10 files changed, 0 insertions, 404 deletions
diff --git a/science/hdf5-18/Makefile b/science/hdf5-18/Makefile
deleted file mode 100644
index b84a06008667..000000000000
--- a/science/hdf5-18/Makefile
+++ /dev/null
@@ -1,77 +0,0 @@
-# ex:ts=8
-# New ports collection makefile for:	HDF5
-# Date created:			Jul 7, 2002
-# Whom:				ijliao
-#
-# $FreeBSD$
-#
-
-PORTNAME=	hdf5
-PORTVERSION=	1.6.7
-PORTREVISION=	1
-CATEGORIES=	science archivers graphics
-MASTER_SITES=	ftp://ftp.hdfgroup.org/HDF5/current16/src/ \
-		ftp://ftp.hdfgroup.org/HDF5/prev-releases/ \
-		ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-${PORTVERSION}/src/ \
-		LOCAL/chinsan
-
-MAINTAINER=	koziol@hdfgroup.org
-COMMENT=	Hierarchical Data Format library (from NCSA)
-
-USE_LDCONFIG=	yes
-USE_AUTOTOOLS=	libtool:15
-GNU_CONFIGURE=	yes
-LIBTOOLFILES=	configure c++/configure
-CONFIGURE_ARGS=	--disable-debug \
-		--enable-cxx \
-		--enable-instrument \
-		--enable-production \
-		--enable-strict-format-checks \
-		--enable-threadsafe \
-		--with-pthread=/usr \
-		--with-ssl=/usr \
-		--with-zlib=/usr
-ALL_TARGET=	lib progs
-
-.include <bsd.port.pre.mk>
-
-.if defined(WITH_FORTRAN)
-LIBTOOLFILES+=		fortran/configure
-USE_FORTRAN=		yes
-CONFIGURE_ENV+=		F9X=${FC}
-CONFIGURE_ARGS+=	--enable-fortran
-PLIST_SUB+=		FORTRAN=""
-.else
-PLIST_SUB+=		FORTRAN="@comment "
-.endif
-
-.if ${ARCH} == "sparc64"
-BROKEN=		Does not compile on ${ARCH}
-.endif
-
-post-patch:
-	@${REINPLACE_CMD} -e 's|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure
-	@${REINPLACE_CMD} -e 's|-D_THREAD_SAFE|${PTHREAD_CFLAGS}|g' \
-		-e 's|[\$$]LDFLAGS -pthread|\$$LDFLAGS ${PTHREAD_LIBS}|g'  \
-			${WRKSRC}/config/freebsd ${WRKSRC}/c++/config/freebsd
-	@${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags
-	@${REINPLACE_CMD} -e 's|objformat=|#objformat=|g' \
-		-e 's|\(version_type=freebsd\)-.*|\1-elf|g' \
-			${WRKSRC}/aclocal.m4 ${WRKSRC}/configure
-.if defined(NOPORTEXAMPLES)
-.for i in . c++ hl fortran
-	@${REINPLACE_CMD} \
-		-e 's,\((cd examples && $$(MAKE) $$@) || exit 1;\),#\1,g' \
-			${WRKSRC}/${i}/Makefile.in
-.endfor
-.endif
-
-post-install:
-.for i in gif2h5 h52gif h5debug h5diff h5dump h5import h5jam h5ls h5repack h5repart h5unjam
-	@${STRIP_CMD} ${PREFIX}/bin/${i}
-.endfor
-
-regression-test: build
-	@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE} check
-
-.include <bsd.port.post.mk>
diff --git a/science/hdf5-18/distinfo b/science/hdf5-18/distinfo
deleted file mode 100644
index 5bbf08c91ba0..000000000000
--- a/science/hdf5-18/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 (hdf5-1.6.7.tar.gz) = 79027c67188e2e4131c5573771f477ce
-SHA256 (hdf5-1.6.7.tar.gz) = 9d9a98204f8c7d82f767f27f84db2520c04f5c73a4a6348c781a0d91a296e9a2
-SIZE (hdf5-1.6.7.tar.gz) = 5299219
diff --git a/science/hdf5-18/files/patch-c++::commence.in b/science/hdf5-18/files/patch-c++::commence.in
deleted file mode 100644
index 393adc30cc0f..000000000000
--- a/science/hdf5-18/files/patch-c++::commence.in
+++ /dev/null
@@ -1,31 +0,0 @@
---- c++/config/commence.in.orig	Mon Jun 30 16:19:35 2003
-+++ c++/config/commence.in	Mon Oct 20 23:44:08 2003
-@@ -27,7 +27,7 @@
- RM=rm -f
- CP=cp
- INSTALL=@INSTALL@
--INSTALL_PROGRAM=@INSTALL_PROGRAM@
-+INSTALL_PROGRAM=@INSTALL_SCRIPT@
- INSTALL_DATA=@INSTALL_DATA@
- TRACE=:
- 
-@@ -37,7 +37,7 @@
- bindir=@bindir@
- libdir=@libdir@
- includedir=@includedir@
--docdir=@exec_prefix@/doc
-+docdir=@exec_prefix@/share
- PUB_LIB=$(LIB)
- 
- ## Obtain default library; the current version of libtool does not fully
-@@ -60,8 +60,8 @@
- ## Optional variables. We must declare them here because Irix pmake
- ## complains if it sees a reference to a variable which has never been
- ## defined. The main makefile is free to redefine these to something else.
