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* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* Set CMAKE options explicitlySunpoet Po-Chuan Hsieh2020-12-201-0/+2
| | | | Notes: svn path=/head/; revision=558745
* Add EXPAT, LIBXML and XERCES optionsSunpoet Po-Chuan Hsieh2020-12-191-2/+13
| | | | | | | It allows choosing XML parser library. Notes: svn path=/head/; revision=558491
* Update to 5.19.0Sunpoet Po-Chuan Hsieh2020-12-104-12/+18
| | | | | | | Changes: https://github.com/sbmlteam/libsbml/releases Notes: svn path=/head/; revision=557486
* Convert REINPLACE_CMD to patch fileSunpoet Po-Chuan Hsieh2020-09-292-1/+22
| | | | Notes: svn path=/head/; revision=550609
* Update PYTHON option to use Python 3Sunpoet Po-Chuan Hsieh2020-09-271-5/+2
| | | | Notes: svn path=/head/; revision=550299
* Move devel/swig30 to devel/swig and update to 4.0.1Sunpoet Po-Chuan Hsieh2020-06-171-4/+2
| | | | | | | | | | | | | | | - Do not silence installation message - Update dependent ports: - Fix build with swig 4.0.1 - Update *_DEPENDS - Remove BINARY_ALIAS Changes: http://www.swig.org/news.php PR: 246613 Exp-run by: antoine Notes: svn path=/head/; revision=539491
* Clean up MakefileSunpoet Po-Chuan Hsieh2020-02-081-1/+0
| | | | Notes: svn path=/head/; revision=525568
* Use USES=pathfixSunpoet Po-Chuan Hsieh2019-06-221-21/+14
| | | | | | | | | | | - Add USES=gnome - Use = instead of += for PLIST_SUB - Use CMAKE_BOOL - Cosmetic change - Take maintainership Notes: svn path=/head/; revision=504890
* - Update to 5.18.0Wen Heping2019-05-203-29/+22
| | | | Notes: svn path=/head/; revision=502097
* Change cmake default behaviour to outsource.Tobias C. Berner2018-12-251-1/+1
| | | | | | | | | | | | | | Ports that build out of source now simply can use "USES=cmake" instead of "USES=cmake:outsource". Ports that fail to build out of source now need to specify "USES=cmake:insource". I tried to only set insource where explictely needed. PR: 232038 Exp-run by: antoine Notes: svn path=/head/; revision=488341
* biology/libsbml: Fix build with Clang 6Tobias Kortkamp2018-08-251-9/+2
| | | | | | | | | | | | | | | | In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/Model.cpp:41: In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBMLDocument.h:298: In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBMLTransforms.h:48: In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/FunctionDefinition.h:129: In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBO.h:207: /usr/include/c++/v1/map:629:15: error: object of type 'std::__1::pair<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>' cannot be assigned because its copy assignment operator is implicitly deleted {__nc = __v.__cc; return *this;} ^ http://beefy11.nyi.freebsd.org/data/head-i386-default/p477696_s338122/logs/errors/libsbml-5.17.0.log Notes: svn path=/head/; revision=477994
* Mark as broken with clang6 after r473289.Mark Linimon2018-08-241-1/+9
| | | | Notes: svn path=/head/; revision=477936
* - Update to 5.17.0Wen Heping2018-06-253-4/+5
| | | | Notes: svn path=/head/; revision=473289
* - Update to 5.16.0Wen Heping2018-01-013-4/+9
| | | | Notes: svn path=/head/; revision=457754
* Switch from swig 2.0 to swig 3.0Baptiste Daroussin2017-12-201-2/+4
| | | | Notes: svn path=/head/; revision=456845
* Convert Python ports to FLAVORS.Mathieu Arnold2017-11-301-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Ports using USE_PYTHON=distutils are now flavored. They will automatically get flavors (py27, py34, py35, py36) depending on what versions they support. There is also a USE_PYTHON=flavors for ports that do not use distutils but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if using distutils but flavors are not wanted. A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been added to cope with Python ports that did not have the Python PKGNAMEPREFIX but are flavored. USES=python now also exports a PY_FLAVOR variable that contains the current python flavor. It can be used in dependency lines when the port itself is not python flavored. For example, deskutils/calibre. By default, all the flavors are generated. To only generate flavors for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf. In all the ports with Python dependencies, the *_DEPENDS entries MUST end with the flavor so that the framework knows which to build/use. This is done by appending '@${PY_FLAVOR}' after the origin (or @${FLAVOR} if in a Python module with Python flavors, as the content will be the same). For example: RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} PR: 223071 Reviewed by: portmgr, python Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D12464 Notes: svn path=/head/; revision=455210
