aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Collapse)AuthorAgeFilesLines
* Fix build on 4.xKirill Ponomarev2005-02-191-0/+4
| | | | | | | | PR: ports/77697 Submitted by: Sam Lawrance <boris at brooknet.com.au> Notes: svn path=/head/; revision=129257
* As previously announced, remove ports that have reached their expiry date,Kris Kennaway2005-02-187-455/+0
| | | | | | | and the handful of ports that depended on them. Notes: svn path=/head/; revision=129234
* Update to version 2.0.3Kirill Ponomarev2005-02-183-10/+13
| | | | | | | | PR: ports/77676 Submitted by: Sam Lawrance <boris at brooknet.com.au> Notes: svn path=/head/; revision=129170
* Readd mistakenly removed patch to honour CC/CFLAGS.Kirill Ponomarev2005-02-181-0/+43
| | | | Notes: svn path=/head/; revision=129169
* Update to version 1.40Kirill Ponomarev2005-02-183-47/+6
| | | | | | | | PR: ports/77675 Submitted by: Sam Lawrance <boris at brooknet.com.au> Notes: svn path=/head/; revision=129168
* Fix unfetchable tarball, it was renamed and relocated on originalKirill Ponomarev2005-02-182-4/+4
| | | | | | | | | | server. PR: ports/77674 Submitted by: Sam Lawrance <boris at brooknet.com.au> Notes: svn path=/head/; revision=129164
* - Add (or fix) CONFLICTS line. The ports install bin/digest.Sergey Matveychuk2005-02-111-0/+2
| | | | | | | Approved by: portmgr (krion) Notes: svn path=/head/; revision=128541
* update to 0.97Maho Nakata2005-02-074-338/+380
| | | | Notes: svn path=/head/; revision=128213
* With portmgr hat on, reset maintainership of this port. All of wjv'sMark Linimon2005-01-221-1/+1
| | | | | | | | other ports were reset a couple of months ago; this one appears to have been missed. Notes: svn path=/head/; revision=127073
* o update to 4.3Maho Nakata2005-01-202-7/+4
| | | | | | | | o unbreak o due to no fix for long period, drop maintainership to ports. Notes: svn path=/head/; revision=126887
* Update to 0.6.2.Akinori MUSHA2004-12-253-7/+26
| | | | Notes: svn path=/head/; revision=125141
* This port is scheduled to be removed on 2005-02-18 if it is stillKris Kennaway2004-12-182-0/+4
| | | | | | | broken at that time, and a fix has not been submitted to GNATS. Notes: svn path=/head/; revision=124429
* Update to version 2.0.8Kirill Ponomarev2004-12-183-10/+19
| | | | | | | | PR: ports/75106 Submitted by: Ports Fury Notes: svn path=/head/; revision=124402
* - Update to 2004.12.16Sergey Matveychuk2004-12-182-3/+3
| | | | | | | | PR: ports/75205 Submitted by: maintainer Notes: svn path=/head/; revision=124383
* Clean up wording of IGNORE output.Mark Linimon2004-12-171-1/+1
| | | | Notes: svn path=/head/; revision=124275
* Unquote the IGNORE string.Mark Linimon2004-12-171-1/+1
| | | | Notes: svn path=/head/; revision=124273
* With portmgr hat on, switch from BROKEN to ignore. It does indeed build.Mark Linimon2004-12-171-1/+1
| | | | Notes: svn path=/head/; revision=124259
* - Fix OPTIONS handlingPav Lucistnik2004-12-111-3/+1
| | | | | | | Pointy hat to: sem Notes: svn path=/head/; revision=123790
* Not a real update with the last patch.Sergey Matveychuk2004-12-112-4/+5
| | | | | | | The real update here. Notes: svn path=/head/; revision=123680
* - This update brings seaview to the latest release (dated 09.24.04Sergey Matveychuk2004-12-111-1/+1
| | | | | | | | | | | | | | in the FTP site). - While here add a modeline for vi, and fix a tab (cosmetic) - Make portlint happy. PR: ports/74897 Submitted by: maintainer Notes: svn path=/head/; revision=123679
* - Add some sites I found with Google, as old master site don't have thisPav Lucistnik2004-12-091-1/+4
