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* Add nclever 4.0, a character-based version of NCBI's Entrez program.Johann Visagie2001-09-261-0/+1
| | | | | | | | PR: 30783 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=48207
* Add seqio 1.2.2, a set of C functions which can read/writeJohann Visagie2001-08-221-0/+1
| | | | | | | | | | biological sequence files. PR: 29922 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=46640
* Add treeviewx 0.1.1, a phylogenetic tree viewer.Johann Visagie2001-08-171-0/+1
| | | | | | | | PR: 29770 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=46356
* Add p5-bioperl-devel 0.9.0,Johann Visagie2001-08-141-0/+1
| | | | | | | | a collection of Perl modules for bioinformatics (developer's release). Notes: svn path=/head/; revision=46228
* Add lamarc 2001.08.06,Johann Visagie2001-08-071-0/+1
| | | | | | | | a package of programs for computing population parameters. Notes: svn path=/head/; revision=45915
* Add recombine 1.40, a program to fit population models across sites.Johann Visagie2001-08-061-0/+1
| | | | Notes: svn path=/head/; revision=45886
* Add fluctuate 1.30, a program to fit population models.Johann Visagie2001-08-061-0/+1
| | | | Notes: svn path=/head/; revision=45885
* Add coalesce 1.50, a program to fit population models.Johann Visagie2001-08-061-0/+1
| | | | Notes: svn path=/head/; revision=45884
* Add migrate 1.2,Johann Visagie2001-08-061-0/+1
| | | | | | | | a program to estimate population sizes and migration rates. Notes: svn path=/head/; revision=45878
* Add grappa 1.0.2, Genome Rearrangements Analysis and PhylogenyJohann Visagie2001-07-041-0/+1
| | | | | | | | | | Software. PR: 28541 Submitted by: dbader@eece.unm.edu Notes: svn path=/head/; revision=44738
* reimport biology/genpakYing-Chieh Liao2001-02-281-0/+1
| | | | Notes: svn path=/head/; revision=38875
* module name conflict with print/gp, so remove it and I'll reimport it againYing-Chieh Liao2001-02-281-1/+0
| | | | Notes: svn path=/head/; revision=38874
* add gpYing-Chieh Liao2001-02-271-0/+1
| | | | | | | GP is a set of small utilities to manipulate DNA sequences Notes: svn path=/head/; revision=38854
* - New port: biology/fasta3, which comprises the FASTA3 suite of DNA andJames E. Housley2001-02-111-0/+1
| | | | | | | | | | | | protein sequence search programs - FASTA3 updates only some of the elements of FASTA2, which is why I have submitted ports of both versions (as biology/fasta and biology/fasta3) PR: 24716 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=38207
* New port: biology/fasta, the FASTA2 suite of DNA and protein sequenceJames E. Housley2001-02-111-0/+1
| | | | | | | | | | search tools PR: 24715 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=38205
* add gaussian98, an ab-initio molecular orbital calculation program.FUJISHIMA Satsuki2001-02-101-0/+1
| | | | | | | | PR: 23577 Submitted by: NAKATA, Maho <chat95@mbox.kyoto-inet.or.jp> Notes: svn path=/head/; revision=38180
* New Port: biology/ncbi-toolkitJames E. Housley2000-10-291-0/+1
| | | | | | | | | | National Center for Biotechnology Information (NCBI) Development Toolkit. PR: 22388 Submitted by: Tony Maher <tony.maher@ebioinformatics.com> Notes: svn path=/head/; revision=34402
* Initial import of fastDNAml Version 1.2.2James E. Housley2000-10-121-0/+1
| | | | | | | | | | The faster variant of DNAML, makes phylogenetic trees using maximum likelihood PR: 21931 Submitted by: Motomichi Matsuzaki <mzaki@e-mail.ne.jp> Notes: svn path=/head/; revision=33727
* Initial import of biology/biojavaJames E. Housley2000-10-101-0/+1
| | | | | | | | PR: 21678 Submitted by: Brad Chapman <chapmanb@arches.uga.edu> Notes: svn path=/head/; revision=33667
* This is nab (nucleic acid builder), a language for macromoleculesJames E. Housley2000-10-101-0/+1
| | | | | | | | PR: 21585 Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU> Notes: svn path=/head/; revision=33640
* Add emboss, the European Molecular Biology Open Software SuiteNeil Blakey-Milner2000-07-311-0/+1
| | | | | | | | PR: ports/20317 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31178
* Add py-biopython, is a collection of Python packages and modules createdNeil Blakey-Milner2000-07-311-0/+1
| | | | | | | | | | | by the Biopython Project, intended to provide the basis for building bioinformatics applications in the Python language. PR: ports/20260 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31163
* Add BioPerl, a collection of Perl5 mods for bioinformatics/genomicsNeil Blakey-Milner2000-07-281-0/+1
| | | | | | | | PR: ports/20252 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31084
* Add p5-AcePerl, a perl interface to the ACEDB genome database systemNeil Blakey-Milner2000-07-281-0/+1
| | | | | | | | PR: ports/20223 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31083
* Add sim4, an implementation of the sim4 algorithm for aligning expressedNeil Blakey-Milner2000-07-271-0/+1
| | | | | | | | | | DNA with genomic sequences PR: ports/20219 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31064
* Add xdrawchem 0.82 - a program for drawing moleculesAlexander Langer2000-07-191-0/+1
| | | | Notes: svn path=/head/; revision=30857
* Activating the chemeq, clustalw, paml, and phylip ports.Steve Price2000-07-101-0/+4
| | | | Notes: svn path=/head/; revision=30409
* Added gperiodic and xmolwtSatoshi Taoka1999-09-061-0/+2
| | | | Notes: svn path=/head/; revision=21331
* Change Id->FreeBSD.David E. O'Brien1999-08-251-1/+1
| | | | Notes: svn path=/head/; revision=20941
* Added deft and ortep3Satoshi Taoka1999-05-191-1/+3
| | | | Notes: svn path=/head/; revision=18888
* Add platon and moldenSatoshi Taoka1999-05-071-1/+3
| | | | Notes: svn path=/head/; revision=18588
* Add mopac and psi88 (Move mopac and psi88 from misc to biology)Satoshi Taoka1999-05-061-1/+3
| | | | Notes: svn path=/head/; revision=18533
* Activate tinker.Joseph Koshy1998-11-171-1/+2
| | | | Notes: svn path=/head/; revision=14598
* Turn on hmmer.Steve Price1998-07-121-1/+2
| | | | Notes: svn path=/head/; revision=11872
* Activate povchem.Vanilla I. Shu1998-03-161-1/+2
| | | | Notes: svn path=/head/; revision=10174
* Activate kinemageJustin M. Seger1998-01-291-1/+2
| | | | Notes: svn path=/head/; revision=9513
* Activate seaview.Vanilla I. Shu1997-12-211-1/+2
| | | | Notes: svn path=/head/; revision=9151
* Activate babel.Vanilla I. Shu1997-12-211-1/+2
| | | | Notes: svn path=/head/; revision=9149
* Activate rasmol.Vanilla I. Shu1997-12-151-2/+2
| | | | Notes: svn path=/head/; revision=9084
* The new ports category "biology" starts here today. No DarwinSatoshi Asami1997-12-131-0/+6
jokes please! Notes: svn path=/head/; revision=9066
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