* - Update to 5.15.0Wen Heping2017-05-183-3/+14
| | | | Notes: svn path=/head/; revision=441126
* Cleanup no longer needed CHMOD usage after r424898.Mathieu Arnold2016-11-021-3/+2
| | | | | | | | | | PR: 213743 Submitted by: mat Exp-run by: antoine Sponsored by: Absolight Notes: svn path=/head/; revision=425174
* Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:Mikhail Teterin2016-04-163-4/+5
| | | | | | | | | https://groups.google.com/forum/#!topic/sbml-discuss/OEq_49c_X78 Notified by: portscout Notes: svn path=/head/; revision=413410
* Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.Mathieu Arnold2016-04-011-2/+2
| | | | | | | | With hat: portmgr Sponsored by: Absolight Notes: svn path=/head/; revision=412344
* - Update to 5.12.0Wen Heping2016-03-273-5/+7
| | | | Notes: svn path=/head/; revision=411978
* - Add LICENSE_FILEDmitry Marakasov2015-10-141-1/+2
| | | | | | | - Switch to options helpers Notes: svn path=/head/; revision=399316
* Switch to USES=iconv:build.Raphael Kubo da Costa2015-08-251-1/+2
| | | | | | | | The port does not use iconv on its own, the only dependency comes via libxml2, which has one header that includes iconv.h. Notes: svn path=/head/; revision=395248
* - Update to 5.11.4Wen Heping2015-05-123-4/+10
| | | | Notes: svn path=/head/; revision=386129
* - Convert USE_PYTHON -> USES leftovers missed in the previous commitsMarcus von Appen2015-01-041-1/+1
| | | | | | | | Spotted by: antoine With hat: python Notes: svn path=/head/; revision=376179
* - Update to 5.11.0Wen Heping2014-12-303-5/+28
| | | | | | | | PR: 196377 Submitted by: koue@chaosophia.net Notes: svn path=/head/; revision=375831
* Cleanup plistBaptiste Daroussin2014-10-201-34/+0
| | | | Notes: svn path=/head/; revision=371237
* - Update to 5.10.2Wen Heping2014-08-104-270/+232
| | | | | | | | PR: 192198 Submitted by: tkato432@yahoo.com Notes: svn path=/head/; revision=364504
* Convert the Python framework bits to USES=python.Marcus von Appen2014-08-091-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Please use USES=python instead of USE_PYTHON. USE_PYTHON=yes becomes USES=python USE_PYTHON=2.7+ becomes USES=python:2.7+ USE_PYTHON_BUILD=3.3 becomes USES=python:3.3,build ... A new PYTHON_FEATURES variable was added, which enables certain features for a port and replaces some knobs at the same time; PYTHON_FEATURES=distutils replaces USE_PYDISTUTILS PYTHON_FEATURES=autoplist replaces PYDISTUTILS_AUTOPLIST PYTHON_FEATURES=py3kplist replaces PYTHON_PY3K_PLIST_HACK PYTHON_FEATURES=noegginfo replaces PYDISTUTILS_NOEGGINFO PYTHON_FEATURES=concurrent replaces PYTHON_CONCURRENT_INSTALL PYTHON_FEATURES=pythonprefix replaces USE_PYTHON_PREFIX Some knobs have been deprecated and are to be removed in the near future: PYTHON_MASTER_SITES - use MASTER_SITE_PYTHON instead PYTHON_PKGNAMESUFFIX - use PYTHON_PKGNAMEPREFIX instead PYDISTUTILS_INSTALLNOSINGLE - deprecated without replacement Some knobs have been removed completely: PYTHON_MASTER_SITE_SUBDIR PYTHON_DISTNAME PYTHON_WRKSRC Several variables specific to the Python framework are no longer passed to the build environment to avoid polluting dependency builds. PYTHON_VERSION is not passed to .MAKEFLAGS anymore PYTHON_DEFAULT_VERSION, PYTHON_DEFAULT_PORTVERSION and PYTHONBASE are not passed to the make environment anymore The conversion required a couple of ports to be updated to fit the changes and new requirements. Those included "bsd.python.mk" directly or contained checks in places, for which the USES framework would fail to provide correct values. Python modules directly using the upstream Python package (such as py-tkinter or py-sqlite3) were updated to avoid using the now unnecessary and remmoved knobs from "bsd.python.mk". Phabric: D399 exp-run: 167368 192357 PR: 167368 192357 Reviewed by: antoine, wg Exp-run award: antoine With hat: python@ Approved by: portmgr Notes: svn path=/head/; revision=364450
* - Update to 5.10.0Wen Heping2014-05-133-6/+39
| | | | Notes: svn path=/head/; revision=353921
* - Update to 5.9.0 [1]Wen Heping2014-05-133-40/+263
