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* For EMBOSS:Thierry Thomas2006-03-3117-1270/+7582
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This patch brings EMBOSS up to date with the current version. i. The patches included in files/ are bugfixes for files in EMBOSS-3.0.0 that appeared after the release. They are documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README This is just 'for the record' so that we remember to remove these patches in the next update. ii. EMBOSS is now installed by default in LOCALBASE/emboss This is to avoid CONFLICTS with other ports that install files with the same names. Installing EMBOSS to another PREFIX is also possible. iii. now EMBASSY and EMBOSS both store their distfiles in the same DIST_SUBDIR iv. use built-in PKGMESSAGE and SUB_FILES instead of doing it the old (manual) way For EMBASSY: This update brings embassy in sync with the update of EMBOSS to 3.0.0. Things that changed from previous version of the port: i. embassy now installs by default in $LOCALBASE/emboss (the new default PREFIX for emboss as well). ii. changed DIST_SUBDIR so that all the distfiles are put together with emboss. This makes sense(TM) iii. incorporated new EMBASSY apps (this accounts for the changes in OPTIONS and pkg-plist) iv. removed obsoleted patches Finally, I included a sample text that could go in UPDATING. PR: 93053 Submitted by: Fernan Aguero <fernan (at) iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=158468
* Conversion to a single libtool environment.Ade Lovett2006-02-232-1/+5
| | | | | | | Approved by: portmgr (kris) Notes: svn path=/head/; revision=156749
* Remove CONFLICTS with nss.Joe Marcus Clarke2006-02-021-1/+1
| | | | Notes: svn path=/head/; revision=155108
* SHA256ifyEdwin Groothuis2006-01-221-0/+1
| | | | | | | Approved by: krion@ Notes: svn path=/head/; revision=154141
* Mass-conversion to the USE_AUTOTOOLS New World Order. The code presentAde Lovett2005-11-151-1/+1
| | | | | | | | | | | | | | | | | | | | in bsd.autotools.mk essentially makes this a no-op given that all the old variables set a USE_AUTOTOOLS_COMPAT variable, which is parsed in exactly the same way as USE_AUTOTOOLS itself. Moreover, USE_AUTOTOOLS has already been extensively tested by the GNOME team -- all GNOME 2.12.x ports use it. Preliminary documentation can be found at: http://people.FreeBSD.org/~ade/autotools.txt which is in the process of being SGMLized before introduction into the Porters Handbook. Light blue touch-paper. Run. Notes: svn path=/head/; revision=148323
* - Update to 2.10.0Pav Lucistnik2005-05-293-995/+1221
| | | | | | | | | PR: ports/81579 Submitted by: "Choe, Cheng-Dae" <whitekid@gmail.com> Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=136389
* - Add (or fix) CONFLICTS line. The ports install bin/digest.Sergey Matveychuk2005-02-111-0/+2
| | | | | | | Approved by: portmgr (krion) Notes: svn path=/head/; revision=128541
* - Update to 2.9.0Sergey Matveychuk2004-11-269-1812/+1632
| | | | | | | | | | - Pass maintainership to submitter PR: ports/74333 Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar> Notes: svn path=/head/; revision=122469
* Add missing filesKris Kennaway2004-11-261-0/+11
| | | | Notes: svn path=/head/; revision=122450
* With portmgr hat on, reset inactive maintainer.Mark Linimon2004-11-201-1/+1
| | | | Notes: svn path=/head/; revision=121989
* Fix MASTER_SITES:Volker Stolz2004-06-231-2/+2
| | | | | | | | | | | | - add trailing slash - ftp.ebi.ac.uk only has 2.8.0 PR: ports/67427 Submitted by: Roman Neuhauser Approved by: maintainer timeout Notes: svn path=/head/; revision=112027
* Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.Joe Marcus Clarke2004-02-041-1/+1
| | | | | | | (Part 2) Notes: svn path=/head/; revision=99920
* Define USE_PERL5_BUILD, not erroneous USE_PERL.Trevor Johnson2003-11-201-1/+1
