aboutsummaryrefslogtreecommitdiff
path: root/biology/Makefile
Commit message (Expand)AuthorAgeFilesLines
* p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XMLWen Heping2010-03-011-0/+1
* python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)Wen Heping2009-12-291-0/+1
* pyfasta is a python module for fast, memory-efficient, pythonicWen Heping2009-11-181-0/+1
* Velvet is a de novo genomic assembler specially designed for short readDmitry Marakasov2009-11-071-0/+1
* Bio::SCF module allows you to read and update (in a restrictedMartin Wilke2009-08-281-0/+1
* Io_lib is a library of file reading and writing code to provide aMartin Wilke2009-08-281-0/+1
* Bio::NEXUS package provides an object-oriented, Perl-basedMartin Wilke2009-08-221-0/+1
* PhyML is a software that estimates maximum likelihood phylogenies fromDmitry Marakasov2009-07-211-0/+1
* p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. ThisMartin Wilke2009-07-011-0/+1
* PyCogent is a software library for genomic biology. It is a fully integratedMartin Wilke2009-06-221-0/+1
* Add the biology/crux port.Jason Evans2009-06-081-0/+1
* 2009-05-31 biology/p5-bioperl-devel: no longer under developmentMartin Wilke2009-06-051-2/+0
* LibSBML is an open-source programming library to help you read, write,Martin Wilke2009-05-281-0/+1
* Bio::Glite is an interface to G-language Genome Analysis EnvironmentMartin Wilke2009-04-021-0/+1
* p5-Bio-Graphics is a simple GD-based renderer (diagram drawer)Martin Wilke2009-03-101-0/+1
* - Delete biology/nab port after being marked DEPRECATED for three monthsPav Lucistnik2008-07-241-1/+0
* SSAHA is a software tool for very fast matching and alignment of DNAFelippe de Meirelles Motta2008-06-211-0/+1
* New port: biology/consed viewing and editing workbench for sequenceEdwin Groothuis2008-05-241-0/+1
* New port: biology/consed viewing and editing workbench for sequenceEdwin Groothuis2008-05-241-0/+1
* New port: biology/consed viewing and editing workbench for sequenceEdwin Groothuis2008-05-241-0/+1
* New port: biology/consed viewing and editing workbench for sequenceEdwin Groothuis2008-05-241-0/+1
* NJplot is a tree drawing program able to draw any phylogenetic tree expressedPav Lucistnik2008-05-141-0/+1
* MUSCLE is multiple alignment software for protein and nucleotide sequences.Pav Lucistnik2008-05-141-0/+1
* MAPMAKER/EXP is a linkage analysis package designed to help construct primaryRong-En Fan2008-04-061-0/+1
* MrBayes is a program for the Bayesian estimation of phylogeny.Martin Wilke2007-12-151-0/+1
* MUMmer is a modular system for the rapid whole genome alignment of finishedMartin Wilke2007-12-141-0/+1
* - Sort category MakefilesAndrew Pantyukhin2007-10-051-2/+2
* Remove expired leaf port:Vasil Dimov2007-01-251-1/+0
* The BioCocoa framework provides developers with the opportunity to addDirk Meyer2006-12-301-0/+1
* Adun is a new extendible molecular simulation program that alsoDirk Meyer2006-11-091-0/+1
* Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNACheng-Lung Sung2006-09-291-0/+1
* Folding@Home is a distributed computing project -- people from through out thePav Lucistnik2006-08-281-0/+1
* SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculatedPav Lucistnik2006-06-191-0/+1
* Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl.Aaron Dalton2006-05-131-0/+1
* Add protomol 2.0.3, OO, component based, framework for molecularEmanuel Haupt2006-05-051-0/+1
* Bioperl-run contain modules that provides a PERL interface to variousRenato Botelho2006-05-021-0/+1
* Bioperl-run contain modules that provides a PERL interface to variousRenato Botelho2006-05-021-0/+1
* Add lagan 1.2, efficient tools for large-scale multiple alignments ofRenato Botelho2006-03-161-0/+1
* Add mafft 5.734, multiple sequence alignments based on fast FourierRenato Botelho2006-03-151-0/+1
* Add dotter 20021204 # last modified date in FTP server, a viewer forRenato Botelho2006-03-151-0/+1
* Add blat 33, a fast tool for local sequence similarity searches.Renato Botelho2006-03-151-0/+1
* Add belvu 2.29, a viewer for multiple sequence alignments.Renato Botelho2006-03-151-0/+1
* Jalview is a multiple alignment editor written in Java. It is used widely in aHerve Quiroz2006-02-131-0/+1
* - Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoidAlexey Dokuchaev2006-01-191-0/+1
* - Remove expired portsPav Lucistnik2006-01-141-3/+0
* - Re-add p5-bioperl-devel, development version of biology/p5-bioperlSimon Barner2005-12-021-0/+1
* Remove expired portsKris Kennaway2005-11-051-1/+0
* Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser forEmanuel Haupt2005-10-151-0/+1
* Add p5-Bio-Das 1.02, client-side library for Distributed GenomeRenato Botelho2005-09-011-0/+1
* - biology/act is redundant after biology/artemis updateSergey Matveychuk2005-03-121-1/+0