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* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
| | | | Reported by: lwhsu
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* biology/canu: Drop dependency on gccJason W. Bacon2021-01-111-9/+3
| | | | | | | | | Replace compiler:openmp with compiler:c++11-lang and localbase PR: port/247753, ports/252379 Notes: svn path=/head/; revision=561227
* biology/canu: Upgrade to 2.1Jason W. Bacon2020-09-144-40/+24
| | | | | | | | | | Numerous functional improvements for ease of use and output quality A few bug fixes Reported by: portscout Notes: svn path=/head/; revision=548685
* Mark as BROKEN on powerpc64:Mark Linimon2020-05-171-0/+2
| | | | | | | | | | | | utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:81:5: error: 'get_deleter' declared as a 'virtual' field This may have something to do with compiler:openmp in USES. However, it has broken for more than 6 months at this point. Approved by: portmgr (tier-2 blanket) Notes: svn path=/head/; revision=535507
* biology/canu: Upgrade to 2.0Jason W. Bacon2020-03-203-9/+4
| | | | | | | | | Several routine enhancements and bug fixes Reported by: portscout Notes: svn path=/head/; revision=528792
* devel/boost-*: update to 1.72.0Jan Beich2019-12-111-0/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_72_0.html PR: 241449 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D22136 Notes: svn path=/head/; revision=519824
* biology/canu: Upgrade to 1.9Jason W. Bacon2019-11-084-127/+12
| | | | | | | | | Numerous bug fixes and enhancements Reported by: portscout Notes: svn path=/head/; revision=517066
* devel/boost-*: update to 1.71.0Jan Beich2019-08-191-1/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_71_0.html PR: 238827 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D20774 Notes: svn path=/head/; revision=509290
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-261-1/+1
| | | | | | | | | | | | | | | | | | as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330 Notes: svn path=/head/; revision=507372
* - Update WWWDmitry Marakasov2019-07-251-1/+1
| | | | | | | Approved by: portmgr blanket Notes: svn path=/head/; revision=507315
* biology/canu: Fix build on powerpc64 and aarch64Jason W. Bacon2019-04-184-20/+141
| | | | | | | | | | Should also work on powerpc and arm*, but unable to test PR: 237105 Reported by: pkubaj Notes: svn path=/head/; revision=499251
* devel/boost-*: update to 1.70.0Jan Beich2019-04-121-1/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_70_0.html PR: 235956 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D19303 Notes: svn path=/head/; revision=498698
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-12-121-1/+1
| | | | | | | | | | | | | | | | | | defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, as a double check, everything INDEX-11 showed depending on lang/gcc7. PR: 231590 Notes: svn path=/head/; revision=487272
* devel/boost-*: update to 1.69.0Jan Beich2018-12-121-0/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_69_0.html PR: 232525 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D17645 Notes: svn path=/head/; revision=487266
* biology/canu: Upgrade to 1.8, add experimental SLURM integrationJason W. Bacon2018-11-045-31/+102
| | | | | | | | | | | Solves build issue with gcc8. PR: 232930 Reported by: gerald Approved by: jrm (mentor, implicit) Notes: svn path=/head/; revision=484077
* devel/boost-*: update to 1.68.0Jan Beich2018-08-091-1/+1
| | | | | | | | | | | | - Switch to C++14 for libboost_system to support C++14 consumers Changes: http://www.boost.org/users/history/version_1_68_0.html PR: 229569 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D16165 Notes: svn path=/head/; revision=476723
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-07-291-0/+1
| | | | | | | | | | | | | | | | | in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which has now moved from GCC 6 to GCC 7 by default. This includes ports - featuring USE_GCC=yes or USE_GCC=any, - featuring USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and those - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x, c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib. PR: 222542 Notes: svn path=/head/; revision=475857
* Mark as broken on aarch64, and, where appropriate, armvX.Mark Linimon2018-06-211-0/+4
| | | | | | | | | While here, pet portlint. Approved by: portmgr (tier-2 blanket) Notes: svn path=/head/; revision=473009
* biology/canu: Upgrade to 1.7 releaseJason W. Bacon2018-04-265-37/+51
| | | | | | | | Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D15201 Notes: svn path=/head/; revision=468321
* devel/boost-*: update to 1.67.0Jan Beich2018-04-181-1/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_67_0.html PR: 227427 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D15030 Notes: svn path=/head/; revision=467711
* Bump PORTREVISIONs of all users of math/mpc that we just updated toGerald Pfeifer2018-03-101-1/+1
| | | | | | | version 1.1.0 (via revision 464079). Notes: svn path=/head/; revision=464084
* devel/boost-*: update to 1.66.0Jan Beich2018-01-181-0/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_66_0.html PR: 223922 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D13279 Notes: svn path=/head/; revision=459315
* biology/canu: Replace += with = for dependsJason W. Bacon2017-12-221-2/+2
| | | | | | | | Approved by: jrm Differential Revision: https://reviews.freebsd.org/D13574 Notes: svn path=/head/; revision=456982
* [new port] biology/canu: Single molecule sequence assemblerJason W. Bacon2017-12-225-0/+166
Approved by: jrm (mentor) or wen (mentor) Differential Revision: https://reviews.freebsd.org/D13574 Notes: svn path=/head/; revision=456950
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