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* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-261-1/+1
| | | | | | | | | | | | | | | | | | as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330 Notes: svn path=/head/; revision=507372
* Fix Qt5 symbol version scripts to put the catch-all clause first. WhenTijl Coosemans2019-01-161-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | a symbol matches multiple clauses the last one takes precedence. If the catch-all is last it captures everything. In the case of Qt5 libraries this caused all symbols to have a Qt_5 label while some should have Qt_5_PRIVATE_API. This only affects lld because GNU ld always gives the catch-all lowest priority. Older versions of Qt5Webengine exported some memory allocation symbols from the bundled Chromium. Version 5.9 stopped exporting these [1] but the symbols were kept as weak wrappers for the standard allocation functions to maintain binary compatibility. [2][3] The problem is that the call to the standard function in these weak wrappers is only resolved to the standard function if there's a call to this standard function in other parts of Qt5Webengine, because only then is there a non-weak symbol that takes precedence over the weak one. If there's no such non-weak symbol the call in the weak wrapper resolves to the weak wrapper itself creating an infinite call loop that overflows the stack and causes a crash. Some of the allocation functions are variants of C++ new and delete and it probably depends on the compiler whether these variants are used in other parts of Qt5Webengine. Remove the weak wrappers (make them Linux specific). This isn't binary compatible but we are already breaking that with the changes to the symbol versions. [1] https://github.com/qt/qtwebengine/commit/5c2cbfccf9aafb547b0b30914c4056abd25942a4 [2] https://github.com/qt/qtwebengine/commit/2ed5054e3a800fa97c2c9e920ba1e6ea4b6ef2a5 [3] https://github.com/qt/qtwebengine/commit/009f5ebb4bd6e50188671e0815a5dae6afe39db5 Bump all ports that depend on Qt5. PR: 234070 Exp-run by: antoine Approved by: kde (adridg) Notes: svn path=/head/; revision=490472
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-12-121-0/+1
| | | | | | | | | | | | | | | | | | defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, as a double check, everything INDEX-11 showed depending on lang/gcc7. PR: 231590 Notes: svn path=/head/; revision=487272
* biology/py-orange3-bioinformatics: Update 3.2.0 -> 3.2.2Yuri Victorovich2018-10-142-4/+4
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=482019
* biology/py-orange3-bioinformatics: Update 3.1.1 -> 3.2.0Yuri Victorovich2018-08-092-4/+4
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=476712
* biology/py-orange3-bioinformatics: Update 3.1.0 -> 3.1.1Yuri Victorovich2018-07-122-4/+4
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=474534
* New port: biology/py-orange3-bioinformatics: Orange add-on providing common ↵Yuri Victorovich2018-06-143-0/+40
functionality for bioinformatics Notes: svn path=/head/; revision=472358