diff options
Diffstat (limited to 'textproc')
| -rw-r--r-- | textproc/py-martel/Makefile | 18 | ||||
| -rw-r--r-- | textproc/py-martel/distinfo | 2 | ||||
| -rw-r--r-- | textproc/py-martel/pkg-descr | 13 | ||||
| -rw-r--r-- | textproc/py-martel/pkg-plist | 22 |
4 files changed, 30 insertions, 25 deletions
diff --git a/textproc/py-martel/Makefile b/textproc/py-martel/Makefile index 36845a6f06fd..17fb1661b76f 100644 --- a/textproc/py-martel/Makefile +++ b/textproc/py-martel/Makefile @@ -6,32 +6,34 @@ # PORTNAME= martel -PORTVERSION= 0.3.5 +PORTVERSION= 0.4 PORTEPOCH= 1 CATEGORIES= textproc biology python MASTER_SITES= http://www.biopython.org/~dalke/Martel/ -PKGNAMEPREFIX= py- -DISTNAME= Martel-0.35 +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} +DISTNAME= Martel-0.4 MAINTAINER= johann@egenetics.com RUN_DEPENDS= ${PYTHON_SITELIBDIR}/TextTools/__init__.py:${PORTSDIR}/textproc/py-mxTextTools PYTHON_VERSION= python2.0 -NO_BUILD= yes MARTEL_DIR= ${PYTHON_SITELIBDIR}/Martel MARTEL_EXAMPLEDIR=${PREFIX}/share/examples/martel MARTEL_DOCDIR= ${PREFIX}/share/doc/martel +do-build: + @ ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${WRKSRC} + @ ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${WRKSRC} + do-install: @ ${MKDIR} ${MARTEL_DIR} - @ (cd ${WRKSRC} && find *.py examples formats test \ + @ (cd ${WRKSRC} && find *.py *.pyc *.pyo formats test \ | cpio --quiet -pdum -R ${BINOWN}:${BINGRP} ${MARTEL_DIR}) - @ ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${MARTEL_DIR} - @ ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${MARTEL_DIR} - @ ${MKDIR} ${MARTEL_EXAMPLEDIR} + @ ${MKDIR} ${MARTEL_EXAMPLEDIR}/builders @ ${INSTALL_DATA} ${WRKSRC}/examples/* ${MARTEL_EXAMPLEDIR} + @ ${INSTALL_DATA} ${WRKSRC}/builders/* ${MARTEL_EXAMPLEDIR}/builders post-install: .if !defined(NOPORTDOCS) diff --git a/textproc/py-martel/distinfo b/textproc/py-martel/distinfo index 008e484a8357..726f84441c80 100644 --- a/textproc/py-martel/distinfo +++ b/textproc/py-martel/distinfo @@ -1 +1 @@ -MD5 (Martel-0.35.tar.gz) = 8743c59c37132ecfe6a99c91f774409e +MD5 (Martel-0.4.tar.gz) = 3f54a121b70b69f6167dd61343c73cc0 diff --git a/textproc/py-martel/pkg-descr b/textproc/py-martel/pkg-descr index e4352842c123..2f2841f6dc3a 100644 --- a/textproc/py-martel/pkg-descr +++ b/textproc/py-martel/pkg-descr @@ -1,10 +1,13 @@ Martel is a parser generator, written in Python, which takes a regular -expression grammer for a format and turns the resultant parsed tree into a -set of callback events emulating the XML/SAX API. +expression grammer for a file format and turns the resultant parsed tree into +a set of callback events emulating the XML/SAX API. -It was originally intended for use in biocomputing applications (such as -Biopython - http://www.biopython.org/), where there is often a need to parse -existing flat and semi-structured file formats. However, it is generally +Essentially this means that existing and readily available XML tools can be +used to parse non-XML flat file formats. + +Martel was originally intended for use in biocomputing applications (such as +Biopython - http://www.biopython.org/) where there is often a need to parse +flat and semi-structured legacy file formats. However, it is generally applicable to the parsing of such files in all fields of endeavour. More information on Martel may be found in this conference poster: diff --git a/textproc/py-martel/pkg-plist b/textproc/py-martel/pkg-plist index 5513064284ee..2d28c8d99a52 100644 --- a/textproc/py-martel/pkg-plist +++ b/textproc/py-martel/pkg-plist @@ -19,16 +19,6 @@ lib/%%PYTHON_VERSION%%/site-packages/Martel/__init__.pyo lib/%%PYTHON_VERSION%%/site-packages/Martel/convert_re.py lib/%%PYTHON_VERSION%%/site-packages/Martel/convert_re.pyc lib/%%PYTHON_VERSION%%/site-packages/Martel/convert_re.pyo -lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/README -lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/pdb1plm.ent -lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/sample.swissprot -lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/swissprot2html.py -lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/swissprot2html.pyc -lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/swissprot2html.pyo -lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/test.mol -lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/toxml.py -lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/toxml.pyc -lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/toxml.pyo lib/%%PYTHON_VERSION%%/site-packages/Martel/formats/MDL_10_1996.py lib/%%PYTHON_VERSION%%/site-packages/Martel/formats/MDL_10_1996.pyc lib/%%PYTHON_VERSION%%/site-packages/Martel/formats/MDL_10_1996.pyo @@ -92,6 +82,9 @@ lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_Parser.pyo lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader.py lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader.pyc lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader.pyo +lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader2.py +lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader2.pyc +lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader2.pyo lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_blastall_2_0_10.py lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_blastall_2_0_10.pyc lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_blastall_2_0_10.pyo @@ -108,14 +101,21 @@ lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_swissprot38.py lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_swissprot38.pyc lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_swissprot38.pyo share/examples/martel/README +share/examples/martel/builders/SwissProtBuilder.py +share/examples/martel/builders/SwissProtBuilder.pyc +share/examples/martel/builders/SwissProtBuilder.pyo share/examples/martel/pdb1plm.ent share/examples/martel/sample.swissprot share/examples/martel/swissprot2html.py +share/examples/martel/swissprot2html.pyc +share/examples/martel/swissprot2html.pyo share/examples/martel/test.mol share/examples/martel/toxml.py +share/examples/martel/toxml.pyc +share/examples/martel/toxml.pyo +@dirrm share/examples/martel/builders @dirrm share/examples/martel @dirrm lib/%%PYTHON_VERSION%%/site-packages/Martel/test @dirrm lib/%%PYTHON_VERSION%%/site-packages/Martel/formats -@dirrm lib/%%PYTHON_VERSION%%/site-packages/Martel/examples @dirrm lib/%%PYTHON_VERSION%%/site-packages/Martel @unexec rm -rf %D/share/doc/martel 2>/dev/null || true |