| | | | | | | | | | | | - Stage support [1] - Add LICENSE [1] - Reset maintainer to port@ PR: 188554 [1] Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com> [1] Notes: svn path=/head/; revision=353913
* The FreeBSD x11@ and graphics team proudly presentsNiclas Zeising2014-04-161-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | a zeising, kwm production, with help from dumbbell, bdrewery: NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE This update switches over to use the new xorg stack by default on FreeBSD 9 and 10 stable, on osversions where vt(9) is available. It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in /etc/make.conf . FreeBSD 8-STABLE and released versions of FreeBSD still use the old version. A package repository with binary packages for new xorg will be available soon. This patch also contains updates of libxcb and related ports, pixman, as well as some drivers and utilities. Bump portrevisions for xf86-* ports, as well as virtualbox-ose-additions due to xserver version change. Apart from these updates, the way shared libraries are handled has been changed for all xorg ports, as well as libxml2 and freetype, which means ltverhack is gone and as a consequence shared libraries have been bumped. The plan is that this change will make library bumps less likely in the future. All affected ports have had their portrevisions bumped as a consequence of this. Fix some issues where WITH_NEW_XORG weren't detected properly on CURRENT. Update instructions, hardware support, and more notes can be found on https://wiki.freebsd.org/Graphics Thanks to: all testers, bdrewery and the FreeBSD x11@ team exp-run by: bdrewery [1] PR: ports/187602 [1] Approved by: portmgr (bdrewery), core (jhb) Notes: svn path=/head/; revision=351411
* Convert b* to USES=zipBaptiste Daroussin2014-03-071-2/+1
| | | | Notes: svn path=/head/; revision=347402
* Reduce over inclusion of bsd.port.mkBaptiste Daroussin2014-01-151-2/+1
| | | | Notes: svn path=/head/; revision=339844
* In preparation for making libtool generate libraries with a sane name, fix allBaptiste Daroussin2013-12-111-1/+1
| | | | | | | LIB_DEPENDS in biology Notes: svn path=/head/; revision=336171
* - Fix build on headWen Heping2013-12-011-0/+1
| | | | Notes: svn path=/head/; revision=335360
* - Switch to build with lang/ruby19Thomas Abthorpe2013-10-101-1/+1
| | | | | | | | | - No PORTREVISION bump, option is off by default With hat: portmgr Notes: svn path=/head/; revision=330025
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-0/+1
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* - adoption of optionsNGJason Helfman2013-03-181-11/+8
| | | | | | | | | | - trim historical header - tighten COMMENT Approved by: portmgr (miwi) Notes: svn path=/head/; revision=314530
* - Get Rid MD5 supportMartin Wilke2011-03-191-1/+0
| | | | Notes: svn path=/head/; revision=271305
* - Update to 4.2.0Wen Heping2010-10-083-5/+6
| | | | Notes: svn path=/head/; revision=262588
* - Update to 4.1.0Wen Heping2010-09-163-5/+28
| | | | Notes: svn path=/head/; revision=261259
* - Update to 4.0.1Wen Heping2010-05-242-4/+4
| | | | Notes: svn path=/head/; revision=254954
* - Mark MAKE_JOBS_UNSAFEPav Lucistnik2009-11-201-0/+1
| | | | | | | Reported by: pointyhat Notes: svn path=/head/; revision=244567
* - Update to 4.0.0Wen Heping2009-09-234-13/+23
| | | | | | | | | | | | - Update my mail address to FreeBSD PR: ports/137652 Submitted by: wenheping@gmail.com(myself) Approved by: miwi(mentor) Feature safe: yes Notes: svn path=/head/; revision=241933
* - Switch SourceForge ports to the new File Release System: categories ↵Dmitry Marakasov2009-08-221-2/+1
| | | | | | | starting with B,C Notes: svn path=/head/; revision=240067
* LibSBML is an open-source programming library to help you read, write,Martin Wilke2009-05-285-0/+342
manipulate, translate, and validate SBML files and data streams. It is not an application itself (though it does come with example programs), but rather a library you can embed in your own applications. LibSBML understands all Levels and Versions of SBML, as well as the SBML Layout proposal by Gauges, Rost, Sahle and Wegner. It's written in ISO C and C++ but can be used from all the languages listed in the right-hand box. WWW: http://www.sbml.org/ PR: ports/135022 Submitted by: Wen Heping <wenheping at gmail.com> Notes: svn path=/head/; revision=234730
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