aboutsummaryrefslogtreecommitdiff
path: root/biology/tinker
Commit message (Collapse)AuthorAgeFilesLines
* biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/Yuri Victorovich2018-10-0712-1003/+0
| | | | | | | | | | | | | Port changes: * Take maintainership * Implement the 'benchmarks' target, and stop installing benchmarks * Add USES=gmake * Update license * Change MASTER_SITES and WWW to https * Silence some commands Notes: svn path=/head/; revision=481406
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-07-291-1/+1
| | | | | | | | | | | | | | | | | in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which has now moved from GCC 6 to GCC 7 by default. This includes ports - featuring USE_GCC=yes or USE_GCC=any, - featuring USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and those - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x, c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib. PR: 222542 Notes: svn path=/head/; revision=475857
* Bump PORTREVISIONs of all users of math/mpc that we just updated toGerald Pfeifer2018-03-101-1/+1
| | | | | | | version 1.1.0 (via revision 464079). Notes: svn path=/head/; revision=464084
* Fix the context of some patches so that they apply with stricter patch(1)Antoine Brodin2017-11-092-6/+6
| | | | | | | | PR: 223545 With hat: portmgr Notes: svn path=/head/; revision=453869
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2017-09-101-1/+1
| | | | | | | | | | | | | | | | | (via Mk/bsd.default-versions.mk and lang/gcc) which has moved from GCC 5.4 to GCC 6.4 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang, c++14-lang, c++0x, c11, or gcc-c++11-lib. PR: 219275 Notes: svn path=/head/; revision=449591
* Bump PORTREVISIONs for ports depending on the canonical version of GCC andGerald Pfeifer2017-04-011-1/+1
| | | | | | | | | | | | | | | | | lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some circumstances such as versions of FreeBSD or platforms). This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using using Mk/bsd.octave.mk which in turn has USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang, c++11-lang, c++0x, c11, or gcc-c++11-lib. PR: 216707 Notes: svn path=/head/; revision=437439
* Bump PORTREVISIONS for ports depending on the canonical version of GCC andGerald Pfeifer2016-12-071-0/+1
| | | | | | | | | | | | | | | | | | lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some circumstances such as versions of FreeBSD or platforms), part II. The first part covered ports with USE_GCC=yes, USE_GCC=any, or one of gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang, c++11-lang, c++0x, c11 requested via USES=compiler. This adds ports with USES=fortran and ports using Mk/bsd.octave.mk which in turn has USES=fortran. PR: 214965 Reported by: thierry Notes: svn path=/head/; revision=428057
* Cleanup no longer needed CHMOD usage after r424898.Mathieu Arnold2016-11-021-3/+0
| | | | | | | | | | PR: 213743 Submitted by: mat Exp-run by: antoine Sponsored by: Absolight Notes: svn path=/head/; revision=425174
* ${RM} already has -f.Mathieu Arnold2016-10-211-1/+1
| | | | | | | | | | PR: 213570 Submitted by: mat Exp-run by: antoine Sponsored by: Absolight Notes: svn path=/head/; revision=424411
* Convert ports to use the options helpers in categories [abc]*, and minor fixes.Mathieu Arnold2015-08-191-4/+2
| | | | | | | | Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D3412? Notes: svn path=/head/; revision=394778
* Remove $FreeBSD$ from patches files in categories a-j.Mathieu Arnold2015-05-221-3/+0
| | | | | | | | With hat: portmgr Sponsored by: Absolight Notes: svn path=/head/; revision=387021
* - Update to 7.1.3Wen Heping2015-05-184-20/+22
