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* - Fix trailing whitespace in pkg-descrs, categories [a-f]*Dmitry Marakasov2016-05-191-4/+4
| | | | | | | Approved by: portmgr blanket Notes: svn path=/head/; revision=415498
* - Update to 4.9aDmitry Marakasov2016-05-162-4/+7
| | | | | | | | | | - While here, simplify WRKSRC and use options helpers PR: 209535 Submitted by: jrm@ftfl.ca (maintainer) Notes: svn path=/head/; revision=415338
* Update biology/paml to 4.8a and unbreak.Brad Davis2015-04-102-7/+5
| | | | | | | | | PR: 199264 Submitted by: Joseph Mingrone <jrm@ftfl.ca> Approved by: bdrewery (mentor) Notes: svn path=/head/; revision=383736
* Mark as broken unfetchable portsBaptiste Daroussin2015-04-051-0/+2
| | | | Notes: svn path=/head/; revision=383309
* - Pass maintainership to submitterWen Heping2015-01-191-1/+1
| | | | | | | | PR: 196859 Submitted by: Joseph Mingrone<jrm@ftfl.ca> Notes: svn path=/head/; revision=377397
* Cleanup plistBaptiste Daroussin2014-10-201-1/+0
| | | | Notes: svn path=/head/; revision=371237
* Convert a bunch of EXTRACT_SUFX=... into USES=tar:...Adam Weinberger2014-07-291-2/+1
| | | | | | | Approved by: portmgr (not really, but touches unstaged ports) Notes: svn path=/head/; revision=363374
* - Update to 4.8Wen Heping2014-04-053-8/+8
| | | | | | | - Reset maintainer to ports@ Notes: svn path=/head/; revision=350214
* Support stagingEmanuel Haupt2014-03-141-9/+3
| | | | Notes: svn path=/head/; revision=348221
* - Convert USE_GMAKE to USESMartin Wilke2014-03-131-1/+1
| | | | Notes: svn path=/head/; revision=348042
* Remove trailing whitespaces from category biologyEmanuel Haupt2014-02-211-1/+1
| | | | Notes: svn path=/head/; revision=345397
* According to the Porter's Handbook (5.12.2.3.) default options must be added toEmanuel Haupt2014-02-101-0/+2
| | | | | | | | | | | | | | OPTIONS_DEFINE. This policy has been implemented only recently that's why we have many ports violating this policy. This patch adds the default options specified in the Porter's Handbook to OPTIONS_DEFINE where they are being used. Ports maintained by gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded. Approved by: portmgr (bapt) Notes: svn path=/head/; revision=343634
* Fix properties on pkg-plistBaptiste Daroussin2014-01-211-1/+0
| | | | Notes: svn path=/head/; revision=340671
* Convert biology to MDOCS and MEXAMPLESAdam Weinberger2014-01-031-1/+4
| | | | Notes: svn path=/head/; revision=338550
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-0/+1
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* - Trim Makefile headersWen Heping2013-06-011-5/+1
| | | | Notes: svn path=/head/; revision=319570
* - Get Rid MD5 supportMartin Wilke2011-03-191-1/+0
| | | | Notes: svn path=/head/; revision=271305
* - Update to 4.4cWen Heping2010-09-082-4/+4
| | | | Notes: svn path=/head/; revision=260724
* - Update to 4.4aWen Heping2010-04-202-7/+7
| | | | | | | - Update my mail address to FreeBSD Notes: svn path=/head/; revision=252949
* - Update to 4.3Martin Wilke2009-08-132-6/+6
| | | | | | | | PR: 137625 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer) Notes: svn path=/head/; revision=239469
* - Update to 4.2bMartin Wilke2009-03-022-6/+6
| | | | | | | | PR: 132249 Submitted by: Wen Heping <wenheping@gmail.com> Notes: svn path=/head/; revision=229355
* - Update to 4.2Martin Wilke2008-12-252-4/+4
| | | | | | | | PR: 129895 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer) Notes: svn path=/head/; revision=224766
* - Update to 4.1Martin Wilke2008-09-303-8/+13
| | | | | | | | | | - Pass maintainership to submitter PR: 127683 Submitted by: Wen heping <wenheping@gmail.com> Notes: svn path=/head/; revision=221025
* Reset dbader@eece.unm.edu due to maintainer-timeouts.Mark Linimon2007-03-111-1/+1
| | | | | | | Hat: portmgr Notes: svn path=/head/; revision=187091
* - Update to 3.15Sergey Matveychuk2006-05-202-4/+4
| | | | | | | | | PR: ports/96941 Submitted by: Paul Schmehl <pauls@utdallas.edu> Approved by: maintainer timeout Notes: svn path=/head/; revision=162900
* Update to 3.14bMarcus Alves Grando2005-11-102-9/+11
| | | | | | | | | | | | | Update MASTER_SITES Add SHA256 Remove extra TABS PR: 88007 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: maintainer timeout, 14 days Notes: svn path=/head/; revision=147771
* Update to 3.14Kevin Lo2004-11-063-5/+4
| | | | | | | | PR: ports/72422 Submitted by: Choe, Cheng-Dae <whitekid@gmail.com> Notes: svn path=/head/; revision=120935
* SIZEify (maintainer timeout)Trevor Johnson2004-03-311-0/+1
| | | | Notes: svn path=/head/; revision=105747
* Cosmetic fix: use %%DOCSDIR%% macro.Sergey A. Osokin2003-10-221-2/+2
| | | | | | | | | | No functionally changes. Submitted by: Oleg Karachevtsev <ok@etrust.ru> A part of PR: 57992 Notes: svn path=/head/; revision=91882
* * Update to 3.13.Christian Weisgerber2003-02-145-20/+7
| | | | | | | | | | PR: 48255 Submitted by: David A. Bader <dbader@eece.unm.edu> * Also honor CC/CFLAGS. Notes: svn path=/head/; revision=75540
* - Update to version 3.1Johann Visagie2001-08-294-6/+18
| | | | | | | | PR: 30176 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER) Notes: svn path=/head/; revision=47087
* Update to version 3.04Johann Visagie2001-07-033-5/+5
| | | | | | | | PR: 28614 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER) Notes: svn path=/head/; revision=44678
* update to 3.03Michael Haro2001-04-024-27/+5
| | | | | | | | PR: 26094 Submitted by: maintainer Notes: svn path=/head/; revision=40710
* Add paml version 3.01.Steve Price2000-07-107-0/+89
A set of utilities for performing Phylogenetic Analysis by Maximum Likelihood (PAML). PR: 19753 Submitted by: David A. Bader <dbader@cielo.eece.unm.edu> Notes: svn path=/head/; revision=30407
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