ports - FreeBSD ports tree

	Commit message (Collapse)	Author	Age	Files	Lines
*	biology/jellyfish: Upgrade to 2.2.10, patch for powerpc64	Jason W. Bacon	2019-05-13	1	-0/+2
\| \| \| \| \| \| \| \|	PR: 237868 Submitted by: pkubaj Notes: svn path=/head/; revision=501578
*	biology/jellyfish: Update to version 2.2.6	Joseph Mingrone	2016-12-19	1	-48/+48
\| \| \| \| \| \| \| \| \| \| \| \| \| \|	Upstream changes since version 2.2.4: - Fix compilation warnings/errors with newer version of gcc (5.3 & 6.1). - Fix bug in parsing function that made it stop on sequences that consist of only empty lines. - New methods in bindings to enumerate the mers of a string. Approved by: AMDmi3 (mentor) Differential Revision: https://reviews.freebsd.org/D8204 Notes: svn path=/head/; revision=428954
*	Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.	Dmitry Marakasov	2016-03-24	1	-0/+55
	A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers quickly by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. WWW: http://www.genome.umd.edu/jellyfish.html PR: 207929 Submitted by: bacon4000@gmail.com Notes: svn path=/head/; revision=411785