--DOCDIR=$(docdir)
--EXAMPLEDIR=$(docdir)/hdf5/examples/c++
-+DOCDIR=$(docdir)/doc/hdf5
-+EXAMPLEDIR=$(docdir)/examples/hdf5/c++
- LIB=
- LIB_SRC=
- LIB_OBJ=
diff --git a/science/hdf5-18/files/patch-commence.in b/science/hdf5-18/files/patch-commence.in
deleted file mode 100644
index 0795dcb37f66..000000000000
--- a/science/hdf5-18/files/patch-commence.in
+++ /dev/null
@@ -1,32 +0,0 @@
---- config/commence.in.orig	Tue Jul 22 23:39:43 2003
-+++ config/commence.in	Mon Oct 20 23:45:00 2003
-@@ -26,7 +26,7 @@
- RM=rm -f
- CP=cp
- INSTALL=@INSTALL@
--INSTALL_PROGRAM=@INSTALL_PROGRAM@
-+INSTALL_PROGRAM=@INSTALL_SCRIPT@
- INSTALL_DATA=@INSTALL_DATA@
- RUNSERIAL=@RUNSERIAL@
- RUNPARALLEL=@RUNPARALLEL@
-@@ -39,7 +39,7 @@
- bindir=@bindir@
- libdir=@libdir@
- includedir=@includedir@
--docdir=@exec_prefix@/doc
-+docdir=@exec_prefix@/share
- PUB_LIB=$(LIB)
- 
- ## Shared libraries
-@@ -57,9 +57,9 @@
- ## Optional variables. We must declare them here because Irix pmake
- ## complains if it sees a reference to a variable which has never been
- ## defined. The main makefile is free to redefine these to something else.
--DOCDIR=$(docdir)
-+DOCDIR=$(docdir)/doc/hdf5
- SUBDOCDIR=
--EXAMPLEDIR=$(docdir)/hdf5/examples/c
-+EXAMPLEDIR=$(docdir)/examples/hdf5/c
- LIB=
- LIB_SRC=
- LIB_OBJ=
diff --git a/science/hdf5-18/files/patch-fortran_H5f90i.h b/science/hdf5-18/files/patch-fortran_H5f90i.h
deleted file mode 100644
index 83f5855b8993..000000000000
--- a/science/hdf5-18/files/patch-fortran_H5f90i.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- fortran/src/H5f90i.h.orig	Thu Jul 12 21:26:46 2007
-+++ fortran/src/H5f90i.h	Thu Jul 12 21:27:18 2007
-@@ -71,7 +71,7 @@
- #endif /*APPLE*/
- 
- /* LINUX definitions */
--#if (defined(linux) || defined(__gnu_linux__) || defined(__linux__))
-+#if (defined(linux) || defined(__gnu_linux__) || defined(__linux__) || defined(__FreeBSD__))
- 
- /* Common definitions */
- typedef char              *_fcd;
diff --git a/science/hdf5-18/files/patch-fortran_commence.in b/science/hdf5-18/files/patch-fortran_commence.in
deleted file mode 100644
index 3331f07ce406..000000000000
--- a/science/hdf5-18/files/patch-fortran_commence.in
+++ /dev/null
@@ -1,31 +0,0 @@
---- fortran/config/commence.in.orig	Thu Jul 12 21:28:40 2007
-+++ fortran/config/commence.in	Thu Jul 12 21:33:56 2007
-@@ -47,7 +47,7 @@
- RM=rm -f
- CP=cp
- INSTALL=@INSTALL@
--INSTALL_PROGRAM=@INSTALL_PROGRAM@
-+INSTALL_PROGRAM=@INSTALL_SCRIPT@
- INSTALL_DATA=@INSTALL_DATA@
- PARALLEL=@PARALLEL@
- RUNSERIAL=@RUNSERIAL@
-@@ -62,7 +62,7 @@
- bindir=@bindir@
- libdir=@libdir@
- includedir=@includedir@
--docdir=@exec_prefix@/doc
-+docdir=@exec_prefix@/share
- PUB_LIB=$(LIB)
- 
- ## Shared libraries
-@@ -85,8 +85,8 @@
- ## Optional variables. We must declare them here because Irix pmake
- ## complains if it sees a reference to a variable which has never been
- ## defined. The main makefile is free to redefine these to something else.
