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* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
| | | | Reported by: lwhsu
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* biology/hhsuite: Update 3.2.0 -> 3.3.0Yuri Victorovich2020-08-274-46/+4
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=546314
* biology/hhsuite: fix build on powerpc64 elfv2Piotr Kubaj2020-05-111-1/+4
| | | | | | | | | Use GCC instead of Clang: /usr/lib/clang/10.0.0/include/mmintrin.h:216:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw' return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2); Notes: svn path=/head/; revision=534934
* - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)Danilo Egea Gondolfo2020-04-191-3/+2
| | | | | | | | | - Remove option for net/openmpi2 from science/pnetcdf (net/openmpi2 is deprecated and will be removed) - Fix science/gromacs plist when MPI option is enabled - Bump PORTREVISION for all the consumers of net/openmpi Notes: svn path=/head/; revision=532095
* Drop dependency on devel/openmpJan Beich2020-03-081-2/+1
| | | | | | | | | | - Drop if devel/llvm* was used as a substitute Approved by: yuri, rene (earlier version) Differential Revision: https://reviews.freebsd.org/D23020 Notes: svn path=/head/; revision=528082
* devel/openmp: update to 9.0.0Jan Beich2019-09-211-1/+1
| | | | | | | | | | | - Connect tests to the framework to help QA remaining patches - Force rebuild all consumers after https://reviews.llvm.org/D59783 Changes: http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log ABI: https://abi-laboratory.pro/tracker/timeline/llvm_openmp/ Notes: svn path=/head/; revision=512535
* biology/hhsuite: fix build on powerpc64Piotr Kubaj2019-08-051-2/+7
| | | | | | | | | | | This port can't use Altivec. Instead, it's possible to use GCC's translation layer from SSE. Adjust build flags to do it. PR: 239645 Approved by: yuri (maintainer), tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D21160 Notes: svn path=/head/; revision=508177
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-261-0/+1
| | | | | | | | | | | | | | | | | | as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330 Notes: svn path=/head/; revision=507372
* biology/hhsuite: Fix build on platforms where SIMD instruction set doesn't ↵Yuri Victorovich2019-05-222-0/+36
| | | | | | | | | | | exist or isn't detected. It forces it to default to SSE2 on amd64/i386 and relaxes the SIMD requirement on all other platforms. Reported by: fallout Notes: svn path=/head/; revision=502244
* New port: biology/hhsuite: Remote protein homology detection suiteYuri Victorovich2019-05-197-0/+127
Notes: svn path=/head/; revision=502015
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