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* Remove WWW entries moved into port MakefilesStefan Eßer2022-09-071-2/+0
| | | | | | | | | | Commit b7f05445c00f has added WWW entries to port Makefiles based on WWW: lines in pkg-descr files. This commit removes the WWW: lines of moved-over URLs from these pkg-descr files. Approved by: portmgr (tcberner)
* Add WWW entries to port MakefilesStefan Eßer2022-09-071-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)
* biology/vcftools: Add CPE informationBernhard Froehlich2021-09-251-1/+3
| | | | Approved by: portmgr (blanket)
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
| | | | Reported by: lwhsu
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* biology/vcftools: Update to 0.1.16, a security releaseJason W. Bacon2018-08-042-4/+4
| | | | | | | | Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D16587 Notes: svn path=/head/; revision=476330
* Multiple ports:Jason W. Bacon2018-01-311-2/+1
| | | | | | | | | | | Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org Remove Created by comments for same user Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D14128 Notes: svn path=/head/; revision=460452
* biology/vcftools: Upgrade to latest release 0.1.15Jason W. Bacon2017-11-272-4/+4
| | | | | | | | Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D13276 Notes: svn path=/head/; revision=455000
* Assume "pkg-config zlib" works after 9.x reached EOLJan Beich2017-01-031-3/+0
| | | | | | | | | | Many ports passed ZLIB_CFLAGS="-I/usr/include" ZLIB_LIBS="-L/usr/lib -lz" which is unsafe at least with lang/gcc* that override some system headers and have newer libgcc_s.so that our old version in base may not be forward-compatible with. Notes: svn path=/head/; revision=430483
* Fixup USE_GITHUB usage.Mathieu Arnold2016-11-262-3/+3
| | | | | | | | | | It already sets DISTNAME to a very nice unique name, do not set it yourself. Sponsored by: Absolight Notes: svn path=/head/; revision=427136
* New port: biology/vcftools.Raphael Kubo da Costa2016-02-264-0/+58
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project. WWW: https://github.com/vcftools/vcftools PR: 206926 Submitted by: Jason Bacon <bacon4000@gmail.com> Notes: svn path=/head/; revision=409624
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