%%PFX%%/bin/matlab/closeport.m
+%%PFX%%/bin/matlab/launch.m
+%%PFX%%/bin/matlab/openport.m
+%%PFX%%/bin/matlab/receive.m
%%PFX%%/bin/mpiexec.valgrind
%%PFX%%/bin/mpirun.chiba
%%PFX%%/bin/mpirun.gmalloc
@@ -43,6 +53,7 @@
%%PFX%%/bin/win32fe/win32feutils.dll
%%PFX%%/bmake/adic.init
%%PFX%%/bmake/adicmf.init
+%%PFX%%/bmake/adicmfb.init
%%PFX%%/bmake/common/base
%%PFX%%/bmake/common/rules
%%PFX%%/bmake/common/rules.fortran.cpp
@@ -59,6 +70,7 @@
%%PFX%%/bmake/%%TARGET%%/jobs
%%PFX%%/bmake/%%TARGET%%/petscconf
%%PFX%%/bmake/%%TARGET%%/petscconf.h
+%%PFX%%/bmake/%%TARGET%%/petscconfiginfo.h
%%PFX%%/bmake/%%TARGET%%/petscfix.h
%%PFX%%/bmake/%%TARGET%%/petscmachineinfo.h
%%PFX%%/bmake/%%TARGET%%/petscrules
@@ -88,34 +100,6 @@
%%PFX%%/include/adic/run-alloc.h.html
%%PFX%%/include/adic/run-map.h
%%PFX%%/include/adic/run-map.h.html
-%%PFX%%/include/f90impl/f90_IRIX.h
-%%PFX%%/include/f90impl/f90_IRIX.h.html
-%%PFX%%/include/f90impl/f90_absoft.h
-%%PFX%%/include/f90impl/f90_absoft.h.html
-%%PFX%%/include/f90impl/f90_alpha.h
-%%PFX%%/include/f90impl/f90_alpha.h.html
-%%PFX%%/include/f90impl/f90_cray_x1.h
-%%PFX%%/include/f90impl/f90_g95.h
-%%PFX%%/include/f90impl/f90_hpux.h
-%%PFX%%/include/f90impl/f90_hpux.h.html
-%%PFX%%/include/f90impl/f90_intel.h
-%%PFX%%/include/f90impl/f90_intel8.h
-%%PFX%%/include/f90impl/f90_nag.h
-%%PFX%%/include/f90impl/f90_nag.h.html
-%%PFX%%/include/f90impl/f90_pgi.h
-%%PFX%%/include/f90impl/f90_rs6000.h
-%%PFX%%/include/f90impl/f90_rs6000.h.html
-%%PFX%%/include/f90impl/f90_solaris.h
-%%PFX%%/include/f90impl/f90_solaris.h.html
-%%PFX%%/include/f90impl/f90_solaris_old.h
-%%PFX%%/include/f90impl/f90_solaris_old.h.html
-%%PFX%%/include/f90impl/f90_t3e.h
-%%PFX%%/include/f90impl/f90_t3e.h.html
-%%PFX%%/include/f90impl/f90_win32.h
-%%PFX%%/include/f90impl/f90_win32.h.html
-%%PFX%%/include/f90impl/index.html
-%%PFX%%/include/f90impl/makefile
-%%PFX%%/include/f90impl/makefile.html
%%PFX%%/include/finclude/index.html
%%PFX%%/include/finclude/makefile
%%PFX%%/include/finclude/makefile.html
@@ -193,10 +177,6 @@
%%PFX%%/include/petscdraw.h.html
%%PFX%%/include/petscerror.h
%%PFX%%/include/petscerror.h.html
-%%PFX%%/include/petscf90.h
-%%PFX%%/include/petscf90.h.html
-%%PFX%%/include/petschead.h
-%%PFX%%/include/petschead.h.html
%%PFX%%/include/petscis.h
%%PFX%%/include/petscis.h.html
%%PFX%%/include/petscksp.h
@@ -209,6 +189,7 @@
%%PFX%%/include/petscmath.h.html
%%PFX%%/include/petscmatlab.h
%%PFX%%/include/petscmatlab.h.html
+%%PFX%%/include/petscmesh.h
%%PFX%%/include/petscmg.h
%%PFX%%/include/petscmg.h.html
%%PFX%%/include/petscoptions.h
@@ -221,6 +202,8 @@
%%PFX%%/include/petscsnes.h.html
%%PFX%%/include/petscsys.h
%%PFX%%/include/petscsys.h.html
+%%PFX%%/include/petsctime.h
+%%PFX%%/include/petsctime.h.html
%%PFX%%/include/petscts.h
%%PFX%%/include/petscts.h.html
%%PFX%%/include/petscvec.h
@@ -229,23 +212,35 @@
%%PFX%%/include/petscversion.h.html
%%PFX%%/include/petscviewer.h
%%PFX%%/include/petscviewer.h.html
-%%PFX%%/include/vecimpl.h
-%%PFX%%/include/vecimpl.h.html
-%%PFX%%/lib/%%TARGET%%/libmpiuni.a
+%%PFX%%/include/private/pcimpl.h
+%%PFX%%/include/private/pcimpl.h.html
+%%PFX%%/include/private/petscimpl.h
+%%PFX%%/include/private/petscimpl.h.html
+%%PFX%%/include/private/vecimpl.h
+%%PFX%%/include/private/vecimpl.h.html
+%%PFX%%/include/zpetsc.h
+%%PFX%%/include/zpetsc.h.html
+%%MPIUNI%%%%PFX%%/lib/%%TARGET%%/libmpiuni.a
%%PFX%%/lib/%%TARGET%%/libpetsc.a
+%%PFX%%/lib/%%TARGET%%/libpetsc.so
%%PFX%%/lib/%%TARGET%%/libpetscdm.a
-%%MPI%%%%PFX%%/lib/%%TARGET%%/libpetscfortran.a
+%%PFX%%/lib/%%TARGET%%/libpetscdm.so
%%PFX%%/lib/%%TARGET%%/libpetscksp.a
+%%PFX%%/lib/%%TARGET%%/libpetscksp.so
%%PFX%%/lib/%%TARGET%%/libpetscmat.a
+%%PFX%%/lib/%%TARGET%%/libpetscmat.so
%%PFX%%/lib/%%TARGET%%/libpetscsnes.a
+%%PFX%%/lib/%%TARGET%%/libpetscsnes.so
%%PFX%%/lib/%%TARGET%%/libpetscts.a
+%%PFX%%/lib/%%TARGET%%/libpetscts.so
%%PFX%%/lib/%%TARGET%%/libpetscvec.a
+%%PFX%%/lib/%%TARGET%%/libpetscvec.so
@dirrm %%PFX%%/lib/%%TARGET%%
@dirrm %%PFX%%/lib
+@dirrm %%PFX%%/include/private
@dirrm %%PFX%%/include/petsc
@dirrm %%PFX%%/include/mpiuni
@dirrm %%PFX%%/include/finclude
-@dirrm %%PFX%%/include/f90impl
@dirrm %%PFX%%/include/adic
@dirrm %%PFX%%/include
@dirrm %%PFX%%/bmake/%%TARGET%%
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-18 18:40:43 +0000