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* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* Convert to UCL & cleanup pkg-message (categories a-c)Mathieu Arnold2019-08-131-2/+6
| | | | Notes: svn path=/head/; revision=508834
* Add DOCS options to ports that should have one.Mathieu Arnold2018-09-101-0/+2
| | | | | | | | | | | Also various fixes related to said option. PR: 230864 Submitted by: mat exp-runs by: antoine Notes: svn path=/head/; revision=479406
* update ports:Kurt Jaeger2014-08-232-21/+13
| | | | | | | | | | | | | | | biology/phrab biology/phred biology/consed Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to obtain the tarballs. PR: 191336 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer) Notes: svn path=/head/; revision=365765
* Replace maintainer's email address with one that seems to workAntoine Brodin2014-05-101-1/+1
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=353593
* Convert biology to MDOCS and MEXAMPLESAdam Weinberger2014-01-031-1/+1
| | | | Notes: svn path=/head/; revision=338550
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-5/+2
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* - Get Rid MD5 supportMartin Wilke2011-03-191-1/+0
| | | | Notes: svn path=/head/; revision=271305
* Teach the building cluster that these ports are not to be buildEdwin Groothuis2008-05-251-0/+3
| | | | Notes: svn path=/head/; revision=213667
* New port: biology/consed viewing and editing workbench for sequenceEdwin Groothuis2008-05-244-0/+107
assembly Consed is a tool for viewing, editing, and finishing sequence assemblies. The port is constituted of 4 parts: biology/phred: base caller with quality evaluation biology/phrap: sequence assembler for shotgun sequencing biology/consed: workbench biology/phd2fasta: small utility All these can be used separately; however, most function of consed depends on the others. Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to get the softwares. Phred (including phd2fasta) and phrap are emailed, and consed can be downloaded to a restricted IP address. For commercial users, the licensing fee is ca. $10,000 at the time of writing. PR: ports/118548 Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp> Notes: svn path=/head/; revision=213596
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