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* biology/fastq-trim: Lightening fast sequence read trimmerJason W. Bacon2022-03-191-0/+1
* biology/py-bcbio-gff: Read and write Generic Feature Format (GFF)Jason W. Bacon2022-02-031-0/+2
* biology/libgff: GFF/GTF parsing library based on GCLibJason W. Bacon2021-12-051-0/+1
* biology/bio-mocha: bcftools plugin for mosaic chromosomal alterationsJason W. Bacon2021-12-031-0/+1
* biology/gffread: GFF/GTF format conversions, filtering, FASTA extraction, etcJason W. Bacon2021-11-101-0/+1
* */Makefile: Sort SUBDIRsPo-Chuan Hsieh2021-10-251-1/+1
* biology/py-deeptools: User-friendly tools for exploring deep-sequencing dataJason W. Bacon2021-10-141-0/+1
* biology/py-bigwig: Rename to biology/py-pybigwigJason W. Bacon2021-10-131-1/+1
* biology/py-pybigwig: remove, duplicate of biology/py-bigwigAntoine Brodin2021-10-131-1/+0
* biology/py-pybigwig: Fix poudriere buildJason W. Bacon2021-10-131-0/+1
* biology/py-pybigwig: Python access to bigWig files using libBigWigJason W. Bacon2021-10-131-0/+1
* biology/py-py2bit: Python interface for 2bit packed nucleotide filesJason W. Bacon2021-10-131-0/+1
* biology/bamutil: Utilities for working with SAM/BAM filesJason W. Bacon2021-10-121-0/+1
* biology/libneurosim: New port: Common interfaces for neuronal simulatorsYuri Victorovich2021-10-081-0/+1
* */Makefile: Sort SUBDIRsPo-Chuan Hsieh2021-09-211-2/+2
* biology/py-libsedml: New port: SED-ML library for PythonYuri Victorovich2021-09-191-0/+1
* biology/libsedml: New port: C++ SED-ML libraryYuri Victorovich2021-09-191-0/+1
* biology/py-libnuml: New port: Numerical Markup Language for PythonYuri Victorovich2021-09-191-0/+1
* biology/libnuml: New port: C++ library for Numerical Markup LanguageYuri Victorovich2021-09-191-0/+1
* biology/sam2pairwise: Show pairwise alignment for each read in a SAM fileJason W. Bacon2021-09-071-0/+1
* biology/py-pywgsim: Modified wgsim genomic data simulatorJason W. Bacon2021-09-061-0/+1
* biology/biolibc-tools: High-performance tools based on biolibcJason W. Bacon2021-08-301-0/+1
* biology/bfc: Correct sequencing errors from Illumina sequencing dataJason W. Bacon2021-08-231-0/+1
* biology/flash: Fast Length Adjustment of SHort readsJason W. Bacon2021-08-231-0/+1
* biology/py-PySCeS: New port: Python Simulator for Cellular SystemsYuri Victorovich2021-08-171-0/+1
* biology/py-python-libsbml: New port: LibSBML Python APIYuri Victorovich2021-08-171-0/+1
* biology/sigviewer: New port: Viewing application for biosignalsYuri Victorovich2021-08-171-0/+1
* biology/biosig: New port: Library for reading and writing different biosignal...Yuri Victorovich2021-08-171-0/+1
* biology/py-ont-fast5-api: Interface to Oxford Nanopore .fast5 filesJason W. Bacon2021-08-131-0/+1
* biology/erminej: Analyses of gene sets, e.g. gene expression profilingJason W. Bacon2021-07-091-0/+1
* biology/py-goatools: Tools for processing and visualizing Gene Ontology termsJason W. Bacon2021-07-021-0/+1
* biology/mmseqs2: Ultra fast and sensitive sequence search and clustering suiteJason W. Bacon2021-06-241-0/+1
* biology/sra-tools: NCBI's toolkit for handling data in INSDC Sequence Read Ar...Jason W. Bacon2021-06-221-0/+1
* biology/biostar-tools: Meta-port for Biostar Handbook toolsJason W. Bacon2021-06-181-0/+1
* biology/peak-classifier: Classify peaks based on GFF featuresJason W. Bacon2021-06-141-0/+1
* biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkitYuri Victorovich2021-05-261-0/+1
* biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set opera...Yuri Victorovich2021-05-261-0/+1
* New port: biology/seqan3: C++ header-only library for biological sequence ana...Yuri Victorovich2021-05-121-0/+1
* Hook biology/ucsc-userapps to the buildAntoine Brodin2021-04-251-0/+1
* biology/ncbi-entrez-direct: Access to the NCBI's interconnected databasesJason W. Bacon2021-04-241-0/+1
* New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and R...Yuri Victorovich2021-04-201-0/+1
* biology/snpeff: Genetic variant annotation and effect prediction toolboxJason W. Bacon2021-04-181-0/+1
* biology/bbmap: BBMap short read aligner, and other bioinformatic toolsJason W. Bacon2021-04-181-0/+1
* biology/readseq: Read and reformat biosequences, Java command-line versionJason W. Bacon2021-04-181-0/+1
* New port: biology/seqkit: Cross-platform and ultrafast toolkit for FASTA/Q fi...Yuri Victorovich2021-04-161-0/+1
* biology/py-crossmap: Lift over genomics coordinates between assembliesJason W. Bacon2021-04-121-0/+1
* biology/py-bigwig: Python access to bigWig files using libBigWigJason W. Bacon2021-04-121-0/+1
* New port: biology/ncbi-vdb: NCBI's virtualized back-end for accessing Sequenc...Yuri Victorovich2021-04-121-0/+1
* Remove expired ports:Rene Ladan2021-04-071-3/+0
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
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