| | | | | | | Submitted by: Oliver Eikemeier Notes: svn path=/head/; revision=94477
* Define USE_PERL to make Perl available for (mostly deprecated)Trevor Johnson2003-11-201-0/+1
| | | | | | | "perl -pi -e" construction. Notes: svn path=/head/; revision=94465
* o Main modificationNorikatsu Shigemura2003-08-181-6/+4
| | | | | | | | | | | | | | | | | | | | | graphics/gd(based on 1.8.4) -> graphics/gd1 graphics/gd2(based on 2.0.15) -> graphics/gd graphics/p5-GD(based on 1.41) -> graphics/p5-GD1 graphics/p5-GD2(based on 2.07) -> graphics/p5-GD japanese/gd -> japanese/gd1 japanese/gd2 -> japanese/gd o Include some feature WITH_XPM(w/, w/o WITHOUT_X11) o Chase this modification o Fix build error [1] PR: ports/54540 Submitted by: Ports Fury Approved by: maintainer (blanket) Reported by: bento via kris [1] Notes: svn path=/head/; revision=87214
* BROKEN: Checksum mismatchKris Kennaway2003-08-071-0/+2
| | | | Notes: svn path=/head/; revision=86470
* o Change library name from libgd to libgd1.Norikatsu Shigemura2003-07-111-1/+2
| | | | | | | | | | | | o Do not install everything except headers and libraries (to avoid conflicting with graphics/gd2) o Fix dependency on new libgd1(for many ports). PR: ports/54100 Submitted by: Ports Fury Notes: svn path=/head/; revision=84696
* Clear moonlight beckons.Ade Lovett2003-03-072-1/+1
| | | | | | | | | | Requiem mors pacem pkg-comment, And be calm ports tree. E Nomini Patri, E Fili, E Spiritu Sancti. Notes: svn path=/head/; revision=77045
* - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)Johann Visagie2002-09-272-9/+7
| | | | | | | | Submitted by: kris, bento Approved by: Implicitly by first rule of ports freeze, I hope! Notes: svn path=/head/; revision=67164
* BROKEN: Does not fetchKris Kennaway2002-09-201-0/+2
| | | | Notes: svn path=/head/; revision=66901
* - Update to version 2.4.1Johann Visagie2002-07-054-111/+183
| | | | | | | | | | | - Unmark BROKEN - Start adding support for Jemboss Java-based GUI (not active yet) PR: 40198 ; many private requests Submitted by: Tilman Linneweh <tilman@arved.de> (2.4.1 update) Notes: svn path=/head/; revision=62472
* BROKEN: incorrect checksumsKris Kennaway2002-05-171-0/+2
| | | | Notes: svn path=/head/; revision=59311
* Add USE_SUBMAKE, where it might be necessary.Maxim Sobolev2002-03-251-0/+1
| | | | Notes: svn path=/head/; revision=56610
* - Update to version 2.2.0Johann Visagie2002-01-183-15/+335
| | | | | | | | | | | | - Update included EMBASSY package EMNU - Fix a long-standing bug in Makefile that would preclude PKGMESSAGE from being generated properly - Consider this an interim update merely to track the latest version - more work is required to activate the newly included "Jemboss" Java GUI interface Notes: svn path=/head/; revision=53296
* - Update port to version 2.0.1Johann Visagie2001-08-035-24/+110
| | | | | | | - Add two new EMBASSY applications, MEME and HMMER. Notes: svn path=/head/; revision=45769
* Remove obsolete pointer to online documentation.Johann Visagie2001-07-111-4/+2
| | | | Notes: svn path=/head/; revision=45038
* Update package's URL; my email address.Johann Visagie2001-07-112-3/+3
| | | | Notes: svn path=/head/; revision=45037
* Updating my email address in my remaining ports.Johann Visagie2001-06-271-1/+1
| | | | | | | Prompted by: vanilla Notes: svn path=/head/; revision=44495
* Update to 1.13.3; remove bogus file.Johann Visagie2001-06-154-71/+9
| | | | | | | | PR: 28119 Reviewed by: nbm Notes: svn path=/head/; revision=44019
* Update to version 1.13.1Kevin Lo2001-05-305-42/+240
| | | | | | | | PR: 27768 Submitted by: MAINTAINER Notes: svn path=/head/; revision=43313
* Update the EMBOSS suite (biology/emboss) to version 1.12.0James E. Housley2001-05-073-138/+25
| | | | | | | | PR: 27179 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=42360
* Update the EMBOSS suite to v1.11.0Neil Blakey-Milner2001-03-123-7/+12
