diff options
Diffstat (limited to 'science')
118 files changed, 541 insertions, 541 deletions
diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile index 5307df2aa3b6..e5312c14d30a 100644 --- a/science/InsightToolkit/Makefile +++ b/science/InsightToolkit/Makefile @@ -11,13 +11,13 @@ COMMENT= Insight Toolkit LICENSE= APACHE20 -LIB_DEPENDS= libturbojpeg.so:${PORTSDIR}/graphics/libjpeg-turbo \ - libgdcmCommon.so:${PORTSDIR}/devel/gdcm \ - libexpat.so:${PORTSDIR}/textproc/expat2 \ - libfftw.so:${PORTSDIR}/math/fftw \ - libhdf5.so:${PORTSDIR}/science/hdf5 \ - libpng.so:${PORTSDIR}/graphics/png \ - libtiff.so:${PORTSDIR}/graphics/tiff +LIB_DEPENDS= libturbojpeg.so:graphics/libjpeg-turbo \ + libgdcmCommon.so:devel/gdcm \ + libexpat.so:textproc/expat2 \ + libfftw.so:math/fftw \ + libhdf5.so:science/hdf5 \ + libpng.so:graphics/png \ + libtiff.so:graphics/tiff USES= cmake:outsource CMAKE_ARGS+= -DBUILD_SHARED_LIBS:BOOL=ON \ diff --git a/science/R-cran-DCluster/Makefile b/science/R-cran-DCluster/Makefile index acf461739698..1c72d7700061 100644 --- a/science/R-cran-DCluster/Makefile +++ b/science/R-cran-DCluster/Makefile @@ -12,7 +12,7 @@ COMMENT= Functions for the detection of spatial clusters of diseases LICENSE= GPLv2 GPLv3 LICENSE_COMB= dual -RUN_DEPENDS= R-cran-spdep>0:${PORTSDIR}/math/R-cran-spdep +RUN_DEPENDS= R-cran-spdep>0:math/R-cran-spdep USES= cran:auto-plist diff --git a/science/R-cran-Epi/Makefile b/science/R-cran-Epi/Makefile index 1130a2fee5ab..31cf952817f7 100644 --- a/science/R-cran-Epi/Makefile +++ b/science/R-cran-Epi/Makefile @@ -11,9 +11,9 @@ COMMENT= Package for statistical analysis in epidemiology LICENSE= GPLv2 -RUN_DEPENDS= R-cran-cmprsk>0:${PORTSDIR}/science/R-cran-cmprsk \ - R-cran-etm>0:${PORTSDIR}/science/R-cran-etm \ - R-cran-plyr>0:${PORTSDIR}/devel/R-cran-plyr +RUN_DEPENDS= R-cran-cmprsk>0:science/R-cran-cmprsk \ + R-cran-etm>0:science/R-cran-etm \ + R-cran-plyr>0:devel/R-cran-plyr USES= cran:auto-plist diff --git a/science/afni/Makefile b/science/afni/Makefile index 14254ed12663..f9bfdb597308 100644 --- a/science/afni/Makefile +++ b/science/afni/Makefile @@ -19,17 +19,17 @@ COMMENT= Advanced Functional Neuro Imaging LICENSE= GPLv2 -BUILD_DEPENDS= gm4:${PORTSDIR}/devel/m4 -LIB_DEPENDS= libXm.so:${PORTSDIR}/x11-toolkits/open-motif \ - libR.so:${PORTSDIR}/math/R \ - libgsl.so:${PORTSDIR}/math/gsl \ - libnetcdff.so:${PORTSDIR}/science/netcdf-fortran \ - libxml2.so:${PORTSDIR}/textproc/libxml2 \ - libf2c.so:${PORTSDIR}/lang/f2c -RUN_DEPENDS= mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \ - ppmtogif:${PORTSDIR}/graphics/netpbm \ - endian:${PORTSDIR}/sysutils/endian \ - qhull:${PORTSDIR}/math/qhull5 +BUILD_DEPENDS= gm4:devel/m4 +LIB_DEPENDS= libXm.so:x11-toolkits/open-motif \ + libR.so:math/R \ + libgsl.so:math/gsl \ + libnetcdff.so:science/netcdf-fortran \ + libxml2.so:textproc/libxml2 \ + libf2c.so:lang/f2c +RUN_DEPENDS= mpeg_encode:multimedia/mpeg_encode \ + ppmtogif:graphics/netpbm \ + endian:sysutils/endian \ + qhull:math/qhull5 CONFLICTS= im-[0-9]* \ nifticlib-[0-9]* \ diff --git a/science/avogadro/Makefile b/science/avogadro/Makefile index 965055ba025c..9831e3226a7c 100644 --- a/science/avogadro/Makefile +++ b/science/avogadro/Makefile @@ -13,8 +13,8 @@ COMMENT= Advanced molecular editor and viewer LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/COPYING -BUILD_DEPENDS= eigen2>2:${PORTSDIR}/math/eigen2 -LIB_DEPENDS= libopenbabel.so:${PORTSDIR}/science/openbabel +BUILD_DEPENDS= eigen2>2:math/eigen2 +LIB_DEPENDS= libopenbabel.so:science/openbabel USES= cmake desktop-file-utils pkgconfig tar:bzip2 USE_GL= glu gl @@ -35,10 +35,10 @@ OPTIONS_SUB= yes PYTHON_USES= python:2 PYTHON_BUILD_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}sip>0:${PORTSDIR}/devel/py-sip -PYTHON_LIB_DEPENDS= libboost_python.so:${PORTSDIR}/devel/boost-python-libs + ${PYTHON_PKGNAMEPREFIX}sip>0:devel/py-sip +PYTHON_LIB_DEPENDS= libboost_python.so:devel/boost-python-libs PYTHON_RUN_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}sip>0:${PORTSDIR}/devel/py-sip + ${PYTHON_PKGNAMEPREFIX}sip>0:devel/py-sip PYTHON_CMAKE_ON= -DENABLE_PYTHON=ON \ -DPYTHON_INCLUDE_DIR:PATH=${WRKDIR}/include/${PYTHON_VERSION} PYTHON_CMAKE_OFF= -DENABLE_PYTHON=OFF diff --git a/science/bddsolve/Makefile b/science/bddsolve/Makefile index f89e303ed688..be88cfe6a2cb 100644 --- a/science/bddsolve/Makefile +++ b/science/bddsolve/Makefile @@ -11,8 +11,8 @@ DISTNAME= ${PORTNAME}-source-${PORTVERSION} MAINTAINER= ed@FreeBSD.org COMMENT= BDD-based satisfiability and reachability solver -LIB_DEPENDS+= libbdd.so:${PORTSDIR}/science/buddy \ - libboost_program_options.so:${PORTSDIR}/devel/boost-libs +LIB_DEPENDS+= libbdd.so:science/buddy \ + libboost_program_options.so:devel/boost-libs USES= zip NO_WRKSUBDIR= yes diff --git a/science/bodr/Makefile b/science/bodr/Makefile index 56071d41b954..8d8888b41165 100644 --- a/science/bodr/Makefile +++ b/science/bodr/Makefile @@ -9,7 +9,7 @@ MASTER_SITES= SF MAINTAINER= ports@FreeBSD.org COMMENT= Chemistry data like element and isotope properties, atomic radii, etc -BUILD_DEPENDS= xsltproc:${PORTSDIR}/textproc/libxslt +BUILD_DEPENDS= xsltproc:textproc/libxslt OPTIONS_DEFINE= DOCS diff --git a/science/brian/Makefile b/science/brian/Makefile index 64240c490dc8..6fa2c5894e6e 100644 --- a/science/brian/Makefile +++ b/science/brian/Makefile @@ -9,9 +9,9 @@ MASTER_SITES= CHEESESHOP MAINTAINER= wen@FreeBSD.org COMMENT= Clock-driven simulator for spiking neural networks -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.1.0:${PORTSDIR}/math/py-numpy \ - ${PYTHON_PKGNAMEPREFIX}scipy>=0.6.0:${PORTSDIR}/science/py-scipy \ - ${PYTHON_PKGNAMEPREFIX}matplotlib>=0.90.1:${PORTSDIR}/math/py-matplotlib +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.1.0:math/py-numpy \ + ${PYTHON_PKGNAMEPREFIX}scipy>=0.6.0:science/py-scipy \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=0.90.1:math/py-matplotlib RUN_DEPENDS:= ${BUILD_DEPENDS} USES= python zip diff --git a/science/cdo/Makefile b/science/cdo/Makefile index b7be329aaf38..a8f4cbab7a9f 100644 --- a/science/cdo/Makefile +++ b/science/cdo/Makefile @@ -39,25 +39,25 @@ USES= gmake libtool pathfix CGRIBEX_CONFIGURE_OFF= --without-cgribex CGRIBEX_CONFIGURE_ON= --with-cgribex=${LOCALBASE} -CGRIBEX_LIB_DEPENDS= libcgribex.so:${PORTSDIR}/science/cgribex +CGRIBEX_LIB_DEPENDS= libcgribex.so:science/cgribex HDF5_CONFIGURE_OFF= --without-hdf5 HDF5_CONFIGURE_ON= --with-hdf5=${LOCALBASE} -HDF5_LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 +HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 JASPER_CONFIGURE_OFF= --without-jasper JASPER_CONFIGURE_ON= --with-jasper=${LOCALBASE} -JASPER_LIB_DEPENDS= libjasper.so:${PORTSDIR}/graphics/jasper +JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper NETCDF_CONFIGURE_OFF= --without-netcdf NETCDF_CONFIGURE_ON= --with-netcdf=${LOCALBASE} -NETCDF_LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf +NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf PROJ_CONFIGURE_OFF= --without-proj PROJ_CONFIGURE_ON= --with-proj=${LOCALBASE} -PROJ_LIB_DEPENDS= libproj.so:${PORTSDIR}/graphics/proj +PROJ_LIB_DEPENDS= libproj.so:graphics/proj SZIP_CONFIGURE_OFF= --without-szlib SZIP_CONFIGURE_ON= --with-szlib=${LOCALBASE} -SZIP_LIB_DEPENDS= libsz.so:${PORTSDIR}/science/szip +SZIP_LIB_DEPENDS= libsz.so:science/szip UDUNITS_CONFIGURE_OFF= --without-udunits2 UDUNITS_CONFIGURE_ON= --with-udunits2=${LOCALBASE} -UDUNITS_LIB_DEPENDS= libudunits2.so:${PORTSDIR}/science/udunits +UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits .include <bsd.port.pre.mk> diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile index d8aecfec29db..ea7b26489b95 100644 --- a/science/cgnslib/Makefile +++ b/science/cgnslib/Makefile @@ -31,7 +31,7 @@ OPTIONS_DEFAULT=HDF5 TESTS TOOLS .include <bsd.port.options.mk> .if ${PORT_OPTIONS:MHDF5} -LIB_DEPENDS+= libhdf5.so:${PORTSDIR}/science/hdf5 +LIB_DEPENDS+= libhdf5.so:science/hdf5 CMAKE_ARGS+= -DCGNS_ENABLE_HDF5:BOOL=TRUE -DHDF5_NEED_ZLIB:BOOL=TRUE \ -DHDF5_INCLUDE_PATH:PATH="${LOCALBASE}/include" PLIST_SUB= HDF5="" diff --git a/science/cgribex/Makefile b/science/cgribex/Makefile index 02d384d0ab1d..d0a6b661eacc 100644 --- a/science/cgribex/Makefile +++ b/science/cgribex/Makefile @@ -12,8 +12,8 @@ COMMENT= Lightweight GRIBEX in C with portable Fortran interface LICENSE= GPLv2 -LIB_DEPENDS= libjasper.so:${PORTSDIR}/graphics/jasper \ - libsz.so:${PORTSDIR}/science/szip +LIB_DEPENDS= libjasper.so:graphics/jasper \ + libsz.so:science/szip CONFIGURE_ARGS= --with-jasper=${LOCALBASE} \ --with-szlib=${LOCALBASE} diff --git a/science/chemical-mime-data/Makefile b/science/chemical-mime-data/Makefile index 2f894cf2864d..53179ad720fb 100644 --- a/science/chemical-mime-data/Makefile +++ b/science/chemical-mime-data/Makefile @@ -10,7 +10,7 @@ MASTER_SITES= SF/chemical-mime/${PORTNAME}/${PORTVERSION} MAINTAINER= kwm@FreeBSD.org COMMENT= Collection of chemical MIME types for UNIX desktops -BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/librsvg-2.0.pc:${PORTSDIR}/graphics/librsvg2 +BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/librsvg-2.0.pc:graphics/librsvg2 USES= gettext-tools gmake pkgconfig tar:bzip2 shared-mime-info USE_GNOME= gnomemimedata intlhack libxslt:build diff --git a/science/chemtool-devel/Makefile b/science/chemtool-devel/Makefile index 4cbee98e48c4..67506aae82b6 100644 --- a/science/chemtool-devel/Makefile +++ b/science/chemtool-devel/Makefile @@ -12,8 +12,8 @@ DISTNAME= ct17a15 MAINTAINER= maho@FreeBSD.org COMMENT= Drawing organic molecules easily and store them (developer version) -LIB_DEPENDS= libEMF.so:${PORTSDIR}/graphics/libemf -RUN_DEPENDS= transfig:${PORTSDIR}/print/transfig +LIB_DEPENDS= libEMF.so:graphics/libemf +RUN_DEPENDS= transfig:print/transfig WRKSRC= ${WRKDIR}/${PORTNAME}-1.7alpha15/ USE_GNOME= gtk20 diff --git a/science/chemtool/Makefile b/science/chemtool/Makefile index 823de2da6598..737a67df587b 100644 --- a/science/chemtool/Makefile +++ b/science/chemtool/Makefile @@ -10,8 +10,8 @@ MASTER_SITES= http://ruby.chemie.uni-freiburg.de/~martin/chemtool/ MAINTAINER= maho@FreeBSD.org COMMENT= Draw organic molecules easily and store them -LIB_DEPENDS= libEMF.so:${PORTSDIR}/graphics/libemf -RUN_DEPENDS= transfig:${PORTSDIR}/print/transfig +LIB_DEPENDS= libEMF.so:graphics/libemf +RUN_DEPENDS= transfig:print/transfig USES= gmake pkgconfig USE_GNOME= gtk20 diff --git a/science/dlpoly-classic/Makefile b/science/dlpoly-classic/Makefile index 8d69c2840975..f8c8e4ca08a0 100644 --- a/science/dlpoly-classic/Makefile +++ b/science/dlpoly-classic/Makefile @@ -12,8 +12,8 @@ DISTNAME= dl_class_${PORTVERSION} MAINTAINER= bacon4000@gmail.com COMMENT= Molecular dynamics simulation package -BUILD_DEPENDS= ${LOCALBASE}/mpi/openmpi/bin/mpif90:${PORTSDIR}/net/openmpi -RUN_DEPENDS= ${LOCALBASE}/mpi/openmpi/bin/mpirun:${PORTSDIR}/net/openmpi +BUILD_DEPENDS= ${LOCALBASE}/mpi/openmpi/bin/mpif90:net/openmpi +RUN_DEPENDS= ${LOCALBASE}/mpi/openmpi/bin/mpirun:net/openmpi OPTIONS_DEFINE= GUI DOCS EXAMPLES OPTIONS_DEFAULT= GUI diff --git a/science/ecs/Makefile b/science/ecs/Makefile index 22f89dc2ccfe..553535f67ff5 100644 --- a/science/ecs/Makefile +++ b/science/ecs/Makefile @@ -12,11 +12,11 @@ COMMENT= Code_Saturne Preprocessor LICENSE= GPLv2 -BUILD_DEPENDS+= ${LOCALBASE}/lib/libscotch.a:${PORTSDIR}/cad/scotch -LIB_DEPENDS= libmed.so:${PORTSDIR}/french/med \ - libbft.so:${PORTSDIR}/science/bft \ - libhdf5.so:${PORTSDIR}/science/hdf5 \ - libcgns.so:${PORTSDIR}/science/cgnslib +BUILD_DEPENDS+= ${LOCALBASE}/lib/libscotch.a:cad/scotch +LIB_DEPENDS= libmed.so:french/med \ + libbft.so:science/bft \ + libhdf5.so:science/hdf5 \ + libcgns.so:science/cgnslib WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} @@ -42,7 +42,7 @@ NLS_USES= gettext iconv NLS_CONFIGURE_ENABLE= nls DOCS_USE= TEX=tex:build -DOCS_BUILD_DEPENDS= fig2dev:${PORTSDIR}/print/transfig +DOCS_BUILD_DEPENDS= fig2dev:print/transfig .include <bsd.port.options.mk> @@ -59,10 +59,10 @@ MAKE_JOBS_UNSAFE=yes .if exists(${LOCALBASE}/bin/graphchk) # The regular metis is present, so we cannot depend on metis-edf -LIB_DEPENDS+= libmetis.so.1:${PORTSDIR}/math/metis4 +LIB_DEPENDS+= libmetis.so.1:math/metis4 .else # Prefer metis-edf to avoid conflict with Code_Aster -LIB_DEPENDS+= libmetis.so.0:${PORTSDIR}/math/metis-edf +LIB_DEPENDS+= libmetis.so.0:math/metis-edf .endif pre-configure: diff --git a/science/fisicalab/Makefile b/science/fisicalab/Makefile index dda5c2bfd81f..4dfdf9cdc06c 100644 --- a/science/fisicalab/Makefile +++ b/science/fisicalab/Makefile @@ -11,7 +11,7 @@ COMMENT= Physics simulation program for educational use LICENSE= GPLv3 -LIB_DEPENDS+= libgsl.so:${PORTSDIR}/math/gsl +LIB_DEPENDS+= libgsl.so:math/gsl USES= gnustep GNU_CONFIGURE= yes diff --git a/science/fvcom-mpi/Makefile b/science/fvcom-mpi/Makefile index 4882999dc12a..3a2cb929cab5 100644 --- a/science/fvcom-mpi/Makefile +++ b/science/fvcom-mpi/Makefile @@ -8,7 +8,7 @@ MPIPREFIX= mpi/openmpi/ MAINTAINER= bacon4000@gmail.com -LIB_DEPENDS+= libmpi.so:${PORTSDIR}/net/openmpi +LIB_DEPENDS+= libmpi.so:net/openmpi MASTERDIR= ${.CURDIR}/../fvcom diff --git a/science/fvcom/Makefile b/science/fvcom/Makefile index fc3ea906a283..318d2134cf6a 100644 --- a/science/fvcom/Makefile +++ b/science/fvcom/Makefile @@ -13,9 +13,9 @@ MAINTAINER= bacon4000@gmail.com COMMENT= Unstructured Grid Finite Volume Coastal Ocean Model # Check netcdf lib for Fortran support! -LIB_DEPENDS+= libnetcdff.so:${PORTSDIR}/science/netcdf-fortran \ - liblapack.so:${PORTSDIR}/math/lapack \ - libblas.so:${PORTSDIR}/math/lapack +LIB_DEPENDS+= libnetcdff.so:science/netcdf-fortran \ + liblapack.so:math/lapack \ + libblas.so:math/lapack USES= fortran USE_GCC= yes diff --git a/science/fvm/Makefile b/science/fvm/Makefile index ff8c89926952..c8d52fa5df93 100644 --- a/science/fvm/Makefile +++ b/science/fvm/Makefile @@ -12,10 +12,10 @@ COMMENT= Code_Saturne Finite Volume Mesh LICENSE= LGPL21 -LIB_DEPENDS= libmed.so:${PORTSDIR}/french/med \ - libbft.so:${PORTSDIR}/science/bft \ - libhdf5.so:${PORTSDIR}/science/hdf5 \ - libcgns.so:${PORTSDIR}/science/cgnslib +LIB_DEPENDS= libmed.so:french/med \ + libbft.so:science/bft \ + libhdf5.so:science/hdf5 \ + libcgns.so:science/cgnslib WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} @@ -29,16 +29,16 @@ CONFIGURE_ARGS= --with-bft=${LOCALBASE} \ INSTALL_TARGET= install-strip .if defined(WITH_LAM) -BUILD_DEPENDS+= ${LOCALBASE}/lib/liblam.a:${PORTSDIR}/net/lam -RUN_DEPENDS+= ${LOCALBASE}/bin/lamboot:${PORTSDIR}/net/lam +BUILD_DEPENDS+= ${LOCALBASE}/lib/liblam.a:net/lam +RUN_DEPENDS+= ${LOCALBASE}/bin/lamboot:net/lam CONFIGURE_ARGS+= --with-mpi=${LOCALBASE} .elif defined(WITH_OPENMPI) -BUILD_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpicc:${PORTSDIR}/net/openmpi -RUN_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpirun:${PORTSDIR}/net/openmpi +BUILD_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpicc:net/openmpi +RUN_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpirun:net/openmpi CONFIGURE_ARGS+= --with-mpi=${LOCALBASE}/mpi/openmpi .else -BUILD_DEPENDS+= ${LOCALBASE}/bin/mpicc:${PORTSDIR}/net/mpich2 -RUN_DEPENDS+= ${LOCALBASE}/bin/mpirun:${PORTSDIR}/net/mpich2 +BUILD_DEPENDS+= ${LOCALBASE}/bin/mpicc:net/mpich2 +RUN_DEPENDS+= ${LOCALBASE}/bin/mpirun:net/mpich2 CONFIGURE_ARGS+= --with-mpi=${LOCALBASE} # Do not directly depend on Fortran, but FFLAGS needed to link with mpich2 USES+= fortran diff --git a/science/gchemutils/Makefile b/science/gchemutils/Makefile index 5cb08b653749..a6508b33f752 100644 --- a/science/gchemutils/Makefile +++ b/science/gchemutils/Makefile @@ -10,13 +10,13 @@ DISTNAME= gnome-chemistry-utils-${PORTVERSION} MAINTAINER= kwm@FreeBSD.org COMMENT= C++ classes and Gtk3 widgets related to chemistry -BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/bodr.pc:${PORTSDIR}/science/bodr \ - ${LOCALBASE}/libdata/pkgconfig/chemical-mime-data.pc:${PORTSDIR}/science/chemical-mime-data -LIB_DEPENDS= libgtkglext-x11-1.0.so:${PORTSDIR}/x11-toolkits/gtkglext \ - libopenbabel.so:${PORTSDIR}/science/openbabel \ - libgoffice-0.10.so:${PORTSDIR}/devel/goffice010 -RUN_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/bodr.pc:${PORTSDIR}/science/bodr \ - ${LOCALBASE}/libdata/pkgconfig/chemical-mime-data.pc:${PORTSDIR}/science/chemical-mime-data +BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/bodr.pc:science/bodr \ + ${LOCALBASE}/libdata/pkgconfig/chemical-mime-data.pc:science/chemical-mime-data +LIB_DEPENDS= libgtkglext-x11-1.0.so:x11-toolkits/gtkglext \ + libopenbabel.so:science/openbabel \ + libgoffice-0.10.so:devel/goffice010 +RUN_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/bodr.pc:science/bodr \ + ${LOCALBASE}/libdata/pkgconfig/chemical-mime-data.pc:science/chemical-mime-data PORTSCOUT= limitw:1,even @@ -52,7 +52,7 @@ XUL_CONFIGURE_OFF=--disable-mozilla-plugin .include <bsd.port.options.mk> .if ${PORT_OPTIONS:MGNUMERIC} || exists(${LOCALBASE}/lib/libspreadsheet.so) -LIB_DEPENDS+= libspreadsheet.so:${PORTSDIR}/math/gnumeric +LIB_DEPENDS+= libspreadsheet.so:math/gnumeric PLIST_SUB+= GNUMERIC="" .else PLIST_SUB+= GNUMERIC="@comment " diff --git a/science/getdp/Makefile b/science/getdp/Makefile index e5c583358436..dab4b57ac342 100644 --- a/science/getdp/Makefile +++ b/science/getdp/Makefile @@ -13,8 +13,8 @@ COMMENT= Rather general finite element solver using mixed finite elements LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/README.txt -LIB_DEPENDS= libgsl.so:${PORTSDIR}/math/gsl \ - liblapack.so:${PORTSDIR}/math/lapack +LIB_DEPENDS= libgsl.so:math/gsl \ + liblapack.so:math/lapack USES= fortran gmake tar:tgz cmake WANT_PERL= yes diff --git a/science/ghemical/Makefile b/science/ghemical/Makefile index a82cd92d82ec..4b1eb4cfbb18 100644 --- a/science/ghemical/Makefile +++ b/science/ghemical/Makefile @@ -13,13 +13,13 @@ COMMENT= Computational chemistry software package LICENSE= GPLv2+ -LIB_DEPENDS= libmopac7.so:${PORTSDIR}/biology/mopac \ - libghemical.so:${PORTSDIR}/science/libghemical \ - liboglappth.so:${PORTSDIR}/science/liboglappth \ - libmpqc.so:${PORTSDIR}/science/mpqc \ - libopenbabel.so:${PORTSDIR}/science/openbabel \ - libgtkglext-x11-1.0.so:${PORTSDIR}/x11-toolkits/gtkglext -RUN_DEPENDS= xdg-open:${PORTSDIR}/devel/xdg-utils +LIB_DEPENDS= libmopac7.so:biology/mopac \ + libghemical.so:science/libghemical \ + liboglappth.so:science/liboglappth \ + libmpqc.so:science/mpqc \ + libopenbabel.so:science/openbabel \ + libgtkglext-x11-1.0.so:x11-toolkits/gtkglext +RUN_DEPENDS= xdg-open:devel/xdg-utils USES= fortran gettext gmake pathfix pkgconfig USE_GNOME= gtk20 libglade2 intltool diff --git a/science/ghmm/Makefile b/science/ghmm/Makefile index 2fbe5d861e78..f79da002a8cd 100644 --- a/science/ghmm/Makefile +++ b/science/ghmm/Makefile @@ -11,7 +11,7 @@ COMMENT= General Hidden Markov Model Library in C LICENSE= GPLv3 -#BUILD_DEPENDS= swig:${PORTSDIR}/devel/swig13 +#BUILD_DEPENDS= swig:devel/swig13 GNU_CONFIGURE= yes INSTALL_TARGET= install-strip diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile index daae60a528be..041001405f1d 100644 --- a/science/gnudatalanguage/Makefile +++ b/science/gnudatalanguage/Makefile @@ -15,10 +15,10 @@ COMMENT?= GDL, a free IDL compatible incremental compiler LICENSE= GPLv2 -LIB_DEPENDS+= libplplot.so:${PORTSDIR}/math/plplot \ - libpng.so:${PORTSDIR}/graphics/png \ - libps.so:${PORTSDIR}/print/pslib \ - libgsl.so:${PORTSDIR}/math/gsl +LIB_DEPENDS+= libplplot.so:math/plplot \ + libpng.so:graphics/png \ + libps.so:print/pslib \ + libgsl.so:math/gsl USE_WX= 2.8 USE_XORG= x11 sm ice xext @@ -42,56 +42,56 @@ OPTIONS_DEFINE= EIGEN EXAMPLES FFTW GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 MPICH2 NET OPTIONS_DEFAULT=EIGEN EXAMPLES FFTW GRAPHICSMAGICK GRIB HDF5 LIBPROJ4 NETCDF PYTHON UDUNITS EIGEN_DESC= Eigen3 support (boost performance) -EIGEN_BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/eigen3.pc:${PORTSDIR}/math/eigen3 +EIGEN_BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/eigen3.pc:math/eigen3 EIGEN_CMAKE_ON= -DEIGEN3:BOOL=YES EIGEN_CMAKE_OFF= -DEIGEN3:BOOL=NO -FFTW_LIB_DEPENDS= libfftw3.so:${PORTSDIR}/math/fftw3 \ - libfftw3f.so:${PORTSDIR}/math/fftw3-float +FFTW_LIB_DEPENDS= libfftw3.so:math/fftw3 \ + libfftw3f.so:math/fftw3-float FFTW_CMAKE_ON= -DFFTW:BOOL=YES FFTW_CMAKE_OFF= -DFFTW:BOOL=NO GRAPHICSMAGICK_DESC= Support GraphicsMagick -GRAPHICSMAGICK_LIB_DEPENDS= libGraphicsMagick.so:${PORTSDIR}/graphics/GraphicsMagick +GRAPHICSMAGICK_LIB_DEPENDS= libGraphicsMagick.so:graphics/GraphicsMagick GRAPHICSMAGICK_CMAKE_ON= -DGRAPHICSMAGICK:BOOL=YES GRAPHICSMAGICK_CMAKE_OFF= -DGRAPHICSMAGICK:BOOL=NO GRIB_DESC= Support GRIB messages -GRIB_LIB_DEPENDS= libgrib_api.so:${PORTSDIR}/science/grib_api +GRIB_LIB_DEPENDS= libgrib_api.so:science/grib_api GRIB_CMAKE_ON= -DGRIB:BOOL=YES GRIB_CMAKE_OFF= -DGRIB:BOOL=NO -HDF5_LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 +HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_CMAKE_ON= -DHDF5:BOOL=YES HDF5_CMAKE_OFF= -DHDF5:BOOL=NO -DHDF:BOOL=NO LIBPROJ4_DESC= Support cartographic processes -LIBPROJ4_LIB_DEPENDS= libproj4.so:${PORTSDIR}/math/libproj4 +LIBPROJ4_LIB_DEPENDS= libproj4.so:math/libproj4 LIBPROJ4_CMAKE_ON= -DLIBPROJ4:BOOL=YES LIBPROJ4_CMAKE_OFF= -DLIBPROJ4:BOOL=NO -MPICH2_LIB_DEPENDS= libmpich.so.8:${PORTSDIR}/net/mpich2 +MPICH2_LIB_DEPENDS= libmpich.so.8:net/mpich2 MPICH2_CMAKE_ON= -DMPICH:BOOL=YES MPICH2_CMAKE_OFF= -DMPICH:BOOL=NO -NETCDF_LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf +NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf NETCDF_CMAKE_ON= -DNETCDF:BOOL=YES -DHDF:BOOL=NO NETCDF_CMAKE_OFF= -DNETCDF:BOOL=NO PYTHON_USES= python PYTHON_BUILD_DEPENDS= ${PYNUMPY} PYTHON_RUN_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib + ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib PYTHON_CMAKE_ON= -DPYTHON:BOOL=YES -DPYTHONVERSION:STRING="${PYTHON_VER}" PYTHON_CMAKE_OFF= -DPYTHON:BOOL=NO # math/qhull conflicts with math/plplot #QHULL_DESC= Enable Qhull support -#QHULL_LIB_DEPENDS= libqhull.so:${PORTSDIR}/math/qhull +#QHULL_LIB_DEPENDS= libqhull.so:math/qhull #QHULL_CMAKE_ON= -DQHULL:BOOL=YES #QHULL_CMAKE_OFF= -DQHULL:BOOL=NO -UDUNITS_LIB_DEPENDS= libudunits2.so:${PORTSDIR}/science/udunits +UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits UDUNITS_CMAKE_ON= -DUDUNITS:BOOL=YES UDUNITS_CMAKE_OFF= -DUDUNITS:BOOL=NO diff --git a/science/gramps/Makefile b/science/gramps/Makefile index 17afb15cfb48..2820811bc7f8 100644 --- a/science/gramps/Makefile +++ b/science/gramps/Makefile @@ -13,8 +13,8 @@ COMMENT= GTK/GNOME-based genealogy program LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}bsddb>0:${PORTSDIR}/databases/py-bsddb \ - ${PYTHON_PKGNAMEPREFIX}pyicu>=1.8:${PORTSDIR}/devel/py-pyicu +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}bsddb>0:databases/py-bsddb \ + ${PYTHON_PKGNAMEPREFIX}pyicu>=1.8:devel/py-pyicu NO_ARCH= yes USE_BDB= 5+ @@ -34,11 +34,11 @@ ENCHANT_DESC= Spellchecking support PYWEBKITGTK_DESC= Use webkit backend for Geographic view EXIV_DESC= Managing exiv metadata support -ENCHANT_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}enchant>=0:${PORTSDIR}/textproc/py-enchant -EXIV_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}exiv2>=0.1.3:${PORTSDIR}/graphics/py-exiv2 +ENCHANT_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}enchant>=0:textproc/py-enchant +EXIV_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}exiv2>=0.1.3:graphics/py-exiv2 GNOME_USE= GNOME=pygnome2,gnomedocutils -GRAPHVIZ_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pygraphviz>=0:${PORTSDIR}/graphics/py-pygraphviz -PYWEBKITGTK_RUN_DEPENDS=${PYTHON_PKGNAMEPREFIX}webkitgtk>=0:${PORTSDIR}/www/py-webkitgtk +GRAPHVIZ_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pygraphviz>=0:graphics/py-pygraphviz +PYWEBKITGTK_RUN_DEPENDS=${PYTHON_PKGNAMEPREFIX}webkitgtk>=0:www/py-webkitgtk pre-extract: @${ECHO_MSG} "==========================================================" diff --git a/science/grib_api/Makefile b/science/grib_api/Makefile index c374e8a2b30d..c34df1648845 100644 --- a/science/grib_api/Makefile +++ b/science/grib_api/Makefile @@ -12,8 +12,8 @@ COMMENT= ECMWF API for WMO FM-92 GRIB messages LICENSE= APACHE20 -LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf \ - libpng.so:${PORTSDIR}/graphics/png +LIB_DEPENDS= libnetcdf.so:science/netcdf \ + libpng.so:graphics/png OPTIONS_SINGLE= JPEG OPTIONS_SINGLE_JPEG= JASPER OPENJPEG @@ -30,9 +30,9 @@ USES= libtool pathfix PORTDATA= * JASPER_CONFIGURE_ON= --with-jasper=${LOCALBASE} -JASPER_LIB_DEPENDS= libjasper.so:${PORTSDIR}/graphics/jasper +JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper OPENJPEG_CONFIGURE_ON= --with-openjpeg=${LOCALBASE} -OPENJPEG_LIB_DEPENDS= libopenjpeg.so:${PORTSDIR}/graphics/openjpeg15 +OPENJPEG_LIB_DEPENDS= libopenjpeg.so:graphics/openjpeg15 post-install: ${INSTALL_SCRIPT} ${WRKSRC}/tools/grib1to2 ${STAGEDIR}${PREFIX}/bin/grib1to2 diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile index 0f483857edb5..389184966855 100644 --- a/science/gromacs/Makefile +++ b/science/gromacs/Makefile @@ -12,7 +12,7 @@ COMMENT= Compute molecular dynamics LICENSE= LGPL21 -BUILD_DEPENDS= boost-libs>=1.44:${PORTSDIR}/devel/boost-libs +BUILD_DEPENDS= boost-libs>=1.44:devel/boost-libs USES= cmake fortran perl5 pkgconfig shebangfix SHEBANG_FILES= admin/*.sh scripts/*.pl scripts/*.sh src/gromacs/selection/*.sh @@ -36,18 +36,18 @@ ATLAS_CMAKE_ON= -DBLAS_LIBRARIES:FILEPATH="${LOCALBASE}/lib/libcblas.so;${LOCAL ATLAS_CMAKE_OFF= -DBLAS_LIBRARIES:FILEPATH="${LOCALBASE}/lib/libblas.so" \ -DLAPACK_LIBRARIES:FILEPATH="${LOCALBASE}/lib/liblapack.so" FLOAT_DESC= Use single instead of double precision -FLOAT_BUILD_DEPENDS= fftw3>0:${PORTSDIR}/math/fftw3 -FLOAT_LIB_DEPENDS= libfftw3f.so:${PORTSDIR}/math/fftw3-float -FLOAT_LIB_DEPENDS_OFF= libfftw3.so:${PORTSDIR}/math/fftw3 +FLOAT_BUILD_DEPENDS= fftw3>0:math/fftw3 +FLOAT_LIB_DEPENDS= libfftw3f.so:math/fftw3-float +FLOAT_LIB_DEPENDS_OFF= libfftw3.so:math/fftw3 FLOAT_CMAKE_ON= -DGMX_DOUBLE:BOOL=OFF