ports - FreeBSD ports tree

	Commit message (Collapse)	Author	Age	Files	Lines
*	Convert biology to MDOCS and MEXAMPLES	Adam Weinberger	2014-01-03	1	-1/+1
\| \| \| \|	Notes: svn path=/head/; revision=338550
*	Add NO_STAGE all over the place in preparation for the staging support (cat: ↵	Baptiste Daroussin	2013-09-20	1	-0/+1
\| \| \| \| \| \| \|	biology) Notes: svn path=/head/; revision=327709
*	Remove unneeded escaping	Bryan Drewery	2013-04-26	1	-6/+2
\| \| \| \|	Notes: svn path=/head/; revision=316622
*	- Get Rid MD5 support	Martin Wilke	2011-03-19	1	-1/+0
\| \| \| \|	Notes: svn path=/head/; revision=271305
*	Teach the building cluster that these ports are not to be build	Edwin Groothuis	2008-05-25	1	-0/+3
\| \| \| \|	Notes: svn path=/head/; revision=213667
*	New port: biology/consed viewing and editing workbench for sequence	Edwin Groothuis	2008-05-24	3	-0/+21
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	assembly Consed is a tool for viewing, editing, and finishing sequence assemblies. The port is constituted of 4 parts: biology/phred: base caller with quality evaluation biology/phrap: sequence assembler for shotgun sequencing biology/consed: workbench biology/phd2fasta: small utility All these can be used separately; however, most function of consed depends on the others. Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to get the softwares. Phred (including phd2fasta) and phrap are emailed, and consed can be downloaded to a restricted IP address. For commercial users, the licensing fee is ca. $10,000 at the time of writing. PR: ports/118548 Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp> Notes: svn path=/head/; revision=213594
*	New port: biology/consed viewing and editing workbench for sequence	Edwin Groothuis	2008-05-24	1	-0/+48
	assembly Consed is a tool for viewing, editing, and finishing sequence assemblies. The port is constituted of 4 parts: biology/phred: base caller with quality evaluation biology/phrap: sequence assembler for shotgun sequencing biology/consed: workbench biology/phd2fasta: small utility All these can be used separately; however, most function of consed depends on the others. Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to get the softwares. Phred (including phd2fasta) and phrap are emailed, and consed can be downloaded to a restricted IP address. For commercial users, the licensing fee is ca. $10,000 at the time of writing. PR: ports/118548 Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp> Notes: svn path=/head/; revision=213592