diff options
Diffstat (limited to 'science/hs-bio/files/patch-Bio__GFF3__FeatureHierSequences.hs')
| -rw-r--r-- | science/hs-bio/files/patch-Bio__GFF3__FeatureHierSequences.hs | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/science/hs-bio/files/patch-Bio__GFF3__FeatureHierSequences.hs b/science/hs-bio/files/patch-Bio__GFF3__FeatureHierSequences.hs new file mode 100644 index 000000000000..6f83130df055 --- /dev/null +++ b/science/hs-bio/files/patch-Bio__GFF3__FeatureHierSequences.hs @@ -0,0 +1,19 @@ +--- ./Bio/GFF3/FeatureHierSequences.hs.orig 2012-02-23 14:45:38.000000000 +0100 ++++ ./Bio/GFF3/FeatureHierSequences.hs 2013-05-01 00:28:58.000000000 +0200 +@@ -15,6 +15,7 @@ + import qualified Data.Map as M + import Data.Maybe + import qualified Data.Set as S ++import System.IO.Error (catchIOError) + + import Bio.Sequence.SeqData + import Bio.Sequence.Fasta +@@ -72,7 +73,7 @@ + return $ Seq seqname sequ Nothing + + catchIOErrors :: IO a -> ErrorT String IO a +-catchIOErrors m = ErrorT { runErrorT = liftM Right m `catch` (return . Left . show) } ++catchIOErrors m = ErrorT { runErrorT = liftM Right m `catchIOError` (return . Left . show) } + + runGFF :: FilePath -> (ErrorT String (Reader FeatureHierSequences) a) -> ErrorT String IO a + runGFF gffname m = do gff <- catchIOErrors $ LBS.readFile gffname |