--DOCDIR=$(docdir)
--EXAMPLEDIR=$(docdir)/hdf5/examples/fortran
-+DOCDIR=$(docdir)/doc/hdf5
-+EXAMPLEDIR=$(docdir)/examples/hdf5/fortran
- LIB=
- LIB_SRC=
- LIB_OBJ=
diff --git a/science/hdf5-18/files/patch-fortran_configure b/science/hdf5-18/files/patch-fortran_configure
deleted file mode 100644
index 7244f4e4f10a..000000000000
--- a/science/hdf5-18/files/patch-fortran_configure
+++ /dev/null
@@ -1,10 +0,0 @@
---- fortran/configure.orig	Thu Jul 12 21:36:24 2007
-+++ fortran/configure	Thu Jul 12 21:36:49 2007
-@@ -7602,6 +7602,7 @@
- 
- # This can be used to rebuild libtool when needed
- LIBTOOL_DEPS="$ac_aux_dir/ltmain.sh"
-+$ac_aux_dir/ltconfig $LIBTOOL_DEPS
- 
- # Always use our own libtool.
- LIBTOOL='$(SHELL) $(top_builddir)/libtool'
diff --git a/science/hdf5-18/files/patch-fortran_freebsd b/science/hdf5-18/files/patch-fortran_freebsd
deleted file mode 100644
index 329de570663c..000000000000
--- a/science/hdf5-18/files/patch-fortran_freebsd
+++ /dev/null
@@ -1,23 +0,0 @@
---- fortran/config/freebsd.orig	Thu Jul 12 21:23:06 2007
-+++ fortran/config/freebsd	Thu Jul 12 21:25:09 2007
-@@ -27,3 +27,20 @@
- 
- # Figure out compiler flags
- . $srcdir/config/gnu-flags
-+
-+#
-+# HDF5 integers
-+#
-+# 	R_LARGE is the number of digits for the bigest integer supported.
-+#	R_INTEGER is the number of digits in INTEGER
-+#
-+# (for the Linux architechture)
-+#
-+R_LARGE=18
-+R_INTEGER=9
-+HADDR_T='SELECTED_INT_KIND(R_LARGE)'
-+HSIZE_T='SELECTED_INT_KIND(R_LARGE)'
-+HSSIZE_T='SELECTED_INT_KIND(R_LARGE)'
-+HID_T='SELECTED_INT_KIND(R_INTEGER)'
-+SIZE_T='SELECTED_INT_KIND(R_INTEGER)'
-+OBJECT_NAMELEN_DEFAULT_F=-1
diff --git a/science/hdf5-18/pkg-descr b/science/hdf5-18/pkg-descr
deleted file mode 100644
index 35a0fc9e23cf..000000000000
--- a/science/hdf5-18/pkg-descr
+++ /dev/null
@@ -1,17 +0,0 @@
-HDF5 is a completely new Hierarchical Data Format product consisting of a
-data format specification and a supporting library implementation. HDF5 is
-designed to address some of the limitations of the older HDF product and to
-address current and anticipated requirements of modern systems and
-applications.
-
-HDF5 includes the following improvements.
-   - A new file format designed to address some of the deficiencies of HDF4.x,
-     particularly the need to store larger files and more objects per file.
-   - A simpler, more comprehensive data model that includes only two basic
-     structures: a multidimensional array of record structures, and a grouping
-     structure.
-   - A simpler, better-engineered library and API, with improved support for
-     parallel I/O, threads, and other requirements imposed by modern systems
-     and applications.