| | | | Notes: svn path=/head/; revision=386651
* Update from 7.1.1 to 7.1.2.Mikhail Teterin2015-03-112-3/+3
| | | | Notes: svn path=/head/; revision=380981
* Unbreak by updating from 7.0.1 to 7.1.1. Hopefully, the authors willMikhail Teterin2015-03-082-6/+4
| | | | | | | | | | stop rerolling releases (and breaking downstream checksums) now. While here, allow parallel builds (seems to work again now) and stop extraction of unused subdirectories. Notes: svn path=/head/; revision=380785
* Mark BROKEN: Checksum and size mismatchAntoine Brodin2015-01-311-0/+1
| | | | | | | Reported by: pkg-fallout Notes: svn path=/head/; revision=378195
* biology/tinker: 6.2.6 -> 7.0.1Kurt Jaeger2015-01-046-65/+94
| | | | | | | | PR: 196376 Submitted by: Nikola Kolev <koue@chaosophia.net> Notes: svn path=/head/; revision=376238
* Cleanup plistBaptiste Daroussin2014-10-201-6/+0
| | | | Notes: svn path=/head/; revision=371237
* Update the default version of GCC in the Ports Collection from GCC 4.7.4Gerald Pfeifer2014-09-101-1/+1
| | | | | | | | | | | | | to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit) Notes: svn path=/head/; revision=367888
* - Un-break fetch stage: the name scheme of the source tarballs has changedThomas Zander2014-04-225-12/+34
| | | | | | | | | | | | | | | | - Add LICENSE* - Remove conflict with hunspell: - Rename the 'analyze' binary to 'analyze_t' - put a note in pkg-message.in - Pet portlint PR: ports/187569 Submitted by: Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp> Approved by: thierry (mentor) MFH: 2014Q2 Notes: svn path=/head/; revision=351875
* Update the default version of GCC used in the Ports Collection fromGerald Pfeifer2014-03-101-1/+1
| | | | | | | | | | | | | | GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk. Part II, Bump PORTREVISIONs. PR: 182136 Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports) Tested by: bdrewery (two -exp runs) Notes: svn path=/head/; revision=347809
* - biology/tinker: USES=fortran, staging.Tijl Coosemans2013-12-182-22/+20
| | | | | | | | - Add CONFLICTS_INSTALL between hunspell and tinker. Both install bin/analyze. Notes: svn path=/head/; revision=336854
* Update to libmpc version 1.0.1 which brings the following fixes:Gerald Pfeifer2013-10-261-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery) Notes: svn path=/head/; revision=331644
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-0/+1
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* biology/tinker: Regenerate distinfo to unbreak fetchJohn Marino2013-08-182-2/+3
| | | | | | | | | | | | Apparently the distfile was rerolled. The sizes of the file are only a few bytes apart. Since the master site never changed, it's reasonable just to regenerate the distinfo and bump the PORTREVISION. PR: 180664 Approved by: bapt/culot (mentors, implicit) Notes: svn path=/head/; revision=324901
* - Remove MAKE_JOBS_SAFE variableAlex Kozlov2013-08-141-1/+0
| | | | | | | Approved by: portmgr (bdrewery) Notes: svn path=/head/; revision=324744
* - Update to 6.2.06Martin Wilke2013-07-154-13/+23
| | | | | | | | PR: 180518 Submitted by: Ports Fury Notes: svn path=/head/; revision=323046
* - Update to 6.2.05Martin Wilke2013-05-292-5/+4
| | | | | | | | PR: 179061 Submitted by: Ports Fury Notes: svn path=/head/; revision=319343
* - Update to 6.2.04Martin Wilke2013-05-212-3/+3
| | | | | | | | PR: 178590 Submitted by: Ports Fury Notes: svn path=/head/; revision=318658
* - Update to 6.2.02Martin Wilke2013-04-293-3/+4
| | | | | | | | PR: 178031 Submitted by: Ports Fury Notes: svn path=/head/; revision=316821
* - Update to 6.2.01Martin Wilke2013-03-245-168/+164
| | | | | | | | PR: 177261 Submitted by: ports fury Notes: svn path=/head/; revision=315140
