aboutsummaryrefslogtreecommitdiff
path: root/biology/treepuzzle
Commit message (Collapse)AuthorAgeFilesLines
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
|
* - Remove NO_STAGE as these have been tested to be safeBryan Drewery2013-09-251-1/+0
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=328226
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-5/+2
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* - Get Rid MD5 supportMartin Wilke2011-03-191-1/+0
| | | | Notes: svn path=/head/; revision=271305
* Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.Rong-En Fan2008-08-211-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Specifically, newer autoconf (> 2.13) has different semantic of the configure target. In short, one should use --build=CONFIGURE_TARGET instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning and the old semantic may be removed in later autoconf releases. To workaround this issue, many ports hack the CONFIGURE_TARGET variable so that it contains the ``--build='' prefix. To solve this issue, under the fact that some ports still have configure script generated by the old autoconf, we use runtime detection in the do-configure target so that the proper argument can be used. Changes to Mk/*: - Add runtime detection magic in bsd.port.mk - Remove CONFIGURE_TARGET hack in various bsd.*.mk - USE_GNOME=gnometarget is now an no-op Changes to individual ports, other than removing the CONFIGURE_TARGET hack: = pkg-plist changed (due to the ugly CONFIGURE_TARGET prefix in * executables) - comms/gnuradio - science/abinit - science/elmer-fem - science/elmer-matc - science/elmer-meshgen2d - science/elmerfront - science/elmerpost = use x86_64 as ARCH - devel/g-wrap = other changes - print/magicfilter GNU_CONFIGURE -> HAS_CONFIGURE since it's not generated by autoconf Total # of ports modified: 1,027 Total # of ports affected: ~7,000 (set GNU_CONFIGURE to yes) PR: 126524 (obsoletes 52917) Submitted by: rafan Tested on: two pointyhat 7-amd64 exp runs (by pav) Approved by: portmgr (pav) Notes: svn path=/head/; revision=218938
* SHA256ifyEdwin Groothuis2006-01-221-0/+1
| | | | | | | Approved by: krion@ Notes: svn path=/head/; revision=154141
* At Kris's request, back out the MACHINE_ARCH spelling correction untilDavid E. O'Brien2005-04-121-1/+1
| | | | | | | after 5.4-RELEASE. Notes: svn path=/head/; revision=133116
* Assist getting more ports working on AMD64 by obeying theDavid E. O'Brien2005-04-111-1/+1
| | | | | | | Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'. Notes: svn path=/head/; revision=132992
* - Update to 5.2Pav Lucistnik2004-07-302-3/+13
| | | | | | | | PR: ports/69799 Submitted by: Jan Lentfer <Jan.Lentfer@web.de> (maintainer) Notes: svn path=/head/; revision=115120
* SIZEify (maintainer timeout)Trevor Johnson2004-03-311-0/+1
| | | | Notes: svn path=/head/; revision=105747
* Use PLIST_FILES (bento-tested, marcus-reviewed).Trevor Johnson2004-02-062-1/+1
| | | | Notes: svn path=/head/; revision=100139
* De-pkg-comment.Akinori MUSHA2003-02-212-1/+1
| | | | Notes: svn path=/head/; revision=76030
* add treepuzzle 5.1Ying-Chieh Liao2002-11-205-0/+40
Maximum likelihood phylogeny reconstruction using quartets PR: 45241 Submitted by: Jan Lentfer <lentferj@neslonek.bio.tu-darmstadt.de> Notes: svn path=/head/; revision=70552