FLOAT_CMAKE_OFF= -DGMX_DOUBLE:BOOL=ON -MPICH2_LIB_DEPENDS= libmpich.so:${PORTSDIR}/net/mpich2 +MPICH2_LIB_DEPENDS= libmpich.so:net/mpich2 MPICH2_CMAKE_ON= -DMPI_C_COMPILER:FILEPATH="${LOCALBASE}/bin/mpicc" OPENMP_USES= compiler:openmp OPENMP_CMAKE_ON= -DGMX_CXX11:BOOL=OFF OPENMP_CMAKE_OFF= -DGMX_OPENMP:BOOL=OFF -OPENMPI_BUILD_DEPENDS= openmpi>0:${PORTSDIR}/net/openmpi -OPENMPI_RUN_DEPENDS= openmpi>0:${PORTSDIR}/net/openmpi +OPENMPI_BUILD_DEPENDS= openmpi>0:net/openmpi +OPENMPI_RUN_DEPENDS= openmpi>0:net/openmpi OPENMPI_CMAKE_ON= -DMPI_C_COMPILER:FILEPATH="${LOCALBASE}/mpi/openmpi/bin/mpicc" SIMD_CMAKE_OFF= -DGMX_SIMD:STRING="None" X11_USE= XORG=xext,x11 diff --git a/science/gwyddion/Makefile b/science/gwyddion/Makefile index 4fb9afeab6b4..89b480229f71 100644 --- a/science/gwyddion/Makefile +++ b/science/gwyddion/Makefile @@ -12,11 +12,11 @@ COMMENT= Gtk2 based SPM data visualization and analysis tool LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/COPYING -LIB_DEPENDS= libminizip.so:${PORTSDIR}/archivers/minizip \ - libcfitsio.so:${PORTSDIR}/astro/cfitsio \ - libIlmImf.so:${PORTSDIR}/graphics/OpenEXR \ - libfftw3.so:${PORTSDIR}/math/fftw3 \ - libgtkglext-x11-1.0.so:${PORTSDIR}/x11-toolkits/gtkglext +LIB_DEPENDS= libminizip.so:archivers/minizip \ + libcfitsio.so:astro/cfitsio \ + libIlmImf.so:graphics/OpenEXR \ + libfftw3.so:math/fftw3 \ + libgtkglext-x11-1.0.so:x11-toolkits/gtkglext USES= desktop-file-utils gettext gmake libtool pathfix pkgconfig \ shared-mime-info tar:xz @@ -48,7 +48,7 @@ PYTHON_CONFIGURE_WITH= gtksourceview python RUBY_USE= ruby=yes RUBY_CONFIGURE_WITH= ruby UNIQUE_DESC= Remote control backend support -UNIQUE_LIB_DEPENDS= libunique-1.0.so:${PORTSDIR}/x11-toolkits/unique +UNIQUE_LIB_DEPENDS= libunique-1.0.so:x11-toolkits/unique UNIQUE_CONFIGURE_WITH= unique post-patch: diff --git a/science/h5utils/Makefile b/science/h5utils/Makefile index 0e3d1a2ec968..0bc90da9019b 100644 --- a/science/h5utils/Makefile +++ b/science/h5utils/Makefile @@ -17,9 +17,9 @@ LICENSE_FILE= ${WRKSRC}/LICENSE GNU_CONFIGURE= YES CFLAGS += -L${LOCALBASE}/lib -I${LOCALBASE}/include -lpthread -BUILD_DEPENDS+= gawk:${PORTSDIR}/lang/gawk -LIB_DEPENDS+= libhdf5.so:${PORTSDIR}/science/hdf5 \ - libpng.so:${PORTSDIR}/graphics/png \ - libmatheval.so:${PORTSDIR}/devel/libmatheval +BUILD_DEPENDS+= gawk:lang/gawk +LIB_DEPENDS+= libhdf5.so:science/hdf5 \ + libpng.so:graphics/png \ + libmatheval.so:devel/libmatheval .include <bsd.port.mk> diff --git a/science/harminv/Makefile b/science/harminv/Makefile index 471190506679..1b25370b178f 100644 --- a/science/harminv/Makefile +++ b/science/harminv/Makefile @@ -19,6 +19,6 @@ LDFLAGS+= -L${LOCALBASE}/lib CONFIGURE_ENV+= LD_LIBRARY_PATH="${LD_LIBRARY_PATH}" USE_LDCONFIG= yes -LIB_DEPENDS+= libguile-2.0.so:${PORTSDIR}/lang/guile2 +LIB_DEPENDS+= libguile-2.0.so:lang/guile2 .include <bsd.port.mk> diff --git a/science/hdf/Makefile b/science/hdf/Makefile index 3e35575a61f2..a1c3b289089a 100644 --- a/science/hdf/Makefile +++ b/science/hdf/Makefile @@ -11,7 +11,7 @@ MASTER_SITES= http://www.hdfgroup.org/ftp/HDF/releases/HDF${PORTVERSION}/src/ \ MAINTAINER= ports@FreeBSD.org COMMENT= Hierarchical Data Format library (from NCSA) -LIB_DEPENDS= libsz.so:${PORTSDIR}/science/szip +LIB_DEPENDS= libsz.so:science/szip CONFLICTS_INSTALL= netcdf-4.[0-9]* diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile index a4a821b79534..d4ae97cb768f 100644 --- a/science/hdf5/Makefile +++ b/science/hdf5/Makefile @@ -48,7 +48,7 @@ FORTRAN_CONFIGURE_OFF= --disable-fortran --disable-fortran2003 FORTRAN_CONFIGURE_ON= --enable-fortran --enable-fortran2003 FORTRAN_USES= fortran SZIP_CONFIGURE_ON= --with-szlib=${LOCALBASE} -SZIP_LIB_DEPENDS= libsz.so:${PORTSDIR}/science/szip +SZIP_LIB_DEPENDS= libsz.so:science/szip post-patch: @${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags diff --git a/science/jstrack/Makefile b/science/jstrack/Makefile index eb5cf0b5096d..5d41826aa070 100644 --- a/science/jstrack/Makefile +++ b/science/jstrack/Makefile @@ -16,8 +16,8 @@ LICENSE_TEXT= It is and always will be free, and [Jim Graham] wrote it...\ so don't charge money for it, and don't claim that you wrote it LICENSE_PERMS= dist-sell pkg-sell auto-accept -LIB_DEPENDS= libnetpbm.so:${PORTSDIR}/graphics/netpbm -RUN_DEPENDS= dtplite:${PORTSDIR}/devel/tcllib +LIB_DEPENDS= libnetpbm.so:graphics/netpbm +RUN_DEPENDS= dtplite:devel/tcllib WRKSRC= ${WRKDIR}/${PORTNAME} USES= tk:85 diff --git a/science/kalzium/Makefile b/science/kalzium/Makefile index 311fceced680..2cfe427f8ef8 100644 --- a/science/kalzium/Makefile +++ b/science/kalzium/Makefile @@ -10,13 +10,13 @@ DIST_SUBDIR= KDE/${PORTVERSION} MAINTAINER= kde@FreeBSD.org COMMENT= Periodic table of elements for KDE 4 -LIB_DEPENDS= libopenbabel.so:${PORTSDIR}/science/openbabel \ - libavogadro.so:${PORTSDIR}/science/avogadro -BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/eigen2.pc:${PORTSDIR}/math/eigen2 \ - ${LOCALBASE}/libdata/pkgconfig/eigen3.pc:${PORTSDIR}/math/eigen3 \ - ${LOCALBASE}/lib/ocaml/facile/facile.a:${PORTSDIR}/math/facile \ - ${LOCALBASE}/libdata/pkgconfig/chemical-mime-data.pc:${PORTSDIR}/science/chemical-mime-data -RUN_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/chemical-mime-data.pc:${PORTSDIR}/science/chemical-mime-data +LIB_DEPENDS= libopenbabel.so:science/openbabel \ + libavogadro.so:science/avogadro +BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/eigen2.pc:math/eigen2 \ + ${LOCALBASE}/libdata/pkgconfig/eigen3.pc:math/eigen3 \ + ${LOCALBASE}/lib/ocaml/facile/facile.a:math/facile \ + ${LOCALBASE}/libdata/pkgconfig/chemical-mime-data.pc:science/chemical-mime-data +RUN_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/chemical-mime-data.pc:science/chemical-mime-data USE_KDE4= kdelibs kdeprefix automoc4 USES= cmake:outsource pkgconfig tar:xz diff --git a/science/kst2/Makefile b/science/kst2/Makefile index a345ee0acc64..b312252a28bb 100644 --- a/science/kst2/Makefile +++ b/science/kst2/Makefile @@ -10,7 +10,7 @@ DISTNAME= Kst-${DISTVERSION} MAINTAINER= makc@FreeBSD.org COMMENT= Data viewing and plotting tool -LIB_DEPENDS= libgsl.so:${PORTSDIR}/math/gsl +LIB_DEPENDS= libgsl.so:math/gsl USES= cmake:outsource pkgconfig _USE_QT4= gui xml designer svg linguisttools_build \ @@ -31,13 +31,13 @@ OPTIONS_DEFAULT= QT4 OPTIONS_SUB= yes FITS_DESC= Support for data in FITS format -FITS_LIB_DEPENDS= libcfitsio.so:${PORTSDIR}/astro/cfitsio +FITS_LIB_DEPENDS= libcfitsio.so:astro/cfitsio MATLAB_DESC= Support for data in MATLAB format -MATLAB_LIB_DEPENDS= libmatio.so:${PORTSDIR}/math/matio +MATLAB_LIB_DEPENDS= libmatio.so:math/matio NETCDF_DESC= Support for data in NetCDF format (broken) -NETCDF_LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf +NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf NETCDF_IGNORE= does not support NetCDF 4 TOOLKIT_DESC= Qt toolkit diff --git a/science/libctl/Makefile b/science/libctl/Makefile index 4ee7811b04d8..59fa41a8679f 100644 --- a/science/libctl/Makefile +++ b/science/libctl/Makefile @@ -11,7 +11,7 @@ COMMENT= Control Language Library LICENSE= GPLv2 -LIB_DEPENDS= libguile-2.0.so:${PORTSDIR}/lang/guile2 +LIB_DEPENDS= libguile-2.0.so:lang/guile2 GNU_CONFIGURE= yes CONFIGURE_ARGS= --enable-shared @@ -24,7 +24,7 @@ BROKEN_sparc64= does not build OPTIONS_DEFINE= NLOPT DOCS EXAMPLES NLOPT_DESC= Use NLopt, an external NonLinear OPTimizer -NLOPT_LIB_DEPENDS= libnlopt.so:${PORTSDIR}/math/nlopt +NLOPT_LIB_DEPENDS= libnlopt.so:math/nlopt post-install: @${MKDIR} ${STAGEDIR}${DOCSDIR} diff --git a/science/libghemical/Makefile b/science/libghemical/Makefile index 42209e291639..906c04597733 100644 --- a/science/libghemical/Makefile +++ b/science/libghemical/Makefile @@ -11,11 +11,11 @@ MASTER_SITES= http://bioinformatics.org/ghemical/download/release20111012/ \ MAINTAINER= ports@FreeBSD.org COMMENT= Support libraries of science/ghemical port -BUILD_DEPENDS= obabel:${PORTSDIR}/science/openbabel \ - intltool-update:${PORTSDIR}/textproc/intltool \ - ld:${PORTSDIR}/devel/binutils -LIB_DEPENDS= libmpqc.so:${PORTSDIR}/science/mpqc \ - libf2c.so:${PORTSDIR}/lang/f2c +BUILD_DEPENDS= obabel:science/openbabel \ + intltool-update:textproc/intltool \ + ld:devel/binutils +LIB_DEPENDS= libmpqc.so:science/mpqc \ + libf2c.so:lang/f2c USES= fortran gettext gmake pathfix pkgconfig libtool USE_GL= gl diff --git a/science/libkml/Makefile b/science/libkml/Makefile index a1345e3007a8..99d7226f4fd0 100644 --- a/science/libkml/Makefile +++ b/science/libkml/Makefile @@ -12,9 +12,9 @@ COMMENT= Library for parse, generate, and operate on KML LICENSE= BSD3CLAUSE -BUILD_DEPENDS= curl-config:${PORTSDIR}/ftp/curl \ - ${LOCALBASE}/include/expat.h:${PORTSDIR}/textproc/expat2 -LIB_DEPENDS= liburiparser.so:${PORTSDIR}/net/uriparser +BUILD_DEPENDS= curl-config:ftp/curl \ + ${LOCALBASE}/include/expat.h:textproc/expat2 +LIB_DEPENDS= liburiparser.so:net/uriparser OPTIONS_DEFINE= SWIG @@ -27,7 +27,7 @@ USES= autoreconf gmake libtool localbase GH_ACCOUNT= google USE_GITHUB= yes -SWIG_BUILD_DEPENDS= swig:${PORTSDIR}/devel/swig13 +SWIG_BUILD_DEPENDS= swig:devel/swig13 SWIG_CONFIGURE_OFF= --disable-swig post-patch: diff --git a/science/libxc/Makefile b/science/libxc/Makefile index 340ad73c0022..be1435b65170 100644 --- a/science/libxc/Makefile +++ b/science/libxc/Makefile @@ -26,7 +26,7 @@ post-patch: .include <bsd.port.pre.mk> .if ${OPSYS} == FreeBSD && ${OSVERSION} < 1000034 -LIB_DEPENDS+= libml.so:${PORTSDIR}/math/ldouble +LIB_DEPENDS+= libml.so:math/ldouble LDFLAGS+= -lml .endif diff --git a/science/massxpert/Makefile b/science/massxpert/Makefile index fc1363190702..cfba8e0c135b 100644 --- a/science/massxpert/Makefile +++ b/science/massxpert/Makefile @@ -12,12 +12,12 @@ COMMENT= massXpert software for (bio)chemists LICENSE= GPLv3 -LIB_DEPENDS= libpthread-stubs.so:${PORTSDIR}/devel/libpthread-stubs \ - libpcre.so:${PORTSDIR}/devel/pcre \ - libpng.so:${PORTSDIR}/graphics/png \ - libfreetype.so:${PORTSDIR}/print/freetype2 \ - libexpat.so:${PORTSDIR}/textproc/expat2 \ - libfontconfig.so:${PORTSDIR}/x11-fonts/fontconfig +LIB_DEPENDS= libpthread-stubs.so:devel/libpthread-stubs \ + libpcre.so:devel/pcre \ + libpng.so:graphics/png \ + libfreetype.so:print/freetype2 \ + libexpat.so:textproc/expat2 \ + libfontconfig.so:x11-fonts/fontconfig USE_GCC= any USES= cmake gettext tar:bzip2 diff --git a/science/mbdyn/Makefile b/science/mbdyn/Makefile index 0be44fdf1988..a58f475fe280 100644 --- a/science/mbdyn/Makefile +++ b/science/mbdyn/Makefile @@ -12,8 +12,8 @@ COMMENT= MultiBody Dynamics analysis system LICENSE= GPLv2 -LIB_DEPENDS= libarpack.so:${PORTSDIR}/math/arpack \ - libumfpack.so:${PORTSDIR}/math/suitesparse +LIB_DEPENDS= libarpack.so:math/arpack \ + libumfpack.so:math/suitesparse GNU_CONFIGURE= yes USES= fortran gmake libtool @@ -52,7 +52,7 @@ BROKEN= Does not compile on powerpc .endif .if ${PORT_OPTIONS:MMPI} -LIB_DEPENDS+= libmpich.so:${PORTSDIR}/net/mpich2 +LIB_DEPENDS+= libmpich.so:net/mpich2 CONFIGURE_ARGS+= --with-mpi=yes --enable-schur CPPFLAGS+= -I${LOCALBASE}/include . if ! ${PORT_OPTIONS:MMETIS} @@ -63,7 +63,7 @@ CONFIGURE_ARGS+= --with-mpi=no .endif .if ${PORT_OPTIONS:MMETIS} -LIB_DEPENDS+= libmetis.so:${PORTSDIR}/math/metis4 +LIB_DEPENDS+= libmetis.so:math/metis4 CONFIGURE_ARGS+= --with-metis=yes CPPFLAGS+= -I${LOCALBASE}/include/metis .else @@ -71,15 +71,15 @@ CONFIGURE_ARGS+= --with-metis=no .endif .if ${PORT_OPTIONS:MCHACO} -BUILD_DEPENDS+= ${LOCALBASE}/lib/libchaco.a:${PORTSDIR}/math/chaco +BUILD_DEPENDS+= ${LOCALBASE}/lib/libchaco.a:math/chaco CONFIGURE_ARGS+= --with-chaco=yes .else CONFIGURE_ARGS+= --with-chaco=no .endif .if ${PORT_OPTIONS:MGINAC} -LIB_DEPENDS+= libmetis.so:${PORTSDIR}/math/metis4 \ - libginac.so:${PORTSDIR}/math/GiNaC +LIB_DEPENDS+= libmetis.so:math/metis4 \ + libginac.so:math/GiNaC CONFIGURE_ARGS+= --with-ginac=yes CPPFLAGS+= -I${LOCALBASE}/include/metis .else @@ -88,7 +88,7 @@ CONFIGURE_ARGS+= --with-ginac=no .if ${PORT_OPTIONS:MTCL} IGNORE= you enabled Tcl-support, which is not implemented yet -LIB_DEPENDS+= libtcl84.so:${PORTSDIR}/lang/tcl84 +LIB_DEPENDS+= libtcl84.so:lang/tcl84 CONFIGURE_ARGS+= --with-tcl=yes CPPFLAGS+= -I${LOCALBASE}/include/tcl8.4 .else diff --git a/science/mcstas-comps/Makefile b/science/mcstas-comps/Makefile index 32156ec621f0..0373937f23c8 100644 --- a/science/mcstas-comps/Makefile +++ b/science/mcstas-comps/Makefile @@ -12,7 +12,7 @@ COMMENT= Component Library for the McStas neutron ray tracing package LICENSE= GPLv2 -RUN_DEPENDS= ${LOCALBASE}/mcstas/${PORTVERSION}/bin/mcstas:${PORTSDIR}/science/mcstas +RUN_DEPENDS= ${LOCALBASE}/mcstas/${PORTVERSION}/bin/mcstas:science/mcstas USES= cmake gmake # Apparently cmake does not generate an install/strip target if nothing diff --git a/science/medit/Makefile b/science/medit/Makefile index f2363ae3ec07..20cd3bf6da96 100644 --- a/science/medit/Makefile +++ b/science/medit/Makefile @@ -17,7 +17,7 @@ LICENSE_NAME= Special grant LICENSE_TEXT= Special grant from the author LICENSE_PERMS= dist-mirror pkg-mirror auto-accept -BUILD_DEPENDS= ${LOCALBASE}/include/cfortran.h:${PORTSDIR}/lang/cfortran +BUILD_DEPENDS= ${LOCALBASE}/include/cfortran.h:lang/cfortran USE_XORG= x11 xmu xext USE_GL= glut diff --git a/science/meep/Makefile b/science/meep/Makefile index e419b2f0ef2a..cf8d125db62d 100644 --- a/science/meep/Makefile +++ b/science/meep/Makefile @@ -10,13 +10,13 @@ MASTER_SITES= http://ab-initio.mit.edu/meep/ MAINTAINER= devel@stasyan.com COMMENT= FDTD simulation software to model electromagnetic systems -BUILD_DEPENDS= harminv:${PORTSDIR}/science/harminv \ - gsed:${PORTSDIR}/textproc/gsed -LIB_DEPENDS= libguile-2.0.so:${PORTSDIR}/lang/guile2 \ - libblas.so:${PORTSDIR}/math/blas \ - libctl.so:${PORTSDIR}/science/libctl \ - libhdf5.so:${PORTSDIR}/science/hdf5 -RUN_DEPENDS= harminv:${PORTSDIR}/science/harminv +BUILD_DEPENDS= harminv:science/harminv \ + gsed:textproc/gsed +LIB_DEPENDS= libguile-2.0.so:lang/guile2 \ + libblas.so:math/blas \ + libctl.so:science/libctl \ + libhdf5.so:science/hdf5 +RUN_DEPENDS= harminv:science/harminv GNU_CONFIGURE= yes USE_GCC= yes @@ -49,14 +49,14 @@ PLIST_SUB+= MPI="@comment " NOMPI="" .endif .if ${PORT_OPTIONS:MMPICH2} -LIB_DEPENDS+= libmpich.so.8:${PORTSDIR}/net/mpich2 +LIB_DEPENDS+= libmpich.so.8:net/mpich2 CONFIGURE_ENV+= MPICXX=${LOCALBASE}/bin/mpicc CFLAGS+= -I${LOCALBASE}/include .endif .if ${PORT_OPTIONS:MOPENMPI} -BUILD_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpiCC:${PORTSDIR}/net/openmpi -RUN_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpirun:${PORTSDIR}/net/openmpi +BUILD_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpiCC:net/openmpi +RUN_DEPENDS+= ${LOCALBASE}/mpi/openmpi/bin/mpirun:net/openmpi CONFIGURE_ENV+= MPICXX=${LOCALBASE}/mpi/openmpi/bin/mpiCC CFLAGS+= -I${LOCALBASE}/mpi/openmpi/include .endif diff --git a/science/mei/Makefile b/science/mei/Makefile index fbfe271b4c83..5916b5b3f5cc 100644 --- a/science/mei/Makefile +++ b/science/mei/Makefile @@ -12,8 +12,8 @@ COMMENT= Code_Saturne Mathematical Expression Interpreter LICENSE= LGPL21 -LIB_DEPENDS= libbft.so:${PORTSDIR}/science/bft -BUILD_DEPENDS= swig:${PORTSDIR}/devel/swig13 +LIB_DEPENDS= libbft.so:science/bft +BUILD_DEPENDS= swig:devel/swig13 USES= libtool python USE_LDCONFIG= yes diff --git a/science/minc2/Makefile b/science/minc2/Makefile index 8f2c01a34697..2e8445db4f0d 100644 --- a/science/minc2/Makefile +++ b/science/minc2/Makefile @@ -14,9 +14,9 @@ COMMENT= Medical Imaging NetCDF LICENSE= MIT -LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 \ - libnetcdf.so:${PORTSDIR}/science/netcdf -RUN_DEPENDS= bash:${PORTSDIR}/shells/bash +LIB_DEPENDS= libhdf5.so:science/hdf5 \ + libnetcdf.so:science/netcdf +RUN_DEPENDS= bash:shells/bash USE_GITHUB= yes GH_ACCOUNT= BIC-MNI diff --git a/science/mpb/Makefile b/science/mpb/Makefile index 00ff1d4f847d..7915b427030e 100644 --- a/science/mpb/Makefile +++ b/science/mpb/Makefile @@ -12,11 +12,11 @@ COMMENT= MIT Photonic-Bands LICENSE= GPLv2 -BUILD_DEPENDS= bash:${PORTSDIR}/shells/bash -LIB_DEPENDS= libfftw.so:${PORTSDIR}/math/fftw \ - libhdf5.so:${PORTSDIR}/science/hdf5 \ - libctl.so:${PORTSDIR}/science/libctl \ - libguile-2.0.so:${PORTSDIR}/lang/guile2 +BUILD_DEPENDS= bash:shells/bash +LIB_DEPENDS= libfftw.so:math/fftw \ + libhdf5.so:science/hdf5 \ + libctl.so:science/libctl \ + libguile-2.0.so:lang/guile2 OPTIONS_DEFINE= ATLAS NLOPT ATLAS_DESC= Use math/atlas instead of math/lapack @@ -29,16 +29,16 @@ MAKE_JOBS_UNSAFE= yes CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib -NLOPT_LIB_DEPENDS= libnlopt.so:${PORTSDIR}/math/nlopt +NLOPT_LIB_DEPENDS= libnlopt.so:math/nlopt .include <bsd.port.options.mk> .if ${PORT_OPTIONS:MATLAS} -LIB_DEPENDS+= libatlas.so:${PORTSDIR}/math/atlas +LIB_DEPENDS+= libatlas.so:math/atlas CONFIGURE_ARGS+= --with-lapack=-lalapack .else -LIB_DEPENDS+= libblas.so:${PORTSDIR}/math/blas \ - liblapack.so:${PORTSDIR}/math/lapack +LIB_DEPENDS+= libblas.so:math/blas \ + liblapack.so:math/lapack CONFIGURE_ARGS+= --with-lapack=-llapack .endif diff --git a/science/mpqc/Makefile b/science/mpqc/Makefile index 4ce686aab203..eafc621243ff 100644 --- a/science/mpqc/Makefile +++ b/science/mpqc/Makefile @@ -10,7 +10,7 @@ MASTER_SITES= SF MAINTAINER= ports@FreeBSD.org COMMENT= Massively Parallel Quantum Computing library and program -LIB_DEPENDS= libint.so:${PORTSDIR}/science/libint +LIB_DEPENDS= libint.so:science/libint GNU_CONFIGURE= yes USES= fortran gmake libtool perl5 shebangfix tar:bzip2 @@ -40,23 +40,23 @@ DOCS_DESC= Generate html docs and manpages (heavy dependencies) MPICH_DESC= Message-Passing Interface support OPTIFLAGS_DESC= Build with optimized flags -ICC_BUILD_DEPENDS= ${LOCALBASE}/intel_cc_80/bin/icc:${PORTSDIR}/lang/icc -MPICH_LIB_DEPENDS= libmpich.so:${PORTSDIR}/net/mpich2 -DOCS_BUILD_DEPENDS= doxygen:${PORTSDIR}/devel/doxygen \ - dot:${PORTSDIR}/graphics/graphviz \ - ${LOCALBASE}/bin/gsed:${PORTSDIR}/textproc/gsed +ICC_BUILD_DEPENDS= ${LOCALBASE}/intel_cc_80/bin/icc:lang/icc +MPICH_LIB_DEPENDS= libmpich.so:net/mpich2 +DOCS_BUILD_DEPENDS= doxygen:devel/doxygen \ + dot:graphics/graphviz \ + ${LOCALBASE}/bin/gsed:textproc/gsed DOCS_USES= execinfo DOCS_USE= TEX=latex:build .include <bsd.port.options.mk> .if ${PORT_OPTIONS:MATLAS} -LIB_DEPENDS+= libatlas.so:${PORTSDIR}/math/atlas +LIB_DEPENDS+= libatlas.so:math/atlas BLAS= -lf77blas LAPACK= -lalapack -lcblas .else -LIB_DEPENDS+= libblas.so:${PORTSDIR}/math/blas -LIB_DEPENDS+= liblapack.so:${PORTSDIR}/math/lapack +LIB_DEPENDS+= libblas.so:math/blas +LIB_DEPENDS+= liblapack.so:math/lapack BLAS= -lblas LAPACK= -llapack .endif diff --git a/science/ncs/Makefile b/science/ncs/Makefile index 1a41b513d2db..ae3839cd2612 100644 --- a/science/ncs/Makefile +++ b/science/ncs/Makefile @@ -11,15 +11,15 @@ COMMENT= Code_Saturne Kernel LICENSE= GPLv2 -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}qt4-core>=0:${PORTSDIR}/devel/py-qt4 \ - cs_preprocess:${PORTSDIR}/science/ecs \ - pyrcc4:${PORTSDIR}/textproc/py-qt4-xml -LIB_DEPENDS= libfvm.so:${PORTSDIR}/science/fvm \ - libmei.so:${PORTSDIR}/science/mei -RUN_DEPENDS= xmgrace:${PORTSDIR}/math/grace \ - bash:${PORTSDIR}/shells/bash \ - xterm:${PORTSDIR}/x11/xterm \ - cs_preprocess:${PORTSDIR}/science/ecs +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}qt4-core>=0:devel/py-qt4 \ + cs_preprocess:science/ecs \ + pyrcc4:textproc/py-qt4-xml +LIB_DEPENDS= libfvm.so:science/fvm \ + libmei.so:science/mei +RUN_DEPENDS= xmgrace:math/grace \ + bash:shells/bash \ + xterm:x11/xterm \ + cs_preprocess:science/ecs USES= fortran gettext gmake iconv libtool python shebangfix USE_GNOME= libxml2 @@ -41,7 +41,7 @@ FORTRANLIBDIR2= `${DIRNAME} \\`${FC} -print-libgcc-file-name\\``/../../../ OPTIONS_DEFINE= DOCS EXAMPLES BATCH BATCH_DESC= Use Torque to submit batches BATCH_CONFIGURE_WITH= batch=PBS -BATCH_LIB_DEPENDS= libtorque.so:${PORTSDIR}/sysutils/torque +BATCH_LIB_DEPENDS= libtorque.so:sysutils/torque OPTIONS_RADIO= BLAS OPTIONS_RADIO_BLAS= REFERENCE ATLAS @@ -75,30 +75,30 @@ BIN_DATAS= Makefile SaturneGUI autovalid.xml cs_profile lance lance.help \ .if defined(WITH_LAM) MPI_HOME= ${LOCALBASE} -BUILD_DEPENDS+= ${MPI_HOME}/lib/liblam.a:${PORTSDIR}/net/lam -RUN_DEPENDS+= ${MPI_HOME}/bin/lamboot:${PORTSDIR}/net/lam +BUILD_DEPENDS+= ${MPI_HOME}/lib/liblam.a:net/lam +RUN_DEPENDS+= ${MPI_HOME}/bin/lamboot:net/lam MPI_LIBS= -lmpi -llam .elif defined(WITH_OPENMPI) MPI_HOME= ${LOCALBASE}/mpi/openmpi -BUILD_DEPENDS+= ${MPI_HOME}/bin/mpicc:${PORTSDIR}/net/openmpi -RUN_DEPENDS+= ${MPI_HOME}/bin/mpirun:${PORTSDIR}/net/openmpi +BUILD_DEPENDS+= ${MPI_HOME}/bin/mpicc:net/openmpi +RUN_DEPENDS+= ${MPI_HOME}/bin/mpirun:net/openmpi MPI_LIBS= -lmpi -lorte -lopal .else MPI_HOME= ${LOCALBASE} -BUILD_DEPENDS+= ${MPI_HOME}/bin/mpicc:${PORTSDIR}/net/mpich2 -RUN_DEPENDS+= ${MPI_HOME}/bin/mpirun:${PORTSDIR}/net/mpich2 +BUILD_DEPENDS+= ${MPI_HOME}/bin/mpicc:net/mpich2 +RUN_DEPENDS+= ${MPI_HOME}/bin/mpirun:net/mpich2 MPI_LIBS= -lmpich -lmpl -lpthread .endif .if ${PORT_OPTIONS:MDOCS} USE_TEX= tex:build -BUILD_DEPENDS+= fig2dev:${PORTSDIR}/print/transfig +BUILD_DEPENDS+= fig2dev:print/transfig ALL_TARGET= all pdf INSTALL_TARGET= install install-pdf DOCS= AUTHORS COMPATIBILITY ChangeLog README .endif -RUN_DEPENDS+= xpdf:${PORTSDIR}/graphics/xpdf +RUN_DEPENDS+= xpdf:graphics/xpdf pre-everything:: @${ECHO_MSG} diff --git a/science/netcdf-cxx/Makefile b/science/netcdf-cxx/Makefile index 275c45395a73..14305ce7826f 100644 --- a/science/netcdf-cxx/Makefile +++ b/science/netcdf-cxx/Makefile @@ -10,7 +10,7 @@ CATEGORIES= science MAINTAINER= sunpoet@FreeBSD.org COMMENT= C++ library for machine-independent, array-oriented data access -LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf +LIB_DEPENDS= libnetcdf.so:science/netcdf CONFLICTS= netcdf-3.* netcdf-4.[0-2].* diff --git a/science/netcdf-fortran/Makefile b/science/netcdf-fortran/Makefile index e5f95e8fc5cc..6e404a49cff3 100644 --- a/science/netcdf-fortran/Makefile +++ b/science/netcdf-fortran/Makefile @@ -9,7 +9,7 @@ CATEGORIES= science MAINTAINER= sunpoet@FreeBSD.org COMMENT= Fortran library for machine-independent, array-oriented data access -LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf +LIB_DEPENDS= libnetcdf.so:science/netcdf CONFLICTS= netcdf-ftn-[0-9]* netcdf3-ftn-[0-9]* diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile index fc2f998fc2d1..befec72f8408 100644 --- a/science/netcdf/Makefile +++ b/science/netcdf/Makefile @@ -12,7 +12,7 @@ MASTER_SITES= http://www.unidata.ucar.edu/downloads/netcdf/ftp/ \ MAINTAINER= sunpoet@FreeBSD.org COMMENT= C library for machine-independent, array-oriented data access -LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 +LIB_DEPENDS= libhdf5.so:science/hdf5 CONFLICTS_INSTALL= hdf-4.[0-9]* netcdf-3.[0-9]* netcdf3-3.[0-9]* @@ -30,12 +30,12 @@ USE_LDCONFIG= yes USES= libtool localbase ncurses pathfix pkgconfig:run DAP_CONFIGURE_ENABLE= dap -DAP_LIB_DEPENDS= libcurl.so:${PORTSDIR}/ftp/curl -DOXYGEN_BUILD_DEPENDS= doxygen:${PORTSDIR}/devel/doxygen +DAP_LIB_DEPENDS= libcurl.so:ftp/curl +DOXYGEN_BUILD_DEPENDS= doxygen:devel/doxygen DOXYGEN_CONFIGURE_ENABLE= doxygen DOXYGEN_IMPLIES= DOCS DOXYGEN_PORTDOCS= * -SZIP_LIB_DEPENDS= libsz.so:${PORTSDIR}/science/szip +SZIP_LIB_DEPENDS= libsz.so:science/szip SZIP_LIBS= -lsz post-patch: diff --git a/science/openbabel/Makefile b/science/openbabel/Makefile index ee9320a46da4..81abb3110261 100644 --- a/science/openbabel/Makefile +++ b/science/openbabel/Makefile @@ -10,7 +10,7 @@ MASTER_SITES= SF MAINTAINER= makc@FreeBSD.org COMMENT= Chemistry file translation program -BUILD_DEPENDS= ${LOCALBASE}/include/eigen3/Eigen/Eigen:${PORTSDIR}/math/eigen3 +BUILD_DEPENDS= ${LOCALBASE}/include/eigen3/Eigen/Eigen:math/eigen3 CONFLICTS_INSTALL= babel-* @@ -26,7 +26,7 @@ OPTIONS_DEFAULT= PYTHON OPTIONS_SUB= yes CAIRO_DESC= PNG support via cairo library -CAIRO_LIB_DEPENDS= libcairo.so:${PORTSDIR}/graphics/cairo +CAIRO_LIB_DEPENDS= libcairo.so:graphics/cairo CAIRO_USES= pkgconfig PYTHON_USES= python diff --git a/science/orthanc-dicomweb/Makefile b/science/orthanc-dicomweb/Makefile index 2d5ac1d56fa7..8b38b4f4b257 100644 --- a/science/orthanc-dicomweb/Makefile +++ b/science/orthanc-dicomweb/Makefile @@ -14,18 +14,18 @@ COMMENT= WADO and DICOMweb support for Orthanc LICENSE= AGPLv3 LICENSE_FILE= ${WRKSRC}/COPYING -BUILD_DEPENDS= ${LOCALBASE}/include/orthanc/OrthancCPlugin.h:${PORTSDIR}/science/orthanc \ - gtest-config:${PORTSDIR}/devel/googletest -LIB_DEPENDS= libgdcmCommon.so:${PORTSDIR}/devel/gdcm \ - libboost_filesystem.so:${PORTSDIR}/devel/boost-libs \ - libboost_thread.so:${PORTSDIR}/devel/boost-libs \ - libboost_system.so:${PORTSDIR}/devel/boost-libs \ - libboost_date_time.so:${PORTSDIR}/devel/boost-libs \ - libboost_regex.so:${PORTSDIR}/devel/boost-libs \ - libboost_locale.so:${PORTSDIR}/devel/boost-libs \ - libjsoncpp.so:${PORTSDIR}/devel/jsoncpp \ - libuuid.so:${PORTSDIR}/misc/e2fsprogs-libuuid \ - libpugixml.so:${PORTSDIR}/textproc/pugixml +BUILD_DEPENDS= ${LOCALBASE}/include/orthanc/OrthancCPlugin.h:science/orthanc \ + gtest-config:devel/googletest +LIB_DEPENDS= libgdcmCommon.so:devel/gdcm \ + libboost_filesystem.so:devel/boost-libs \ + libboost_thread.so:devel/boost-libs \ + libboost_system.so:devel/boost-libs \ + libboost_date_time.so:devel/boost-libs \ + libboost_regex.so:devel/boost-libs \ + libboost_locale.so:devel/boost-libs \ + libjsoncpp.so:devel/jsoncpp \ + libuuid.so:misc/e2fsprogs-libuuid \ + libpugixml.so:textproc/pugixml CXXFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib diff --git a/science/orthanc-postgresql/Makefile b/science/orthanc-postgresql/Makefile index 1b6fb6de09af..6a736bc10f72 100644 --- a/science/orthanc-postgresql/Makefile +++ b/science/orthanc-postgresql/Makefile @@ -14,9 +14,9 @@ COMMENT= PostgreSQL plugin for Orthanc LICENSE= AGPLv3 LICENSE_FILE= ${WRKSRC}/COPYING -BUILD_DEPENDS= orthanc>=0.9.4:${PORTSDIR}/science/orthanc -LIB_DEPENDS= libboost_system.so:${PORTSDIR}/devel/boost-libs \ - libjsoncpp.so:${PORTSDIR}/devel/jsoncpp +BUILD_DEPENDS= orthanc>=0.9.4:science/orthanc +LIB_DEPENDS= libboost_system.so:devel/boost-libs \ + libjsoncpp.so:devel/jsoncpp ## UnitTests require running PostgreSQL server, so it's pointless to build/run them CMAKE_ARGS= -DBUILD_UNIT_TESTS=OFF diff --git a/science/orthanc-webviewer/Makefile b/science/orthanc-webviewer/Makefile index 4fdc75610ef8..27d7be8c8e97 100644 --- a/science/orthanc-webviewer/Makefile +++ b/science/orthanc-webviewer/Makefile @@ -20,15 +20,15 @@ COMMENT= Web viewer plugin for Orthanc LICENSE= AGPLv3 LICENSE_FILE= ${WRKSRC}/COPYING -BUILD_DEPENDS= ${LOCALBASE}/include/orthanc/OrthancCPlugin.h:${PORTSDIR}/science/orthanc \ - gtest-config:${PORTSDIR}/devel/googletest -LIB_DEPENDS= libgdcmCommon.so:${PORTSDIR}/devel/gdcm \ - libboost_system.so:${PORTSDIR}/devel/boost-libs \ - libboost_thread.so:${PORTSDIR}/devel/boost-libs \ - libboost_filesystem.so:${PORTSDIR}/devel/boost-libs \ - libjsoncpp.so:${PORTSDIR}/devel/jsoncpp \ - libsqlite3.so:${PORTSDIR}/databases/sqlite3 \ - libuuid.so:${PORTSDIR}/misc/e2fsprogs-libuuid +BUILD_DEPENDS= ${LOCALBASE}/include/orthanc/OrthancCPlugin.h:science/orthanc \ + gtest-config:devel/googletest +LIB_DEPENDS= libgdcmCommon.so:devel/gdcm \ + libboost_system.so:devel/boost-libs \ + libboost_thread.so:devel/boost-libs \ + libboost_filesystem.so:devel/boost-libs \ + libjsoncpp.so:devel/jsoncpp \ + libsqlite3.so:databases/sqlite3 \ + libuuid.so:misc/e2fsprogs-libuuid CXXFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib diff --git a/science/orthanc/Makefile b/science/orthanc/Makefile index bba0052e6e9a..3675ee246f42 100644 --- a/science/orthanc/Makefile +++ b/science/orthanc/Makefile @@ -17,21 +17,21 @@ COMMENT= RESTful DICOM server for healthcare and medical research LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING -BUILD_DEPENDS= gtest-config:${PORTSDIR}/devel/googletest -LIB_DEPENDS= libcurl.so:${PORTSDIR}/ftp/curl \ - libjsoncpp.so:${PORTSDIR}/devel/jsoncpp \ - libuuid.so:${PORTSDIR}/misc/e2fsprogs-libuuid \ - libboost_filesystem.so:${PORTSDIR}/devel/boost-libs \ - libboost_thread.so:${PORTSDIR}/devel/boost-libs \ - libboost_system.so:${PORTSDIR}/devel/boost-libs \ - libboost_date_time.so:${PORTSDIR}/devel/boost-libs \ - libboost_regex.so:${PORTSDIR}/devel/boost-libs \ - libboost_locale.so:${PORTSDIR}/devel/boost-libs \ - libdcmdsig.so:${PORTSDIR}/devel/dcmtk \ - libcharls.so:${PORTSDIR}/devel/dcmtk \ - libdcmjpls.so:${PORTSDIR}/devel/dcmtk \ - libsqlite3.so:${PORTSDIR}/databases/sqlite3 \ - libpugixml.so:${PORTSDIR}/textproc/pugixml +BUILD_DEPENDS= gtest-config:devel/googletest +LIB_DEPENDS= libcurl.so:ftp/curl \ + libjsoncpp.so:devel/jsoncpp \ + libuuid.so:misc/e2fsprogs-libuuid \ + libboost_filesystem.so:devel/boost-libs \ + libboost_thread.so:devel/boost-libs \ + libboost_system.so:devel/boost-libs \ + libboost_date_time.so:devel/boost-libs \ + libboost_regex.so:devel/boost-libs \ + libboost_locale.so:devel/boost-libs \ + libdcmdsig.so:devel/dcmtk \ + libcharls.so:devel/dcmtk \ + libdcmjpls.so:devel/dcmtk \ + libsqlite3.so:databases/sqlite3 \ + libpugixml.so:textproc/pugixml CMAKE_ARGS= -DDCMTK_LIBRARIES="dcmdsig;charls;dcmjpls" \ -DDCMTK_DIR="${LOCALBASE}" \ diff --git a/science/p5-Algorithm-SVMLight/Makefile b/science/p5-Algorithm-SVMLight/Makefile index 2e0f52f0d1f0..2643413f4090 100644 --- a/science/p5-Algorithm-SVMLight/Makefile +++ b/science/p5-Algorithm-SVMLight/Makefile @@ -11,8 +11,8 @@ PKGNAMEPREFIX= p5- MAINTAINER= perl@FreeBSD.org COMMENT= Perl interface to SVMLight Machine-Learning Package -BUILD_DEPENDS= svmlight>=6.01_2:${PORTSDIR}/science/svmlight -LIB_DEPENDS= libsvmlight.so:${PORTSDIR}/science/svmlight +BUILD_DEPENDS= svmlight>=6.01_2:science/svmlight +LIB_DEPENDS= libsvmlight.so:science/svmlight USES= perl5 USE_PERL5= modbuild diff --git a/science/p5-Chemistry-3DBuilder/Makefile b/science/p5-Chemistry-3DBuilder/Makefile index 3641f22f740f..46d9d5511c49 100644 --- a/science/p5-Chemistry-3DBuilder/Makefile +++ b/science/p5-Chemistry-3DBuilder/Makefile @@ -12,18 +12,18 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Generate 3D coordinates from a connection table -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES \ - p5-Chemistry-File-SMARTS>=0:${PORTSDIR}/science/p5-Chemistry-File-SMARTS \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring \ - p5-Chemistry-InternalCoords>=0:${PORTSDIR}/science/p5-Chemistry-InternalCoords \ - p5-Math-VectorReal>=0:${PORTSDIR}/math/p5-Math-VectorReal -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES \ - p5-Chemistry-File-SMARTS>=0:${PORTSDIR}/science/p5-Chemistry-File-SMARTS \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring \ - p5-Chemistry-InternalCoords>=0:${PORTSDIR}/science/p5-Chemistry-InternalCoords \ - p5-Math-VectorReal>=0:${PORTSDIR}/math/p5-Math-VectorReal +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-File-SMILES>=0:science/p5-Chemistry-File-SMILES \ + p5-Chemistry-File-SMARTS>=0:science/p5-Chemistry-File-SMARTS \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring \ + p5-Chemistry-InternalCoords>=0:science/p5-Chemistry-InternalCoords \ + p5-Math-VectorReal>=0:math/p5-Math-VectorReal +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-File-SMILES>=0:science/p5-Chemistry-File-SMILES \ + p5-Chemistry-File-SMARTS>=0:science/p5-Chemistry-File-SMARTS \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring \ + p5-Chemistry-InternalCoords>=0:science/p5-Chemistry-InternalCoords \ + p5-Math-VectorReal>=0:math/p5-Math-VectorReal USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-Bond-Find/Makefile b/science/p5-Chemistry-Bond-Find/Makefile index 370e2f666400..e9b77a028a56 100644 --- a/science/p5-Chemistry-Bond-Find/Makefile +++ b/science/p5-Chemistry-Bond-Find/Makefile @@ -12,8 +12,8 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Detect bonds in a molecule and assign formal bond orders -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-Canonicalize/Makefile b/science/p5-Chemistry-Canonicalize/Makefile index 71b627b087f6..deba784b022a 100644 --- a/science/p5-Chemistry-Canonicalize/Makefile +++ b/science/p5-Chemistry-Canonicalize/Makefile @@ -12,8 +12,8 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Number the atoms in a molecule in a unique way -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-File-MDLMol/Makefile b/science/p5-Chemistry-File-MDLMol/Makefile index 3593e153e4f5..83fe6e8ec9de 100644 --- a/science/p5-Chemistry-File-MDLMol/Makefile +++ b/science/p5-Chemistry-File-MDLMol/Makefile @@ -12,10 +12,10 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= MDL molfile reader/write -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-File-Mopac/Makefile b/science/p5-Chemistry-File-Mopac/Makefile index dd4fb03ea6e7..f3b589cd1cbf 100644 --- a/science/p5-Chemistry-File-Mopac/Makefile +++ b/science/p5-Chemistry-File-Mopac/Makefile @@ -12,10 +12,10 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= MOPAC 6 input file reader/writer -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-InternalCoords>=0:${PORTSDIR}/science/p5-Chemistry-InternalCoords -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-InternalCoords>=0:${PORTSDIR}/science/p5-Chemistry-InternalCoords +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-InternalCoords>=0:science/p5-Chemistry-InternalCoords +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-InternalCoords>=0:science/p5-Chemistry-InternalCoords USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-File-PDB/Makefile b/science/p5-Chemistry-File-PDB/Makefile index d68b6ce9b6ff..6f9629d8d4d6 100644 --- a/science/p5-Chemistry-File-PDB/Makefile +++ b/science/p5-Chemistry-File-PDB/Makefile @@ -11,8 +11,8 @@ PKGNAMEPREFIX= p5- MAINTAINER= perl@FreeBSD.org COMMENT= Perl module to read and write PDB files -BUILD_DEPENDS= p5-Chemistry-Mol>=0.37:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-MacroMol>=0.06:${PORTSDIR}/science/p5-Chemistry-MacroMol +BUILD_DEPENDS= p5-Chemistry-Mol>=0.37:science/p5-Chemistry-Mol \ + p5-Chemistry-MacroMol>=0.06:science/p5-Chemistry-MacroMol RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5 diff --git a/science/p5-Chemistry-File-SLN/Makefile b/science/p5-Chemistry-File-SLN/Makefile index dfc5b9a7ade1..01d704e9724a 100644 --- a/science/p5-Chemistry-File-SLN/Makefile +++ b/science/p5-Chemistry-File-SLN/Makefile @@ -12,16 +12,16 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= SLN linear notation parser/writer -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring \ - p5-Chemistry-Canonicalize>=0:${PORTSDIR}/science/p5-Chemistry-Canonicalize \ - p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \ - p5-Parse-Yapp>=0:${PORTSDIR}/devel/p5-Parse-Yapp -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring \ - p5-Chemistry-Canonicalize>=0:${PORTSDIR}/science/p5-Chemistry-Canonicalize \ - p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \ - p5-Parse-Yapp>=0:${PORTSDIR}/devel/p5-Parse-Yapp +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring \ + p5-Chemistry-Canonicalize>=0:science/p5-Chemistry-Canonicalize \ + p5-Chemistry-Bond-Find>=0:science/p5-Chemistry-Bond-Find \ + p5-Parse-Yapp>=0:devel/p5-Parse-Yapp +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring \ + p5-Chemistry-Canonicalize>=0:science/p5-Chemistry-Canonicalize \ + p5-Chemistry-Bond-Find>=0:science/p5-Chemistry-Bond-Find \ + p5-Parse-Yapp>=0:devel/p5-Parse-Yapp USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-File-SMARTS/Makefile b/science/p5-Chemistry-File-SMARTS/Makefile index 0c2b4c6f4efd..559d62ca16b1 100644 --- a/science/p5-Chemistry-File-SMARTS/Makefile +++ b/science/p5-Chemistry-File-SMARTS/Makefile @@ -12,14 +12,14 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= SMARTS chemical substructure pattern linear notation parser -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern \ - p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern \ - p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern \ + p5-Chemistry-File-SMILES>=0:science/p5-Chemistry-File-SMILES +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern \ + p5-Chemistry-File-SMILES>=0:science/p5-Chemistry-File-SMILES USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-File-SMILES/Makefile b/science/p5-Chemistry-File-SMILES/Makefile index ce502ee6fbee..69333a9ed939 100644 --- a/science/p5-Chemistry-File-SMILES/Makefile +++ b/science/p5-Chemistry-File-SMILES/Makefile @@ -12,14 +12,14 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= SMILES linear notation parser/writer -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \ - p5-Chemistry-Canonicalize>=0:${PORTSDIR}/science/p5-Chemistry-Canonicalize \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \ - p5-Chemistry-Canonicalize>=0:${PORTSDIR}/science/p5-Chemistry-Canonicalize \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Bond-Find>=0:science/p5-Chemistry-Bond-Find \ + p5-Chemistry-Canonicalize>=0:science/p5-Chemistry-Canonicalize \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Bond-Find>=0:science/p5-Chemistry-Bond-Find \ + p5-Chemistry-Canonicalize>=0:science/p5-Chemistry-Canonicalize \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring USES= perl5 shebangfix SHEBANG_FILES= write.pl diff --git a/science/p5-Chemistry-File-VRML/Makefile b/science/p5-Chemistry-File-VRML/Makefile index ebbea0770a22..4b3ec3c93a20 100644 --- a/science/p5-Chemistry-File-VRML/Makefile +++ b/science/p5-Chemistry-File-VRML/Makefile @@ -12,8 +12,8 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Generate VRML models for molecules -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-File-XYZ/Makefile b/science/p5-Chemistry-File-XYZ/Makefile index ba4642f5acec..5f25a80fba4a 100644 --- a/science/p5-Chemistry-File-XYZ/Makefile +++ b/science/p5-Chemistry-File-XYZ/Makefile @@ -12,8 +12,8 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= XYZ molecule format reader/writer -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-FormulaPattern/Makefile b/science/p5-Chemistry-FormulaPattern/Makefile index 828f6fba9fcb..3e967dd8b8e0 100644 --- a/science/p5-Chemistry-FormulaPattern/Makefile +++ b/science/p5-Chemistry-FormulaPattern/Makefile @@ -12,10 +12,10 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Match molecule by formula -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-InternalCoords/Makefile b/science/p5-Chemistry-InternalCoords/Makefile index bfa405943e05..00ee4e0cb0e9 100644 --- a/science/p5-Chemistry-InternalCoords/Makefile +++ b/science/p5-Chemistry-InternalCoords/Makefile @@ -12,12 +12,12 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Represent the position of an atom using internal coordinates -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \ - p5-Chemistry-Canonicalize>=0:${PORTSDIR}/science/p5-Chemistry-Canonicalize -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \ - p5-Chemistry-Canonicalize>=0:${PORTSDIR}/science/p5-Chemistry-Canonicalize +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Bond-Find>=0:science/p5-Chemistry-Bond-Find \ + p5-Chemistry-Canonicalize>=0:science/p5-Chemistry-Canonicalize +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-Bond-Find>=0:science/p5-Chemistry-Bond-Find \ + p5-Chemistry-Canonicalize>=0:science/p5-Chemistry-Canonicalize USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-MacroMol/Makefile b/science/p5-Chemistry-MacroMol/Makefile index 0c488e246f6c..993e1a290e16 100644 --- a/science/p5-Chemistry-MacroMol/Makefile +++ b/science/p5-Chemistry-MacroMol/Makefile @@ -11,7 +11,7 @@ PKGNAMEPREFIX= p5- MAINTAINER= perl@FreeBSD.org COMMENT= Perl toolkit to describe macromolecules -BUILD_DEPENDS= p5-Chemistry-Mol>=0.37:${PORTSDIR}/science/p5-Chemistry-Mol +BUILD_DEPENDS= p5-Chemistry-Mol>=0.37:science/p5-Chemistry-Mol RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5 diff --git a/science/p5-Chemistry-MidasPattern/Makefile b/science/p5-Chemistry-MidasPattern/Makefile index 67e4d9ad08e1..e9e3b2de3b41 100644 --- a/science/p5-Chemistry-MidasPattern/Makefile +++ b/science/p5-Chemistry-MidasPattern/Makefile @@ -12,14 +12,14 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Select atoms in macromolecules -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-File-PDB>=0:${PORTSDIR}/science/p5-Chemistry-File-PDB \ - p5-Chemistry-MacroMol>=0:${PORTSDIR}/science/p5-Chemistry-MacroMol \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-File-PDB>=0:${PORTSDIR}/science/p5-Chemistry-File-PDB \ - p5-Chemistry-MacroMol>=0:${PORTSDIR}/science/p5-Chemistry-MacroMol \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-File-PDB>=0:science/p5-Chemistry-File-PDB \ + p5-Chemistry-MacroMol>=0:science/p5-Chemistry-MacroMol \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-File-PDB>=0:science/p5-Chemistry-File-PDB \ + p5-Chemistry-MacroMol>=0:science/p5-Chemistry-MacroMol \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-Mok/Makefile b/science/p5-Chemistry-Mok/Makefile index 8e66b9e2aa01..00f6962779ec 100644 --- a/science/p5-Chemistry-Mok/Makefile +++ b/science/p5-Chemistry-Mok/Makefile @@ -12,14 +12,14 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Molecular awk interpreter -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES \ - p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES \ - p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-File-SMILES>=0:science/p5-Chemistry-File-SMILES \ + p5-Chemistry-Bond-Find>=0:science/p5-Chemistry-Bond-Find \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-File-SMILES>=0:science/p5-Chemistry-File-SMILES \ + p5-Chemistry-Bond-Find>=0:science/p5-Chemistry-Bond-Find \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-Mol/Makefile b/science/p5-Chemistry-Mol/Makefile index b8d1b13ffa39..b9afe93aeead 100644 --- a/science/p5-Chemistry-Mol/Makefile +++ b/science/p5-Chemistry-Mol/Makefile @@ -11,7 +11,7 @@ PKGNAMEPREFIX= p5- MAINTAINER= perl@FreeBSD.org COMMENT= Perl toolkit to describe molecules -BUILD_DEPENDS= p5-Math-VectorReal>=1.02:${PORTSDIR}/math/p5-Math-VectorReal +BUILD_DEPENDS= p5-Math-VectorReal>=1.02:math/p5-Math-VectorReal RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5 diff --git a/science/p5-Chemistry-Pattern/Makefile b/science/p5-Chemistry-Pattern/Makefile index 3ecd055f5f3c..623e012ef980 100644 --- a/science/p5-Chemistry-Pattern/Makefile +++ b/science/p5-Chemistry-Pattern/Makefile @@ -12,8 +12,8 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Chemical substructure pattern matching -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-Reaction/Makefile b/science/p5-Chemistry-Reaction/Makefile index 2e28b7e84003..df9c56bc1a99 100644 --- a/science/p5-Chemistry-Reaction/Makefile +++ b/science/p5-Chemistry-Reaction/Makefile @@ -12,14 +12,14 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Represent a ring as a substructure of a molecule -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES \ - p5-Statistics-Regression>=0:${PORTSDIR}/math/p5-Statistics-Regression \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES \ - p5-Statistics-Regression>=0:${PORTSDIR}/math/p5-Statistics-Regression \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-File-SMILES>=0:science/p5-Chemistry-File-SMILES \ + p5-Statistics-Regression>=0:math/p5-Statistics-Regression \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-File-SMILES>=0:science/p5-Chemistry-File-SMILES \ + p5-Statistics-Regression>=0:math/p5-Statistics-Regression \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern USES= perl5 USE_PERL5= configure diff --git a/science/p5-Chemistry-Ring/Makefile b/science/p5-Chemistry-Ring/Makefile index 917ad9a5aa1a..73b28821afa3 100644 --- a/science/p5-Chemistry-Ring/Makefile +++ b/science/p5-Chemistry-Ring/Makefile @@ -12,10 +12,10 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Represent a ring as a substructure of a molecule -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Statistics-Regression>=0:${PORTSDIR}/math/p5-Statistics-Regression -RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Statistics-Regression>=0:${PORTSDIR}/math/p5-Statistics-Regression +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Statistics-Regression>=0:math/p5-Statistics-Regression +RUN_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Statistics-Regression>=0:math/p5-Statistics-Regression USES= perl5 USE_PERL5= configure diff --git a/science/p5-Geo-Coordinates-Converter-iArea/Makefile b/science/p5-Geo-Coordinates-Converter-iArea/Makefile index 248e713dfc01..4a8281a0a2b8 100644 --- a/science/p5-Geo-Coordinates-Converter-iArea/Makefile +++ b/science/p5-Geo-Coordinates-Converter-iArea/Makefile @@ -14,9 +14,9 @@ COMMENT= Some utility functions around iArea LICENSE= ART10 GPLv1 LICENSE_COMB= dual -BUILD_DEPENDS= p5-CDB_File>=0.96:${PORTSDIR}/databases/p5-CDB_File \ - p5-File-ShareDir>=1.02:${PORTSDIR}/devel/p5-File-ShareDir \ - p5-Geo-Coordinates-Converter>=0.09:${PORTSDIR}/science/p5-Geo-Coordinates-Converter +BUILD_DEPENDS= p5-CDB_File>=0.96:databases/p5-CDB_File \ + p5-File-ShareDir>=1.02:devel/p5-File-ShareDir \ + p5-Geo-Coordinates-Converter>=0.09:science/p5-Geo-Coordinates-Converter RUN_DEPENDS:= ${BUILD_DEPENDS} NO_ARCH= yes diff --git a/science/p5-Geo-Coordinates-Converter/Makefile b/science/p5-Geo-Coordinates-Converter/Makefile index 1e626acee792..19159e95651c 100644 --- a/science/p5-Geo-Coordinates-Converter/Makefile +++ b/science/p5-Geo-Coordinates-Converter/Makefile @@ -14,11 +14,11 @@ COMMENT= Simple converter of geo coordinates LICENSE= ART10 GPLv1 LICENSE_COMB= dual -BUILD_DEPENDS= p5-Class-Accessor-Lite>=0.05:${PORTSDIR}/devel/p5-Class-Accessor-Lite \ - p5-String-CamelCase>0:${PORTSDIR}/textproc/p5-String-CamelCase \ - p5-YAML>0:${PORTSDIR}/textproc/p5-YAML +BUILD_DEPENDS= p5-Class-Accessor-Lite>=0.05:devel/p5-Class-Accessor-Lite \ + p5-String-CamelCase>0:textproc/p5-String-CamelCase \ + p5-YAML>0:textproc/p5-YAML RUN_DEPENDS:= ${BUILD_DEPENDS} -TEST_DEPENDS= p5-Test-Base>0:${PORTSDIR}/devel/p5-Test-Base +TEST_DEPENDS= p5-Test-Base>0:devel/p5-Test-Base USES= perl5 USE_PERL5= configure diff --git a/science/p5-Geo-WebService-Elevation-USGS/Makefile b/science/p5-Geo-WebService-Elevation-USGS/Makefile index a11aa201834c..1bff46ca808f 100644 --- a/science/p5-Geo-WebService-Elevation-USGS/Makefile +++ b/science/p5-Geo-WebService-Elevation-USGS/Makefile @@ -14,9 +14,9 @@ COMMENT= Perl extension for elevation queries against USGS web services LICENSE= ART10 GPLv1 LICENSE_COMB= dual -BUILD_DEPENDS= p5-HTTP-Message>=0:${PORTSDIR}/www/p5-HTTP-Message \ - p5-JSON>=0:${PORTSDIR}/converters/p5-JSON \ - p5-libwww>=0:${PORTSDIR}/www/p5-libwww +BUILD_DEPENDS= p5-HTTP-Message>=0:www/p5-HTTP-Message \ + p5-JSON>=0:converters/p5-JSON \ + p5-libwww>=0:www/p5-libwww RUN_DEPENDS:= ${BUILD_DEPENDS} PORTSCOUT= limit:^[0-9\.]*$$ diff --git a/science/p5-Mcstas-Tools/Makefile b/science/p5-Mcstas-Tools/Makefile index ddcb561ea0ac..a1be901bf0e2 100644 --- a/science/p5-Mcstas-Tools/Makefile +++ b/science/p5-Mcstas-Tools/Makefile @@ -13,10 +13,10 @@ COMMENT= Perl based tools for the McStas neutron ray tracing package LICENSE= GPLv2 -RUN_DEPENDS= p5-Tk>0:${PORTSDIR}/x11-toolkits/p5-Tk \ - p5-PGPLOT>=2.21:${PORTSDIR}/graphics/p5-PGPLOT \ - PDL>0:${PORTSDIR}/math/PDL \ - ${LOCALBASE}/bin/mcstas:${PORTSDIR}/science/mcstas +RUN_DEPENDS= p5-Tk>0:x11-toolkits/p5-Tk \ + p5-PGPLOT>=2.21:graphics/p5-PGPLOT \ + PDL>0:math/PDL \ + ${LOCALBASE}/bin/mcstas:science/mcstas USES= cmake gmake perl5 CMAKE_ARGS= -Denable_mcstas=1 diff --git a/science/p5-PerlMol/Makefile b/science/p5-PerlMol/Makefile index bd6d96b664c5..cab9c47dd60b 100644 --- a/science/p5-PerlMol/Makefile +++ b/science/p5-PerlMol/Makefile @@ -12,52 +12,52 @@ PKGNAMEPREFIX= p5- MAINTAINER= swills@FreeBSD.org COMMENT= Perl modules for molecular chemistry -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-MacroMol>=0:${PORTSDIR}/science/p5-Chemistry-MacroMol \ - p5-Parse-Yapp>=0:${PORTSDIR}/devel/p5-Parse-Yapp \ - p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES \ - p5-Chemistry-File-SMARTS>=0:${PORTSDIR}/science/p5-Chemistry-File-SMARTS \ - p5-Chemistry-InternalCoords>=0:${PORTSDIR}/science/p5-Chemistry-InternalCoords \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring \ - p5-Chemistry-Isotope>=0:${PORTSDIR}/science/p5-Chemistry-Isotope \ - p5-Chemistry-3DBuilder>=0:${PORTSDIR}/science/p5-Chemistry-3DBuilder \ - p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \ - p5-Chemistry-Canonicalize>=0:${PORTSDIR}/science/p5-Chemistry-Canonicalize \ - p5-Chemistry-File-PDB>=0:${PORTSDIR}/science/p5-Chemistry-File-PDB \ - p5-Chemistry-File-XYZ>=0:${PORTSDIR}/science/p5-Chemistry-File-XYZ \ - p5-Chemistry-File-VRML>=0:${PORTSDIR}/science/p5-Chemistry-File-VRML \ - p5-Chemistry-File-SLN>=0:${PORTSDIR}/science/p5-Chemistry-File-SLN \ - p5-Chemistry-File-Mopac>=0:${PORTSDIR}/science/p5-Chemistry-File-Mopac \ - p5-Chemistry-File-MDLMol>=0:${PORTSDIR}/science/p5-Chemistry-File-MDLMol \ - p5-Chemistry-Reaction>=0:${PORTSDIR}/science/p5-Chemistry-Reaction \ - p5-Chemistry-FormulaPattern>=0:${PORTSDIR}/science/p5-Chemistry-FormulaPattern \ - p5-Chemistry-MidasPattern>=0:${PORTSDIR}/science/p5-Chemistry-MidasPattern \ - p5-Chemistry-Mok>=0:${PORTSDIR}/science/p5-Chemistry-Mok \ - p5-Statistics-Regression>=0:${PORTSDIR}/math/p5-Statistics-Regression -BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \ - p5-Chemistry-MacroMol>=0:${PORTSDIR}/science/p5-Chemistry-MacroMol \ - p5-Parse-Yapp>=0:${PORTSDIR}/devel/p5-Parse-Yapp \ - p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES \ - p5-Chemistry-File-SMARTS>=0:${PORTSDIR}/science/p5-Chemistry-File-SMARTS \ - p5-Chemistry-InternalCoords>=0:${PORTSDIR}/science/p5-Chemistry-InternalCoords \ - p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern \ - p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring \ - p5-Chemistry-Isotope>=0:${PORTSDIR}/science/p5-Chemistry-Isotope \ - p5-Chemistry-3DBuilder>=0:${PORTSDIR}/science/p5-Chemistry-3DBuilder \ - p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \ - p5-Chemistry-Canonicalize>=0:${PORTSDIR}/science/p5-Chemistry-Canonicalize \ - p5-Chemistry-File-PDB>=0:${PORTSDIR}/science/p5-Chemistry-File-PDB \ - p5-Chemistry-File-XYZ>=0:${PORTSDIR}/science/p5-Chemistry-File-XYZ \ - p5-Chemistry-File-VRML>=0:${PORTSDIR}/science/p5-Chemistry-File-VRML \ - p5-Chemistry-File-SLN>=0:${PORTSDIR}/science/p5-Chemistry-File-SLN \ - p5-Chemistry-File-Mopac>=0:${PORTSDIR}/science/p5-Chemistry-File-Mopac \ - p5-Chemistry-File-MDLMol>=0:${PORTSDIR}/science/p5-Chemistry-File-MDLMol \ - p5-Chemistry-Reaction>=0:${PORTSDIR}/science/p5-Chemistry-Reaction \ - p5-Chemistry-FormulaPattern>=0:${PORTSDIR}/science/p5-Chemistry-FormulaPattern \ - p5-Chemistry-MidasPattern>=0:${PORTSDIR}/science/p5-Chemistry-MidasPattern \ - p5-Chemistry-Mok>=0:${PORTSDIR}/science/p5-Chemistry-Mok \ - p5-Statistics-Regression>=0:${PORTSDIR}/math/p5-Statistics-Regression +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-MacroMol>=0:science/p5-Chemistry-MacroMol \ + p5-Parse-Yapp>=0:devel/p5-Parse-Yapp \ + p5-Chemistry-File-SMILES>=0:science/p5-Chemistry-File-SMILES \ + p5-Chemistry-File-SMARTS>=0:science/p5-Chemistry-File-SMARTS \ + p5-Chemistry-InternalCoords>=0:science/p5-Chemistry-InternalCoords \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring \ + p5-Chemistry-Isotope>=0:science/p5-Chemistry-Isotope \ + p5-Chemistry-3DBuilder>=0:science/p5-Chemistry-3DBuilder \ + p5-Chemistry-Bond-Find>=0:science/p5-Chemistry-Bond-Find \ + p5-Chemistry-Canonicalize>=0:science/p5-Chemistry-Canonicalize \ + p5-Chemistry-File-PDB>=0:science/p5-Chemistry-File-PDB \ + p5-Chemistry-File-XYZ>=0:science/p5-Chemistry-File-XYZ \ + p5-Chemistry-File-VRML>=0:science/p5-Chemistry-File-VRML \ + p5-Chemistry-File-SLN>=0:science/p5-Chemistry-File-SLN \ + p5-Chemistry-File-Mopac>=0:science/p5-Chemistry-File-Mopac \ + p5-Chemistry-File-MDLMol>=0:science/p5-Chemistry-File-MDLMol \ + p5-Chemistry-Reaction>=0:science/p5-Chemistry-Reaction \ + p5-Chemistry-FormulaPattern>=0:science/p5-Chemistry-FormulaPattern \ + p5-Chemistry-MidasPattern>=0:science/p5-Chemistry-MidasPattern \ + p5-Chemistry-Mok>=0:science/p5-Chemistry-Mok \ + p5-Statistics-Regression>=0:math/p5-Statistics-Regression +BUILD_DEPENDS= p5-Chemistry-Mol>=0:science/p5-Chemistry-Mol \ + p5-Chemistry-MacroMol>=0:science/p5-Chemistry-MacroMol \ + p5-Parse-Yapp>=0:devel/p5-Parse-Yapp \ + p5-Chemistry-File-SMILES>=0:science/p5-Chemistry-File-SMILES \ + p5-Chemistry-File-SMARTS>=0:science/p5-Chemistry-File-SMARTS \ + p5-Chemistry-InternalCoords>=0:science/p5-Chemistry-InternalCoords \ + p5-Chemistry-Pattern>=0:science/p5-Chemistry-Pattern \ + p5-Chemistry-Ring>=0:science/p5-Chemistry-Ring \ + p5-Chemistry-Isotope>=0:science/p5-Chemistry-Isotope \ + p5-Chemistry-3DBuilder>=0:science/p5-Chemistry-3DBuilder \ + p5-Chemistry-Bond-Find>=0:science/p5-Chemistry-Bond-Find \ + p5-Chemistry-Canonicalize>=0:science/p5-Chemistry-Canonicalize \ + p5-Chemistry-File-PDB>=0:science/p5-Chemistry-File-PDB \ + p5-Chemistry-File-XYZ>=0:science/p5-Chemistry-File-XYZ \ + p5-Chemistry-File-VRML>=0:science/p5-Chemistry-File-VRML \ + p5-Chemistry-File-SLN>=0:science/p5-Chemistry-File-SLN \ + p5-Chemistry-File-Mopac>=0:science/p5-Chemistry-File-Mopac \ + p5-Chemistry-File-MDLMol>=0:science/p5-Chemistry-File-MDLMol \ + p5-Chemistry-Reaction>=0:science/p5-Chemistry-Reaction \ + p5-Chemistry-FormulaPattern>=0:science/p5-Chemistry-FormulaPattern \ + p5-Chemistry-MidasPattern>=0:science/p5-Chemistry-MidasPattern \ + p5-Chemistry-Mok>=0:science/p5-Chemistry-Mok \ + p5-Statistics-Regression>=0:math/p5-Statistics-Regression USES= perl5 USE_PERL5= configure diff --git a/science/paraview/Makefile b/science/paraview/Makefile index 2ed717afe55c..bdbdb984b254 100644 --- a/science/paraview/Makefile +++ b/science/paraview/Makefile @@ -16,20 +16,20 @@ LICENSE_NAME= ParaView_License LICENSE_FILE= ${PATCH_WRKSRC}/License_v1.2.txt LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept -BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/matplotlib/pyplot.py:${PORTSDIR}/math/py-matplotlib -LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 \ - libpng.so:${PORTSDIR}/graphics/png \ - libtiff.so:${PORTSDIR}/graphics/tiff \ - libfreetype.so:${PORTSDIR}/print/freetype2 \ - libexpat.so:${PORTSDIR}/textproc/expat2 \ - libjbig.so:${PORTSDIR}/graphics/jbigkit \ - liborc-0.4.so:${PORTSDIR}/devel/orc \ - libpcre.so:${PORTSDIR}/devel/pcre \ - libffi.so:${PORTSDIR}/devel/libffi \ - libdrm.so:${PORTSDIR}/graphics/libdrm \ - libfontconfig.so:${PORTSDIR}/x11-fonts/fontconfig -RUN_DEPENDS= bash:${PORTSDIR}/shells/bash \ - ${PYTHON_SITELIBDIR}/matplotlib/pyplot.py:${PORTSDIR}/math/py-matplotlib +BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/matplotlib/pyplot.py:math/py-matplotlib +LIB_DEPENDS= libhdf5.so:science/hdf5 \ + libpng.so:graphics/png \ + libtiff.so:graphics/tiff \ + libfreetype.so:print/freetype2 \ + libexpat.so:textproc/expat2 \ + libjbig.so:graphics/jbigkit \ + liborc-0.4.so:devel/orc \ + libpcre.so:devel/pcre \ + libffi.so:devel/libffi \ + libdrm.so:graphics/libdrm \ + libfontconfig.so:x11-fonts/fontconfig +RUN_DEPENDS= bash:shells/bash \ + ${PYTHON_SITELIBDIR}/matplotlib/pyplot.py:math/py-matplotlib CONFLICTS_BUILD= protobuf* @@ -86,14 +86,14 @@ WRKSRC= ${WRKDIR}/ParaView-v${PORTVERSION}-source .include <bsd.port.options.mk> .if ${PORT_OPTIONS:MOSMESA} -LIB_DEPENDS+= libOSMesa32.so:${PORTSDIR}/graphics/libosmesa +LIB_DEPENDS+= libOSMesa32.so:graphics/libosmesa CMAKE_ARGS+= -DVTK_OPENGL_HAS_OSMESA:BOOL=ON \ -DOSMESA_INCLUDE_DIR:PATH=${LOCALBASE}/include/Mesa \ -DOSMESA_LIBRARY:FILEPATH=${LOCALBASE}/lib/libOSMesa32.so .endif .if ${PORT_OPTIONS:MGL2PS} -LIB_DEPENDS+= libgl2ps.so:${PORTSDIR}/print/gl2ps +LIB_DEPENDS+= libgl2ps.so:print/gl2ps CMAKE_ARGS+= -DVTK_USE_GL2PS:BOOL=ON PLIST_SUB+= GL2PS="" .else diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile index 871c09ead4e5..f8decdabf9cc 100644 --- a/science/pnetcdf/Makefile +++ b/science/pnetcdf/Makefile @@ -28,9 +28,9 @@ USES= fortran gmake perl5 tar:bzip2 PORTDOCS= COPYRIGHT INSTALL README MPICH2_CONFIGURE_ON= --with-mpi=${LOCALBASE} -MPICH2_LIB_DEPENDS= libmpich.so:${PORTSDIR}/net/mpich2 +MPICH2_LIB_DEPENDS= libmpich.so:net/mpich2 OPENMPI_CONFIGURE_ON= --with-mpi=${LOCALBASE}/mpi/openmpi -OPENMPI_LIB_DEPENDS= libmpi.so:${PORTSDIR}/net/openmpi +OPENMPI_LIB_DEPENDS= libmpi.so:net/openmpi post-patch: @${FIND} ${WRKSRC} -name Makefile.in | ${XARGS} ${REINPLACE_CMD} -e '/$$(INSTALL.*$$(...DIR)/ s|$$(...DIR)|$$(DESTDIR)&|' diff --git a/science/psychopy/Makefile b/science/psychopy/Makefile index a1ba131e10e2..de333cd1a5ae 100644 --- a/science/psychopy/Makefile +++ b/science/psychopy/Makefile @@ -10,13 +10,13 @@ COMMENT= Psychophysics toolkit for Python LICENSE= GPLv3+ -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>0:${PORTSDIR}/devel/py-lxml \ - ${PYTHON_PKGNAMEPREFIX}pillow>0:${PORTSDIR}/graphics/py-pillow \ - ${PYTHON_PKGNAMEPREFIX}matplotlib>=0.90.1:${PORTSDIR}/math/py-matplotlib \ - ${PYTHON_PKGNAMEPREFIX}pandas>0:${PORTSDIR}/math/py-pandas \ - ${PYTHON_PKGNAMEPREFIX}scipy>=0.6.0:${PORTSDIR}/science/py-scipy \ - ${PYTHON_PKGNAMEPREFIX}openpyxl>0:${PORTSDIR}/textproc/py-openpyxl \ - dejavu>0:${PORTSDIR}/x11-fonts/dejavu \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml \ + ${PYTHON_PKGNAMEPREFIX}pillow>0:graphics/py-pillow \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=0.90.1:math/py-matplotlib \ + ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas \ + ${PYTHON_PKGNAMEPREFIX}scipy>=0.6.0:science/py-scipy \ + ${PYTHON_PKGNAMEPREFIX}openpyxl>0:textproc/py-openpyxl \ + dejavu>0:x11-fonts/dejavu \ ${PYGAME} \ ${PYNUMPY} @@ -42,7 +42,7 @@ OPTIONS_DEFINE_i386= PYGLET OPTIONS_DEFAULT_i386= PYGLET PYGLET_DESC= Drawing support via Pyglet -PYGLET_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyglet>=1.1.2:${PORTSDIR}/graphics/py-pyglet +PYGLET_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyglet>=1.1.2:graphics/py-pyglet .include <bsd.port.options.mk> diff --git a/science/pulseview/Makefile b/science/pulseview/Makefile index 579eb15f74a4..51c8e19bd678 100644 --- a/science/pulseview/Makefile +++ b/science/pulseview/Makefile @@ -13,9 +13,9 @@ COMMENT= GUI client that supports various hardware logic analyzers LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING -LIB_DEPENDS= libboost_thread.so:${PORTSDIR}/devel/boost-libs \ - libsigrok.so:${PORTSDIR}/devel/libsigrok \ - libsigrokdecode.so:${PORTSDIR}/devel/libsigrokdecode +LIB_DEPENDS= libboost_thread.so:devel/boost-libs \ + libsigrok.so:devel/libsigrok \ + libsigrokdecode.so:devel/libsigrokdecode USES= cmake gmake pkgconfig USE_QT4= corelib gui moc_build qmake_build rcc_build uic_build diff --git a/science/py-cdo/Makefile b/science/py-cdo/Makefile index 94dfecb749a2..17faf14cee47 100644 --- a/science/py-cdo/Makefile +++ b/science/py-cdo/Makefile @@ -12,7 +12,7 @@ COMMENT= Python binding to CDO (Climate Data Operators) LICENSE= GPLv2 -RUN_DEPENDS= cdo:${PORTSDIR}/science/cdo +RUN_DEPENDS= cdo:science/cdo NO_ARCH= yes USE_PYTHON= autoplist concurrent distutils diff --git a/science/py-h5py/Makefile b/science/py-h5py/Makefile index 7c30a053e09e..f4d8c225545e 100644 --- a/science/py-h5py/Makefile +++ b/science/py-h5py/Makefile @@ -13,12 +13,12 @@ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/licenses/license.txt BUILD_DEPENDS= ${PYNUMPY} \ - cython:${PORTSDIR}/lang/cython \ - ${PYTHON_PKGNAMEPREFIX}six>0:${PORTSDIR}/devel/py-six \ - ${PYTHON_PKGNAMEPREFIX}pkgconfig>0:${PORTSDIR}/devel/py-pkgconfig -LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 + cython:lang/cython \ + ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six \ + ${PYTHON_PKGNAMEPREFIX}pkgconfig>0:devel/py-pkgconfig +LIB_DEPENDS= libhdf5.so:science/hdf5 RUN_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}six>0:${PORTSDIR}/devel/py-six + ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six USE_GITHUB= yes diff --git a/science/py-hcluster/Makefile b/science/py-hcluster/Makefile index 9f6e11574f79..0a0021bf11d9 100644 --- a/science/py-hcluster/Makefile +++ b/science/py-hcluster/Makefile @@ -15,7 +15,7 @@ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib + ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib RUN_DEPENDS:= ${BUILD_DEPENDS} USES= python diff --git a/science/py-mdp/Makefile b/science/py-mdp/Makefile index 2662c64a36a3..0e307980617f 100644 --- a/science/py-mdp/Makefile +++ b/science/py-mdp/Makefile @@ -25,9 +25,9 @@ LIBSVM_DESC= Provide the LibSVMClassifier node PP_DESC= Provide the Parallel Python PPScheduler SCIPY_DESC= Instal SciPy versions of eigensolver, FFT and convolution -LIBSVM_RUN_DEPENDS= libsvm>2.91:${PORTSDIR}/science/libsvm \ - libsvm-python>2.91:${PORTSDIR}/science/libsvm-python -PP_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pp>0:${PORTSDIR}/devel/py-pp -SCIPY_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scipy>=0.5.2:${PORTSDIR}/science/py-scipy +LIBSVM_RUN_DEPENDS= libsvm>2.91:science/libsvm \ + libsvm-python>2.91:science/libsvm-python +PP_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pp>0:devel/py-pp +SCIPY_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scipy>=0.5.2:science/py-scipy .include <bsd.port.mk> diff --git a/science/py-mlpy/Makefile b/science/py-mlpy/Makefile index 3743998c6181..dc362ead1933 100644 --- a/science/py-mlpy/Makefile +++ b/science/py-mlpy/Makefile @@ -14,9 +14,9 @@ COMMENT= High performance Python package for predictive modeling LICENSE= GPLv3 BUILD_DEPENDS= ${PYNUMPY} \ - cython>0:${PORTSDIR}/lang/cython + cython>0:lang/cython RUN_DEPENDS:= ${BUILD_DEPENDS} -LIB_DEPENDS= libgsl.so:${PORTSDIR}/math/gsl +LIB_DEPENDS= libgsl.so:math/gsl USE_LDCONFIG= yes CFLAGS+= -I${LOCALBASE}/include -I${PYTHON_SITELIBDIR}/numpy/core diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile index 4923cdec5c94..3ed46c92f7d7 100644 --- a/science/py-netCDF4/Makefile +++ b/science/py-netCDF4/Makefile @@ -15,8 +15,8 @@ COMMENT= Python Interface to the NetCDF Library (versions 3 and 4) LICENSE= MIT BUILD_DEPENDS= ${PYNUMPY} -LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 \ - libnetcdf.so:${PORTSDIR}/science/netcdf +LIB_DEPENDS= libhdf5.so:science/hdf5 \ + libnetcdf.so:science/netcdf RUN_DEPENDS:= ${BUILD_DEPENDS} OPTIONS_DEFINE= DOCS EXAMPLES diff --git a/science/py-obspy/Makefile b/science/py-obspy/Makefile index 0a8bc37c1703..c5ba0ee3f929 100644 --- a/science/py-obspy/Makefile +++ b/science/py-obspy/Makefile @@ -13,14 +13,14 @@ COMMENT= Python framework for seismological observatories LICENSE= LGPL3 BUILD_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}scipy>=0.9.0:${PORTSDIR}/science/py-scipy \ - ${PYTHON_PKGNAMEPREFIX}future>=0.12.4:${PORTSDIR}/devel/py-future \ - ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1.0:${PORTSDIR}/math/py-matplotlib \ - ${PYTHON_PKGNAMEPREFIX}lxml>=2.2:${PORTSDIR}/devel/py-lxml \ - ${PYTHON_PKGNAMEPREFIX}suds>=0.4.0:${PORTSDIR}/net/py-suds \ - ${PYTHON_PKGNAMEPREFIX}requests>=0:${PORTSDIR}/www/py-requests \ - ${PYTHON_PKGNAMEPREFIX}decorator>=0:${PORTSDIR}/devel/py-decorator \ - ${PYTHON_PKGNAMEPREFIX}sqlalchemy>=0:${PORTSDIR}/databases/py-sqlalchemy + ${PYTHON_PKGNAMEPREFIX}scipy>=0.9.0:science/py-scipy \ + ${PYTHON_PKGNAMEPREFIX}future>=0.12.4:devel/py-future \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1.0:math/py-matplotlib \ + ${PYTHON_PKGNAMEPREFIX}lxml>=2.2:devel/py-lxml \ + ${PYTHON_PKGNAMEPREFIX}suds>=0.4.0:net/py-suds \ + ${PYTHON_PKGNAMEPREFIX}requests>=0:www/py-requests \ + ${PYTHON_PKGNAMEPREFIX}decorator>=0:devel/py-decorator \ + ${PYTHON_PKGNAMEPREFIX}sqlalchemy>=0:databases/py-sqlalchemy RUN_DEPENDS:= ${BUILD_DEPENDS} USES= fortran python shebangfix zip diff --git a/science/py-paida/Makefile b/science/py-paida/Makefile index 6dd2fbc9b1fb..e2e081b0452e 100644 --- a/science/py-paida/Makefile +++ b/science/py-paida/Makefile @@ -9,7 +9,7 @@ MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}-3.2.1_2.10.1 PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME}-3.2.1_2.10.1 -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}tkinter>0:${PORTSDIR}/x11-toolkits/py-tkinter +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}tkinter>0:x11-toolkits/py-tkinter MAINTAINER= ports@FreeBSD.org COMMENT= Pure Python scientific analysis package diff --git a/science/py-pydap/Makefile b/science/py-pydap/Makefile index fea548cbd334..19972e5210b8 100644 --- a/science/py-pydap/Makefile +++ b/science/py-pydap/Makefile @@ -18,13 +18,13 @@ BROKEN= does not build DEPRECATED= Broken for more than 6 months EXPIRATION_DATE= 2016-04-15 -BUILD_DEPENDS= paver:${PORTSDIR}/devel/py-paver \ +BUILD_DEPENDS= paver:devel/py-paver \ ${PYNUMPY} -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}httplib2>0:${PORTSDIR}/www/py-httplib2 \ - ${PYTHON_PKGNAMEPREFIX}Genshi>0:${PORTSDIR}/textproc/py-genshi \ - ${PYTHON_PKGNAMEPREFIX}Paste>0:${PORTSDIR}/www/py-paste \ - ${PYTHON_PKGNAMEPREFIX}PasteDeploy>0:${PORTSDIR}/www/py-pastedeploy \ - ${PYTHON_PKGNAMEPREFIX}PasteScript>0:${PORTSDIR}/www/py-pastescript \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}httplib2>0:www/py-httplib2 \ + ${PYTHON_PKGNAMEPREFIX}Genshi>0:textproc/py-genshi \ + ${PYTHON_PKGNAMEPREFIX}Paste>0:www/py-paste \ + ${PYTHON_PKGNAMEPREFIX}PasteDeploy>0:www/py-pastedeploy \ + ${PYTHON_PKGNAMEPREFIX}PasteScript>0:www/py-pastescript \ ${PYNUMPY} OPTIONS_DEFINE= DOCS @@ -37,9 +37,9 @@ PORTDOCS= * .buildinfo .include <bsd.port.options.mk> .if ${PORT_OPTIONS:MDOCS} -BUILD_DEPENDS+= sphinx-build:${PORTSDIR}/textproc/py-sphinx \ - ${PYTHON_PKGNAMEPREFIX}coards>0:${PORTSDIR}/science/py-coards \ - ${PYTHON_PKGNAMEPREFIX}pygments>0:${PORTSDIR}/textproc/py-pygments +BUILD_DEPENDS+= sphinx-build:textproc/py-sphinx \ + ${PYTHON_PKGNAMEPREFIX}coards>0:science/py-coards \ + ${PYTHON_PKGNAMEPREFIX}pygments>0:textproc/py-pygments PYDISTUTILS_BUILD_TARGET+= build_sphinx diff --git a/science/py-pysal/Makefile b/science/py-pysal/Makefile index 934fe44200f7..16d68cb33b4b 100644 --- a/science/py-pysal/Makefile +++ b/science/py-pysal/Makefile @@ -14,10 +14,10 @@ COMMENT= Cross-platform library of spatial analysis functions LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.3:${PORTSDIR}/math/py-numpy \ - ${PYTHON_PKGNAMEPREFIX}scipy>=0.7:${PORTSDIR}/science/py-scipy +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.3:math/py-numpy \ + ${PYTHON_PKGNAMEPREFIX}scipy>=0.7:science/py-scipy RUN_DEPENDS:= ${BUILD_DEPENDS} -TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nose>=0:${PORTSDIR}/devel/py-nose +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nose>=0:devel/py-nose NO_ARCH= yes USE_PYTHON= autoplist concurrent distutils diff --git a/science/py-pyteomics/Makefile b/science/py-pyteomics/Makefile index f48b9b45ce08..a5b5c7e2c6cb 100644 --- a/science/py-pyteomics/Makefile +++ b/science/py-pyteomics/Makefile @@ -10,8 +10,8 @@ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= makc@FreeBSD.org COMMENT= Python modules for proteomics data analysis -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>=0:${PORTSDIR}/devel/py-lxml \ - ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:${PORTSDIR}/math/py-matplotlib \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>=0:devel/py-lxml \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:math/py-matplotlib \ ${PYNUMPY} USES= python diff --git a/science/py-scikit-fuzzy/Makefile b/science/py-scikit-fuzzy/Makefile index 315a4f77802f..0007c1b7e584 100644 --- a/science/py-scikit-fuzzy/Makefile +++ b/science/py-scikit-fuzzy/Makefile @@ -13,7 +13,7 @@ COMMENT= Fuzzy logic toolkit for SciPy LICENSE= BSD2CLAUSE RUN_DEPENDS= ${PYNUMPY} \ - ${PYTHON_SITELIBDIR}/scipy/version.py:${PORTSDIR}/science/py-scipy + ${PYTHON_SITELIBDIR}/scipy/version.py:science/py-scipy BUILD_DEPENDS= ${RUN_DEPENDS} USES= python diff --git a/science/py-scikit-learn/Makefile b/science/py-scikit-learn/Makefile index d96039990748..5164cbb33b7a 100644 --- a/science/py-scikit-learn/Makefile +++ b/science/py-scikit-learn/Makefile @@ -11,7 +11,7 @@ MAINTAINER= demon@FreeBSD.org COMMENT= Machine learning algorithms for python BUILD_DEPENDS= ${PYNUMPY} \ - ${PYTHON_SITELIBDIR}/scipy/version.py:${PORTSDIR}/science/py-scipy + ${PYTHON_SITELIBDIR}/scipy/version.py:science/py-scipy RUN_DEPENDS:= ${BUILD_DEPENDS} USES= fortran python diff --git a/science/py-scikit-sparse/Makefile b/science/py-scikit-sparse/Makefile index 0bc869bd9a7d..e8b04465ac22 100644 --- a/science/py-scikit-sparse/Makefile +++ b/science/py-scikit-sparse/Makefile @@ -15,10 +15,10 @@ COMMENT= Sparse matrix package LICENSE= BSD2CLAUSE RUN_DEPENDS= ${PYNUMPY} \ - ${PYTHON_SITELIBDIR}/scipy/version.py:${PORTSDIR}/science/py-scipy + ${PYTHON_SITELIBDIR}/scipy/version.py:science/py-scipy BUILD_DEPENDS= ${RUN_DEPENDS} \ - cython>0:${PORTSDIR}/lang/cython -LIB_DEPENDS= libumfpack.so:${PORTSDIR}/math/suitesparse + cython>0:lang/cython +LIB_DEPENDS= libumfpack.so:math/suitesparse USES= fortran python USE_PYTHON= autoplist distutils diff --git a/science/py-scimath/Makefile b/science/py-scimath/Makefile index 27985dee99c0..41b84e61ff4f 100644 --- a/science/py-scimath/Makefile +++ b/science/py-scimath/Makefile @@ -14,8 +14,8 @@ COMMENT= Scientific and Mathematical calculations LICENSE= BSD3CLAUSE LGPL3 LICENSE_COMB= dual -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}traits>=3.6.0:${PORTSDIR}/devel/py-traits \ - ${PYTHON_PKGNAMEPREFIX}numpy>=0:${PORTSDIR}/math/py-numpy +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}traits>=3.6.0:devel/py-traits \ + ${PYTHON_PKGNAMEPREFIX}numpy>=0:math/py-numpy RUN_DEPENDS:= ${BUILD_DEPENDS} USES= python diff --git a/science/py-scipy/Makefile b/science/py-scipy/Makefile index 3f2613a39068..92de96863ee9 100644 --- a/science/py-scipy/Makefile +++ b/science/py-scipy/Makefile @@ -20,7 +20,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= ${PYNUMPY} RUN_DEPENDS= ${PYNUMPY} \ - swig:${PORTSDIR}/devel/swig13 + swig:devel/swig13 USES= fortran python USE_PYTHON= autoplist concurrent distutils diff --git a/science/pybrain/Makefile b/science/pybrain/Makefile index c3760a173217..db29fb0c58df 100644 --- a/science/pybrain/Makefile +++ b/science/pybrain/Makefile @@ -10,7 +10,7 @@ COMMENT= PyBrain is the swiss army knife for neural networking LICENSE= BSD3CLAUSE -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scipy>=0.7.1:${PORTSDIR}/science/py-scipy +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scipy>=0.7.1:science/py-scipy USE_GITHUB= yes diff --git a/science/pycdf/Makefile b/science/pycdf/Makefile index f3f842962a96..dc05f010468e 100644 --- a/science/pycdf/Makefile +++ b/science/pycdf/Makefile @@ -11,7 +11,7 @@ DISTNAME= ${PORTNAME}-0.6-3b MAINTAINER= ports@FreeBSD.org COMMENT= Python Interface to the Unidata NetCDF Library -LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf +LIB_DEPENDS= libnetcdf.so:science/netcdf BUILD_DEPENDS= ${PYNUMPY} RUN_DEPENDS:= ${BUILD_DEPENDS} diff --git a/science/qcl/Makefile b/science/qcl/Makefile index 2e55b55212c7..a3016df539cf 100644 --- a/science/qcl/Makefile +++ b/science/qcl/Makefile @@ -19,7 +19,7 @@ PORTDATA= * OPTIONS_DEFINE= PLOTUTILS PLOTUTILS_DESC= Plotting support via plotutils -PLOTUTILS_LIB_DEPENDS= libplotter.so:${PORTSDIR}/graphics/plotutils +PLOTUTILS_LIB_DEPENDS= libplotter.so:graphics/plotutils PLOTUTILS_CXXFLAGS= -I${LOCALBASE}/include -DQCL_PLOT PLOTUTILS_LDFLAGS= -L${LOCALBASE}/lib -lplotter diff --git a/science/rubygem-cdo/Makefile b/science/rubygem-cdo/Makefile index 42e564c7f339..8fb17a2cf481 100644 --- a/science/rubygem-cdo/Makefile +++ b/science/rubygem-cdo/Makefile @@ -12,7 +12,7 @@ COMMENT= Ruby binding to CDO (Climate Data Operators) LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= cdo:${PORTSDIR}/science/cdo +RUN_DEPENDS= cdo:science/cdo NO_ARCH= yes USE_RUBY= yes diff --git a/science/rubygem-ruby-dcl/Makefile b/science/rubygem-ruby-dcl/Makefile index 2cb937d6d78f..598a00724298 100644 --- a/science/rubygem-ruby-dcl/Makefile +++ b/science/rubygem-ruby-dcl/Makefile @@ -12,10 +12,10 @@ COMMENT= Ruby interface to the scientific graphic library DCL LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -BUILD_DEPENDS= rubygem-narray>=0.5.5:${PORTSDIR}/math/rubygem-narray -LIB_DEPENDS= libcdcl.so:${PORTSDIR}/science/cdcl -RUN_DEPENDS= rubygem-narray>=0.5.5:${PORTSDIR}/math/rubygem-narray \ - rubygem-narray_miss>0:${PORTSDIR}/math/rubygem-narray_miss +BUILD_DEPENDS= rubygem-narray>=0.5.5:math/rubygem-narray +LIB_DEPENDS= libcdcl.so:science/cdcl +RUN_DEPENDS= rubygem-narray>=0.5.5:math/rubygem-narray \ + rubygem-narray_miss>0:math/rubygem-narray_miss USE_RUBY= yes USE_RUBY_EXTCONF= yes diff --git a/science/rubygem-ruby-netcdf/Makefile b/science/rubygem-ruby-netcdf/Makefile index f894571c1b1a..1490b72633d7 100644 --- a/science/rubygem-ruby-netcdf/Makefile +++ b/science/rubygem-ruby-netcdf/Makefile @@ -9,9 +9,9 @@ MASTER_SITES= RG MAINTAINER= ruby@FreeBSD.org COMMENT= Ruby interface to the NetCDF scientific IO library -LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf -RUN_DEPENDS= rubygem-narray>=0:${PORTSDIR}/math/rubygem-narray \ - rubygem-narray_miss>=0:${PORTSDIR}/math/rubygem-narray_miss +LIB_DEPENDS= libnetcdf.so:science/netcdf +RUN_DEPENDS= rubygem-narray>=0:math/rubygem-narray \ + rubygem-narray_miss>=0:math/rubygem-narray_miss USE_RUBY= yes USE_RUBYGEMS= yes diff --git a/science/sigrok-cli/Makefile b/science/sigrok-cli/Makefile index 50e4761b2acd..4b31aa417866 100644 --- a/science/sigrok-cli/Makefile +++ b/science/sigrok-cli/Makefile @@ -12,9 +12,9 @@ COMMENT= Framework for hardware logic analyzers, CLI client LICENSE= GPLv3 -LIB_DEPENDS= libserialport.so:${PORTSDIR}/devel/libserialport \ - libsigrok.so:${PORTSDIR}/devel/libsigrok \ - libsigrokdecode.so:${PORTSDIR}/devel/libsigrokdecode +LIB_DEPENDS= libserialport.so:devel/libserialport \ + libsigrok.so:devel/libsigrok \ + libsigrokdecode.so:devel/libsigrokdecode PLIST_FILES= bin/sigrok-cli man/man1/sigrok-cli.1.gz diff --git a/science/sigrok-firmware/Makefile b/science/sigrok-firmware/Makefile index e79ba588d155..6c2ca6d75ada 100644 --- a/science/sigrok-firmware/Makefile +++ b/science/sigrok-firmware/Makefile @@ -9,8 +9,8 @@ PKGNAMEPREFIX= sigrok- MAINTAINER= uffe@uffe.org COMMENT= Sigrok firmware -RUN_DEPENDS= parseelf.py:${PORTSDIR}/science/sigrok-firmware-utils \ - ${LOCALBASE}/share/sigrok-firmware/fx2lafw-cypress-fx2.fw:${PORTSDIR}/science/sigrok-firmware-fx2lafw +RUN_DEPENDS= parseelf.py:science/sigrok-firmware-utils \ + ${LOCALBASE}/share/sigrok-firmware/fx2lafw-cypress-fx2.fw:science/sigrok-firmware-fx2lafw USE_GITHUB= yes GH_ACCOUNT= uffejakobsen diff --git a/science/silo/Makefile b/science/silo/Makefile index 16a24fee9e38..edf77d682e85 100644 --- a/science/silo/Makefile +++ b/science/silo/Makefile @@ -27,7 +27,7 @@ OPTIONS_SUB= yes FORTRAN_CONFIGURE_ENABLE= fortran FORTRAN_USES= fortran -HDF5_LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 +HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 HDF5_CONFIGURE_ON= --with-hdf5=${LOCALBASE}/include,${LOCALBASE}/lib HDF5_PLIST_SUB= SUFX_HDF5="h5" HDF5_PLIST_SUB_OFF= SUFX_HDF5="" diff --git a/science/step/Makefile b/science/step/Makefile index 5e7a7986e61b..43c98206b8d7 100644 --- a/science/step/Makefile +++ b/science/step/Makefile @@ -9,9 +9,9 @@ DIST_SUBDIR= KDE/${PORTVERSION} MAINTAINER= kde@FreeBSD.org COMMENT= KDE 4 interactive physics simulator -BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/eigen2.pc:${PORTSDIR}/math/eigen2 -LIB_DEPENDS= libqalculate.so:${PORTSDIR}/math/libqalculate \ - libgsl.so:${PORTSDIR}/math/gsl +BUILD_DEPENDS= ${LOCALBASE}/libdata/pkgconfig/eigen2.pc:math/eigen2 +LIB_DEPENDS= libqalculate.so:math/libqalculate \ + libgsl.so:math/gsl USE_KDE4= kdelibs kdeprefix automoc4 USES= cmake:outsource pkgconfig tar:xz diff --git a/science/udunits/Makefile b/science/udunits/Makefile index 76e1275f1852..5b2ecee56b1b 100644 --- a/science/udunits/Makefile +++ b/science/udunits/Makefile @@ -10,7 +10,7 @@ MASTER_SITES= ftp://ftp.unidata.ucar.edu/pub/udunits/ \ MAINTAINER= sunpoet@FreeBSD.org COMMENT= Library for manipulating units of physical quantities -LIB_DEPENDS= libexpat.so:${PORTSDIR}/textproc/expat2 +LIB_DEPENDS= libexpat.so:textproc/expat2 OPTIONS_DEFINE= DOCS diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile index 6c843fa97b1f..7d4cefbf8fa6 100644 --- a/science/v_sim/Makefile +++ b/science/v_sim/Makefile @@ -37,7 +37,7 @@ PLIST_SUB+= NLS="@comment " .endif .if !defined(WITHOUT_CDF) -LIB_DEPENDS+= libnetcdf.so:${PORTSDIR}/science/netcdf +LIB_DEPENDS+= libnetcdf.so:science/netcdf CONFIGURE_ARGS+=--with-netcdf=${LOCALBASE} PLIST_SUB+= CDF="" .else @@ -46,7 +46,7 @@ PLIST_SUB+= CDF="@comment " .endif .if !defined(WITHOUT_BABEL) -LIB_DEPENDS+= libopenbabel.so:${PORTSDIR}/science/openbabel +LIB_DEPENDS+= libopenbabel.so:science/openbabel CONFIGURE_ARGS+=--with-openbabel PLIST_SUB+= BABEL="" .else diff --git a/science/veusz/Makefile b/science/veusz/Makefile index 433706a86846..1ce5962234f3 100644 --- a/science/veusz/Makefile +++ b/science/veusz/Makefile @@ -13,8 +13,8 @@ COMMENT= Scientific plotting package LICENSE= GPLv2 RUN_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}qt4-gui>=0:${PORTSDIR}/x11-toolkits/py-qt4-gui \ - ${PYTHON_PKGNAMEPREFIX}qt4-svg>0:${PORTSDIR}/graphics/py-qt4-svg + ${PYTHON_PKGNAMEPREFIX}qt4-gui>=0:x11-toolkits/py-qt4-gui \ + ${PYTHON_PKGNAMEPREFIX}qt4-svg>0:graphics/py-qt4-svg BUILD_DEPENDS:= ${RUN_DEPENDS} USES= python diff --git a/science/vmd/Makefile b/science/vmd/Makefile index 8024bf887c95..89760f0f600f 100644 --- a/science/vmd/Makefile +++ b/science/vmd/Makefile @@ -15,12 +15,12 @@ DISTFILES= ${VMD_DIST} \ MAINTAINER= ports@FreeBSD.org COMMENT= Molecular visualization program -BUILD_DEPENDS= makedepend:${PORTSDIR}/devel/makedepend \ +BUILD_DEPENDS= makedepend:devel/makedepend \ ${PYNUMERIC} -LIB_DEPENDS= libtcl85.so:${PORTSDIR}/lang/tcl85 \ - libtk85.so:${PORTSDIR}/x11-toolkits/tk85 \ - libfltk.so:${PORTSDIR}/x11-toolkits/fltk \ - libnetcdf.so:${PORTSDIR}/science/netcdf +LIB_DEPENDS= libtcl85.so:lang/tcl85 \ + libtk85.so:x11-toolkits/tk85 \ + libfltk.so:x11-toolkits/fltk \ + libnetcdf.so:science/netcdf RUN_DEPENDS= ${PYNUMERIC} USES= gmake perl5 python |