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* New port: biology/py-orange3-bioinformatics: Orange add-on providing common f...Yuri Victorovich2018-06-141-0/+1
* New port: biology/py-Genesis-PyAPI: API for the Genesis platform for genetics...Yuri Victorovich2018-06-131-0/+1
* New port: biology/ngs-sdk: Tools and libraries for using data in the INSDC Se...Yuri Victorovich2018-06-101-0/+1
* Remove expired ports:Rene Ladan2018-06-071-4/+0
* Add new port: biology/infernalKirill Ponomarev2018-06-061-0/+1
* biology/clustal-omega: Multiple alignment of nucleic acid and protein, replac...Jason W. Bacon2018-05-211-0/+1
* biology/clustalx: Multiple alignment of nucleic acid and protein sequences wi...Jason W. Bacon2018-05-211-0/+1
* New port, biology/hyphy: Hypothesis testing using PhylogeniesJoseph Mingrone2018-05-111-0/+1
* biology/unanimity: Pacific Biosciences consensus library and applicationsJason W. Bacon2018-04-241-0/+1
* biology/pbcopper: Core C++ library for Pacific Biosciences toolsJason W. Bacon2018-04-231-0/+1
* biology/pbbam: PacBio BAM C++ library, with SWIG bindingsJason W. Bacon2018-04-231-0/+1
* biology/pbseqan: Pacific Biosciences patched and stripped down SeqAnJason W. Bacon2018-04-211-0/+1
* biology/ddocent: Bash pipeline for RAD sequencingJason W. Bacon2018-04-201-0/+1
* biology/freebayes: Bayesian haplotype-based polymorphism discovery and genoty...Jason W. Bacon2018-04-201-0/+1
* biology/vcflib: C++ library and CLI tools for parsing and manipulating VCF filesJason W. Bacon2018-04-171-0/+1
* biology/fastahack: Utility for indexing and sequence extraction from FASTA filesJason W. Bacon2018-04-161-0/+1
* biology/smithwaterman: Smith-waterman-gotoh alignment algorithmJason W. Bacon2018-04-151-0/+1
* biology/tabixpp: C++ wrapper to tabix indexerJason W. Bacon2018-04-141-0/+1
* biology/pear-merger: Memory-efficient and accurate paired-end read mergerJason W. Bacon2018-04-041-0/+1
* biology/seqtk: Tool for processing sequences in FASTA/FASTQ formatJason W. Bacon2018-04-031-0/+1
* biology/trimadap: Trim adapter sequences from Illumina dataJason W. Bacon2018-04-031-0/+1
* biology/rainbow: Efficient clustering and assembling of short readsJason W. Bacon2018-04-021-0/+1
* biology/stacks: Software pipeline for building loci from short-read sequencesJason W. Bacon2018-03-311-0/+1
* biology/bamtools: API and toolkit for handling BAM filesJason W. Bacon2018-03-281-0/+1
* [new port] biology/canu: Single molecule sequence assemblerJason W. Bacon2017-12-221-0/+1
* [new port] biology/p5-TrimGalore: Wrapper around Cutadapt and FastQC for adap...Jason W. Bacon2017-12-091-0/+1
* [new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP)...Jason W. Bacon2017-12-021-0/+1
* [new port] biology/kallisto: Quantify abundances of transcripts from RNA-Seq ...Jason W. Bacon2017-12-021-0/+1
* [new port] biology/fastqc: Quality control tool for high throughput sequence ...Jason W. Bacon2017-11-301-0/+1
* [new port] biology/py-cutadapt: Finds and removes adapter sequences, primers, poJason W. Bacon2017-11-291-0/+1
* New port, biology/iqtree: Efficient phylogenomic softwareJoseph Mingrone2017-10-211-0/+1
* Add p5-Bio-FeatureIO 1.6.905Sunpoet Po-Chuan Hsieh2017-09-151-0/+1
* Remove expired ports:Rene Ladan2017-08-231-1/+0
* bx-python is a python library and associated set of scripts to allow for rapidMartin Wilke2017-05-061-0/+1
* pysam is a lightweight wrapper of the htslib C-API and provides facilities toMartin Wilke2017-05-061-0/+1
* 2017-04-30 devel/stormlib-ghost++: Unfetchable for more than six months (goog...Larry Rosenman2017-04-301-1/+0
* Move devel/rubygem-bio to biology/rubygem-bioSunpoet Po-Chuan Hsieh2017-02-051-0/+1
* - Add p5-Bio-Coordinate 1.007001Sunpoet Po-Chuan Hsieh2016-12-191-0/+1
* - Move biology/p5-bioperl-run to biology/p5-BioPerl-RunSunpoet Po-Chuan Hsieh2016-12-181-1/+1
* - Move biology/p5-bioperl to biology/p5-BioPerlSunpoet Po-Chuan Hsieh2016-12-181-1/+1
* biology/njplot: Revive and update to version 2.4Joseph Mingrone2016-11-161-0/+1
* Remove expired ports without open PRs:Rene Ladan2016-07-041-1/+0
* biology/seqan: update 1.3.1 -> 2.1.1Jason Unovitch2016-05-101-0/+1
* New port: biology/seqan-appsJason Unovitch2016-05-101-0/+1
* The BIOM file format (canonically pronounced biome) is designed to be aOlivier Duchateau2016-05-091-0/+1
* DNA query sequences against a protein reference database (BLASTP and BLASTXWen Heping2016-05-061-0/+1
* Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.Dmitry Marakasov2016-03-241-0/+1
* New port: biology/bowtie2.Raphael Kubo da Costa2016-03-231-0/+1
* New port: biology/slclust.Raphael Kubo da Costa2016-03-231-0/+1
* Trimmomatic performs a variety of useful trimming tasks for illuminaWen Heping2016-03-171-0/+1
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