* - Update to version 6.1.01Armin Pirkovitsch2012-12-0115-753/+788
| | | | | | | | | | | | | | - Add MAKE_JOBS_SAFE - Convert to optionsng - Trim Makefile header PR: ports/171971 Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com> Approved by: beat (mentor) Feature safe: yes Notes: svn path=/head/; revision=308054
* - ${FFLAGS} might contain commasPav Lucistnik2011-10-101-1/+1
| | | | | | | Reported by: pointyhat Notes: svn path=/head/; revision=283344
* - Update to 5.1.09Martin Wilke2011-01-317-470/+508
| | | | | | | | | PR: 154359 Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru> Feature safe: yes Notes: svn path=/head/; revision=268481
* - Unbreak by removing some old and adding some new master sitesRene Ladan2010-10-301-5/+4
| | | | | | | | | - Bump PORTREVISION PR: ports/151733 Submitted by: Chris Petrik [c.petrik.sosa gmail.com] Notes: svn path=/head/; revision=263822
* Mark BROKEN: does not fetch.Erwin Lansing2010-09-301-0/+1
| | | | Notes: svn path=/head/; revision=262150
* Bump PORTREVISION for everything that sets USE_FORTRAN=yes which nowGerald Pfeifer2009-09-131-1/+1
| | | | | | | | | implies lang/gcc44 up from lang/gcc43. Approved by: portmgr Notes: svn path=/head/; revision=241308
* Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.Gerald Pfeifer2009-01-071-1/+1
| | | | Notes: svn path=/head/; revision=225403
* - Remove unneeded dependency from gtk12/gtk20 [1]Martin Wilke2008-04-191-4/+3
| | | | | | | | | | | | | | | | | | - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG - Remove X11BASE support in favor of LOCALBASE or PREFIX - Use USE_LDCONFIG instead of INSTALLS_SHLIB - Remove unneeded USE_GCC 3.4+ Thanks to all Helpers: Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr, ehaupt, nox, itetcu, flz, pav PR: 116263 Tested on: pointyhat Approved by: portmgr (pav) Notes: svn path=/head/; revision=211584
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.Maho Nakata2007-07-121-4/+2
| | | | Notes: svn path=/head/; revision=195449
* swap MASTER_SITES to improve fetchiness on pointyhat which is blocked from ↵Edwin Groothuis2007-05-251-4/+2
| | | | | | | dasher.wustl.edu Notes: svn path=/head/; revision=191699
* BROKEN: UnfetchableKris Kennaway2007-05-251-0/+2
| | | | Notes: svn path=/head/; revision=191691
* - UnbreakMartin Wilke2007-04-211-3/+3
| | | | | | | | | | - Add backup MASTER_SITES PR: 111963 Submitted by: Jason Harris <jharris@widomaker.com> Notes: svn path=/head/; revision=190551
* BROKEN: UnfetchableKris Kennaway2007-04-201-0/+2
| | | | Notes: svn path=/head/; revision=190429
* - MASTER_SITE is back, remove BROKENGabor Kovesdan2007-03-161-2/+0
| | | | | | | | PR: ports/109954 Submitted by: Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp> Notes: svn path=/head/; revision=187549
* BROKEN: UnfetchableKris Kennaway2007-02-271-0/+2
| | | | Notes: svn path=/head/; revision=186074
* * Migrate to gfortran.Maho Nakata2007-01-122-2/+7
| | | | | | | * Bump port revision. Notes: svn path=/head/; revision=182197
* Remove USE_REINPLACE from all categories starting with BEdwin Groothuis2006-05-031-1/+0
| | | | Notes: svn path=/head/; revision=161307
* - Add SHA256Pav Lucistnik2005-11-241-0/+1
| | | | Notes: svn path=/head/; revision=149228
* Upgrade to latest revision to make fetchable again.Thierry Thomas2004-09-252-3/+3
| | | | | | | Approved by: portmgr (marcus) Notes: svn path=/head/; revision=118384
* - Unbreak by upgrading to 4.2;Thierry Thomas2004-08-194-444/+387
| | | | | | | | | | | - Use DIST_SUBDIR because tarball is not versioned; - Add sysdate to PORTVERSION to handle minor revisions; - Do some cleaning. Notes: svn path=/head/; revision=116727
generated by cgit v1.2.3 (git 2.25.1) at 2024-10-13 23:23:39 +0000