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* Remove expired ports:Rene Ladan2019-10-161-2/+0
* biology/tophat: Fast splice junction mapper for RNA-Seq readsJason W. Bacon2019-09-271-0/+1
* biology/py-multiqc: Aggregate bioinformatics analysis reportsJason W. Bacon2019-09-231-0/+1
* biology/haplohseq: Identify regions of allelic imbalanceJason W. Bacon2019-09-161-0/+1
* New port: biology/libbigwig: C library for handling bigWig files (containing ...Yuri Victorovich2019-07-111-0/+1
* New port: biology/viennarna: Alignment tools for the structural analysis of RNAYuri Victorovich2019-06-241-0/+1
* New port: biology/treekin: Efficient computation of RNA folding dynamicsYuri Victorovich2019-06-151-0/+1
* biology/bolt-lmm: Mixed model association testing and variance component anal...Jason W. Bacon2019-05-261-0/+1
* New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their...Yuri Victorovich2019-05-251-0/+1
* New port: biology/mothur: Software for bioinformatics of the microbial ecolog...Yuri Victorovich2019-05-201-0/+1
* New port: biology/hhsuite: Remote protein homology detection suiteYuri Victorovich2019-05-191-0/+1
* biology/gemma: Genome-wide Efficient Mixed Model AssociationJason W. Bacon2019-05-171-0/+1
* biology/vsearch: Versatile open-source tool for metagenomicsJason W. Bacon2019-05-091-0/+1
* biology/fastp: Ultra-fast all-in-one FASTQ preprocessorJason W. Bacon2019-05-031-0/+1
* biology/minimap2: Pairwise aligner for genomic and spliced nucleotide sequencesJason W. Bacon2019-04-241-0/+1
* biology/star: Spliced Transcripts Alignment to a ReferenceJason W. Bacon2019-04-211-0/+1
* New port: biology/py-xenaPython: API for Xena Hub to access genetic informati...Yuri Victorovich2019-04-121-0/+1
* biology/py-dnaio: Read and write FASTQ and FASTAJason W. Bacon2019-03-241-0/+1
* Qt4 deprecation: Remove Qt4 and its consumes.Tobias C. Berner2019-03-161-1/+0
* New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end se...Yuri Victorovich2019-02-251-0/+1
* Add p5-Bio-Cluster 1.7.3Sunpoet Po-Chuan Hsieh2019-02-201-0/+1
* New port: biology/figtree: Graphical viewer of phylogenetic treesYuri Victorovich2019-02-031-0/+1
* New port: biology/graphlan: High-quality circular representations of taxonomi...Yuri Victorovich2019-02-031-0/+1
* New port: biology/prodigy-lig: Prediction of protein-small molecule binding a...Yuri Victorovich2019-02-031-0/+1
* New port: biology/prodigal: Protein-coding gene prediction for prokaryotic ge...Yuri Victorovich2019-02-031-0/+1
* New port: biology/dsr-pdb: Simple C++ PDB reader (reads the protein descripti...Yuri Victorovich2019-01-291-0/+1
* Sort categories Makefiles.Mathieu Arnold2019-01-221-1/+1
* New port: biology/hisat2: Program for mapping next-generation sequencing readsJason W. Bacon2019-01-111-0/+1
* Remove expired ports:Rene Ladan2018-12-211-1/+0
* New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNEYuri Victorovich2018-12-151-0/+1
* Remove biology/njplotJoseph Mingrone2018-12-111-1/+0
* New port: math/checkm: Quality assessment tool for the microbial genomesYuri Victorovich2018-12-071-0/+1
* New port: math/groopm: Metagenomic binning suiteYuri Victorovich2018-12-071-0/+1
* New port: biology/gatk: Variant discovery in high-throughput sequencing dataYuri Victorovich2018-12-031-0/+1
* New port: biology/py-gffutils: Work with GFF and GTF files in a flexible data...Yuri Victorovich2018-10-191-0/+1
* New port: biology/py-pyfaidx: Efficient pythonic random access to fasta subse...Yuri Victorovich2018-10-191-0/+1
* New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) f...Yuri Victorovich2018-10-191-0/+1
* New port: biology/ncbi-cxx-toolkit: NCBI C++ ToolkitYuri Victorovich2018-10-081-0/+1
* biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/Yuri Victorovich2018-10-071-1/+0
* New port: biology/py-loompy: Work with .loom files for single-cell RNA-seq dataYuri Victorovich2018-09-211-0/+1
* Remove expired ports:Rene Ladan2018-08-161-1/+0
* Regular sorting of categories Makefiles.Mathieu Arnold2018-08-081-1/+1
* New port: biology/py-orange3-single-cell: Orange add-on for gene expression o...Yuri Victorovich2018-08-071-0/+1
* New port: biology/exonerate: Generic tool for sequence alignmentYuri Victorovich2018-07-131-0/+1
* New port: biology/stringtie: Transcript assembly and quantification for RNA-seqYuri Victorovich2018-07-111-0/+1
* New port: biology/cytoscape: Software to visualize molecular interaction netw...Yuri Victorovich2018-07-031-0/+1
* New port: biology/igv: Visualization tool for genomic datasetsYuri Victorovich2018-06-251-0/+1
* New port: biology/py-orange3-bioinformatics: Orange add-on providing common f...Yuri Victorovich2018-06-141-0/+1
* New port: biology/py-Genesis-PyAPI: API for the Genesis platform for genetics...Yuri Victorovich2018-06-131-0/+1
* New port: biology/ngs-sdk: Tools and libraries for using data in the INSDC Se...Yuri Victorovich2018-06-101-0/+1
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