-
-WWW: http://hdf.ncsa.uiuc.edu/HDF5/
diff --git a/science/hdf5-18/pkg-plist b/science/hdf5-18/pkg-plist
deleted file mode 100644
index ac51c104c1bd..000000000000
--- a/science/hdf5-18/pkg-plist
+++ /dev/null
@@ -1,169 +0,0 @@
-bin/gif2h5
-bin/h52gif
-bin/h5c++
-bin/h5cc
-bin/h5debug
-bin/h5diff
-bin/h5dump
-%%FORTRAN%%bin/h5fc
-bin/h5import
-bin/h5jam
-bin/h5ls
-bin/h5redeploy
-bin/h5repack
-bin/h5repart
-bin/h5unjam
-include/H5ACpublic.h
-include/H5AbstractDs.h
-include/H5Apublic.h
-include/H5ArrayType.h
-include/H5AtomType.h
-include/H5Attribute.h
-include/H5Bpublic.h
-include/H5Classes.h
-include/H5CommonFG.h
-include/H5CompType.h
-include/H5Cpp.h
-include/H5CppDoc.h
-include/H5Cpublic.h
-include/H5DataSet.h
-include/H5DataSpace.h
-include/H5DataType.h
-include/H5DcreatProp.h
-include/H5Dpublic.h
-include/H5DxferProp.h
-include/H5EnumType.h
-include/H5Epublic.h
-include/H5Exception.h
-include/H5FDcore.h
-include/H5FDfamily.h
-include/H5FDgass.h
-include/H5FDlog.h
-include/H5FDmpi.h
-include/H5FDmpio.h
-include/H5FDmpiposix.h
-include/H5FDmulti.h
-include/H5FDpublic.h
-include/H5FDsec2.h
-include/H5FDsrb.h
-include/H5FDstdio.h
-include/H5FaccProp.h
-include/H5FcreatProp.h
-include/H5File.h
-include/H5FloatType.h
-include/H5Fpublic.h
-include/H5Gpublic.h
-include/H5Group.h
-include/H5HGpublic.h
-include/H5HLpublic.h
-include/H5IM.h
-include/H5IdComponent.h
-include/H5Include.h
-include/H5IntType.h
-include/H5Ipublic.h
-include/H5LT.h
-include/H5Library.h
-include/H5MMpublic.h
-include/H5Object.h
-include/H5Opublic.h
-include/H5Ppublic.h
-include/H5PredType.h
-include/H5PropList.h
-include/H5Rpublic.h
-include/H5Spublic.h
-include/H5StrType.h
-include/H5TA.h
-include/H5Tpublic.h
-include/H5VarLenType.h
-include/H5Zpublic.h
-include/H5api_adpt.h
-include/H5cxx_pubconf.h
-include/H5pubconf.h
-%%FORTRAN%%include/H5pubconf_fortran.h
-include/H5public.h
-include/hdf5.h
-%%FORTRAN%%lib/h5a.mod
-%%FORTRAN%%lib/h5d.mod
-%%FORTRAN%%lib/h5e.mod
-%%FORTRAN%%lib/h5f.mod
-%%FORTRAN%%lib/h5fortran_flags.mod
-%%FORTRAN%%lib/h5fortran_types.mod
-%%FORTRAN%%lib/h5g.mod
-%%FORTRAN%%lib/h5global.mod
-%%FORTRAN%%lib/h5i.mod
-%%FORTRAN%%lib/h5lib.mod
-%%FORTRAN%%lib/h5p.mod
-%%FORTRAN%%lib/h5r.mod
-%%FORTRAN%%lib/h5s.mod
-%%FORTRAN%%lib/h5t.mod
-%%FORTRAN%%lib/h5z.mod
-%%FORTRAN%%lib/hdf5.mod
-lib/libhdf5.a
-lib/libhdf5.la
-lib/libhdf5.settings
-lib/libhdf5.so
-lib/libhdf5.so.0
-lib/libhdf5_cpp.a
-lib/libhdf5_cpp.la
-%%FORTRAN%%lib/libhdf5_fortran.a
-%%FORTRAN%%lib/libhdf5_fortran.la
-%%FORTRAN%%lib/libhdf5_fortran.settings
-lib/libhdf5_hl.a
-lib/libhdf5_hl.la
-lib/libhdf5_hl.so
-lib/libhdf5_hl.so.0
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/chunks.cpp
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/compound.cpp
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/create.cpp
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/extend_ds.cpp
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5group.cpp
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/readdata.cpp
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/strtype.cpp
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/writedata.cpp
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_image1.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_image2.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_lite1.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_lite2.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_lite3.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_01.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_02.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_03.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_04.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_05.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_06.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_07.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_08.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_09.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_10.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_11.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_12.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_attribute.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_chunk_read.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_compound.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_drivers.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_extend_write.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_group.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_mount.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_read.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_reference.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_select.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_write.c
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ph5example.c
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/attrexample.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/compound.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/dsetexample.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/fileexample.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/groupexample.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpdsetexample.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpit.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpsexample.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/hyperslab.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/mountexample.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/refobjexample.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/refregexample.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/rwdsetexample.f90
-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/selectele.f90
-%%FORTRAN%%%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/fortran
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%