| | | | | | | | PR: 25728 Submitted by: johann@egenetics.com Notes: svn path=/head/; revision=39639
* Update to version 1.10.1Kevin Lo2001-02-283-8/+7
| | | | | | | | PR: 25449 Submitted by: maintainer Notes: svn path=/head/; revision=38900
* Update to version 1.10.0Kevin Lo2001-02-205-24/+51
| | | | | | | | PR: 25228 Submitted by: MAINTAINER Notes: svn path=/head/; revision=38518
* Chase graphics/gd's shlib version bump.Akinori MUSHA2001-02-121-1/+2
| | | | Notes: svn path=/head/; revision=38246
* - Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1Kevin Lo2001-01-2910-77/+118
| | | | | | | | | | | - Update the EMBASSY package EMNU from 1.0.2 to 1.0.3 - Merged the four pkg-plist* files into one PR: 24717 Submitted by: MAINTAINER Notes: svn path=/head/; revision=37757
* Upgrade to version 1.9.0Kevin Lo2001-01-246-13/+47
| | | | | | | | PR: 24597 Submitted by: MAINTAINER Notes: svn path=/head/; revision=37536
* Update distfiles' checksums after the distfiles have been rerolled yetPeter Pentchev2000-12-042-4/+5
| | | | | | | | | | again without changing names or versions. Also add a new MASTER_SITE. PR: 23262 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=35651
* Distfile tarballs were rerolled without notice due to a minor bug.Peter Pentchev2000-11-301-4/+4
| | | | | | | | PR: 23193 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=35565
* - Update port biology/emboss from 1.7.0 to 1.8.0James E. Housley2000-11-284-17/+124
| | | | | | | | PR: 23130 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=35477
* Make nolonger support :U. Fix to compensate for that.James E. Housley2000-11-191-3/+6
| | | | | | | | Submitted by: fenner Approved by: MAINTAINER Notes: svn path=/head/; revision=35251
* - This is a fairly extensive rework of this port.James E. Housley2000-11-133-0/+56
| | | | | | | | | | | | | | - "EMBASSY" applications are third party tools which have been adapted to function as part of EMBOSS, but which are not included with the base EMBOSS distribution for licensing or other reasons. This new version of the EMBOSS port now contains the three current EMBASSY applications as well, and during installation the user is presented with a dialog(1) menu to PR: 22818 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=35081
* - This is a fairly extensive rework of this port.James E. Housley2000-11-134-5/+150
| | | | | | | | | | | | | | | - "EMBASSY" applications are third party tools which have been adapted to function as part of EMBOSS, but which are not included with the base EMBOSS distribution for licensing or other reasons. This new version of the EMBOSS port now contains the three current EMBASSY applications as well, and during installation the user is presented with a dialog(1) menu to choose which of these should be isntalled. PR: 22818 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=35080
* Make portlint happy, remove a spaceJames E. Housley2000-11-011-1/+1
| | | | Notes: svn path=/head/; revision=34535
* Update to version 1.7.0James E. Housley2000-11-013-2/+11
| | | | | | | | PR: 22474 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=34533
* - Update to 1.6.0Kevin Lo2000-10-103-363/+372
| | | | | | | | | | - Reorder packing list PR: 21857 Submitted by: MAINTAINER Notes: svn path=/head/; revision=33651
* Add USE_XLIBKris Kennaway2000-09-221-0/+1
| | | | Notes: svn path=/head/; revision=32989
* Upgrade to 1.5.0Neil Blakey-Milner2000-09-084-66/+113
| | | | | | | | PR: 21108 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=32420
* Update to emboss 1.4.0.Neil Blakey-Milner2000-09-074-52/+83
| | | | | | | | PR: ports/20898 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=32388
* USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.Maxim Sobolev2000-08-211-1/+0
| | | | Notes: svn path=/head/; revision=31811
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