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* Change 4 ports from net/mpich2 to net/mpichYuri Victorovich2018-09-221-3/+5
* - Update to 1.63Wen Heping2018-09-222-4/+4
* Fix build on gcc-based archs by updating USES.Mark Linimon2018-09-221-1/+1
* Update to 1.5.2Sunpoet Po-Chuan Hsieh2018-09-212-6/+7
* New port: biology/py-loompy: Work with .loom files for single-cell RNA-seq dataYuri Victorovich2018-09-214-0/+44
* biology/py-cutadapt: Upgrade to 1.18Jason W. Bacon2018-09-203-50/+9
* biology/ngs-sdk: Update 2.9.1 -> 2.9.2Yuri Victorovich2018-09-193-5/+5
* Upgrade these ports to USES=compiler:c++11-lang to fix build on gcc-basedMark Linimon2018-09-181-1/+1
* More precisely specify USES=compiler to fix build on gcc-basedMark Linimon2018-09-183-3/+3
* biology/py-pysam: Update 0.15.0 -> 0.15.1Yuri Victorovich2018-09-172-4/+4
* Add DOCS options to ports that should have one.Mathieu Arnold2018-09-103-0/+6
* biology/seaview: Fix build with Clang 6Tobias Kortkamp2018-09-083-0/+65
* Update science/hdf5 to 1.10.2Sunpoet Po-Chuan Hsieh2018-09-051-1/+1
* Update to 1.31.0Jason E. Hale2018-09-0217-181/+201
* biology/stacks: Enable OpenMP (oversight in previous commit)Jason W. Bacon2018-09-011-2/+2
* biology/iqtree: Update to version 1.6.7Joseph Mingrone2018-08-272-5/+4
* biology/py-bx-python: Update 0.8.1 -> 0.8.2Yuri Victorovich2018-08-262-5/+5
* biology/unanimity: Upgrade to latest release, soften dep version requirementsJason W. Bacon2018-08-252-11/+10
* biology/protomol: Fix doubled USES overwriting the old valueTobias Kortkamp2018-08-251-3/+2
* biology/protomol: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+1
* biology/primer3: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+24
* biology/libsbml: Fix build with Clang 6Tobias Kortkamp2018-08-251-9/+2
* biology/avida: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+1
* biology/lamarc: Fix build with Clang 6Tobias Kortkamp2018-08-251-0/+2
* Mark as broken with clang6 after r473289.Mark Linimon2018-08-241-1/+9
* - Update to 1.72Wen Heping2018-08-242-5/+4
* Remove expired ports:Rene Ladan2018-08-166-104/+0
* biology/cytoscape: Fix licenseYuri Victorovich2018-08-122-3/+5
* Mark as broken on arm.Mark Linimon2018-08-121-0/+4
* devel/boost-*: update to 1.68.0Jan Beich2018-08-095-2/+5
* biology/py-orange3-bioinformatics: Update 3.1.1 -> 3.2.0Yuri Victorovich2018-08-092-4/+4
* biology/py-orange3-single-cell: Update 0.7.0 -> 0.8.0Yuri Victorovich2018-08-082-4/+4
* Regular sorting of categories Makefiles.Mathieu Arnold2018-08-081-1/+1
* New port: biology/py-orange3-single-cell: Orange add-on for gene expression o...Yuri Victorovich2018-08-074-0/+43
* biology/vcftools: Update to 0.1.16, a security releaseJason W. Bacon2018-08-042-4/+4
* biology/bcftools: update to 1.9Fernando Apesteguía2018-08-025-24/+41
* biology/samtools: update to 1.9Fernando Apesteguía2018-08-022-8/+7
* biology/htslib: update to 1.9Fernando Apesteguía2018-08-022-6/+8
* biology/py-pysam: Update 0.14.1 -> 0.15.0Yuri Victorovich2018-07-303-8/+5
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-07-2915-10/+15
* biology/linux-foldingathome: reset maintainer by requestEitan Adler2018-07-271-1/+1
* biology/seaview: Updatye version 4.6.5=>4.7Muhammad Moinur Rahman2018-07-222-4/+4
* biology/molden: Unbreak by updating the MASTER_SITES URLYuri Victorovich2018-07-201-2/+1
* Mark BROKEN: unfetchaableAntoine Brodin2018-07-201-0/+1
* biology/htslib: Update 1.6 -> 1.8Yuri Victorovich2018-07-164-10/+8
* Deprecate unmaintained ports under the NONE licenseAntoine Brodin2018-07-131-0/+3
* biology/molden: Unbreak by updating the MASTER_SITES URLYuri Victorovich2018-07-131-2/+1
* Mark BROKEN: unfetchableAntoine Brodin2018-07-131-0/+1
* New port: biology/exonerate: Generic tool for sequence alignmentYuri Victorovich2018-07-135-0/+67
* biology/py-orange3-bioinformatics: Update 3.1.0 -> 3.1.1Yuri Victorovich2018-07-122-4/+4
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