| | | | | | | | | version anymore Reported by: pointyhat via krion Notes: svn path=/head/; revision=123561
* BROKEN: Broken distinfo fileKris Kennaway2004-12-041-0/+2
| | | | Notes: svn path=/head/; revision=123073
* Fix build on Python 2.4Hye-Shik Chang2004-12-021-0/+14
| | | | | | | Spotted by: kris Notes: svn path=/head/; revision=122961
* Update MASTER_SITES and WWW: lineKirill Ponomarev2004-11-262-2/+2
| | | | | | | | PR: ports/74421 Submitted by: Ports Fury Notes: svn path=/head/; revision=122522
* [new port] biology/embassySergey Matveychuk2004-11-265-0/+271
| | | | | | | | PR: ports/74330 Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar> Notes: svn path=/head/; revision=122510
* - Update to 2.9.0Sergey Matveychuk2004-11-269-1812/+1632
| | | | | | | | | | - Pass maintainership to submitter PR: ports/74333 Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar> Notes: svn path=/head/; revision=122469
* Add missing filesKris Kennaway2004-11-261-0/+11
| | | | Notes: svn path=/head/; revision=122450
* - Update to 2.03Sergey Matveychuk2004-11-257-384/+175
| | | | | | | | | | - Pass maintainership to submitter PR: ports/74332 Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar> Notes: svn path=/head/; revision=122437
* - Remove a junk white space.Sergey Matveychuk2004-11-251-1/+1
| | | | Notes: svn path=/head/; revision=122436
* - Update to 2.3.2Sergey Matveychuk2004-11-255-69/+38
| | | | | | | | | | | - Add WITH_PVM knob - Pass maintainership to submitter PR: ports/74331 Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar> Notes: svn path=/head/; revision=122435
* Minor cleanup.Mark Linimon2004-11-231-2/+2
| | | | | | | | PR: ports/72094 Submitted by: M. L. Dodson <bdodson at scms dot utmb dot edu> (maintainer) Notes: svn path=/head/; revision=122212
* - Update biology/biojava to 1.30Volker Stolz2004-11-223-613/+255
| | | | | | | | | | | | - Install javadoc and example files - Assign maintainership to submitter PR: ports/73391 Submitted by: Cheng-Dae Choe Add. reviewing: hq@ Notes: svn path=/head/; revision=122147
* With portmgr hat on, reset inactive maintainer. These ports are now upMark Linimon2004-11-208-8/+8
| | | | | | | for adoption. Notes: svn path=/head/; revision=121990
* With portmgr hat on, reset inactive maintainer.Mark Linimon2004-11-201-1/+1
| | | | Notes: svn path=/head/; revision=121989
* - Distfiles change every few days, so drop md5 checking on themPav Lucistnik2004-11-182-4/+5
| | | | | | | Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=121847
* Add blast, a powerful software package for gene and protein identification,Pav Lucistnik2004-11-116-0/+324
| | | | | | | | | | | using sensitive, selective and rapid similarity searches of protein and nucleotide sequence databases. PR: ports/69636 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Notes: svn path=/head/; revision=121414
* Bump PORTREVISIONS for all ports that depend on atk or pango to ease in theJoe Marcus Clarke2004-11-074-4/+4
| | | | | | | big upgrade. Notes: svn path=/head/; revision=121070
* - Fix build on amd64 (crude hack to pass -fPIC to c++ compiles)Pav Lucistnik2004-11-061-0/+11
| | | | | | | | Reported by: pointyhat via kris Tested on: arved's box Notes: svn path=/head/; revision=121009
* Update to 3.14Kevin Lo2004-11-063-5/+4
| | | | | | | | PR: ports/72422 Submitted by: Choe, Cheng-Dae <whitekid@gmail.com> Notes: svn path=/head/; revision=120935
* Correct a typo: s/linux-opera/linux-openmotif/g.Jeremy Messenger2004-11-011-1/+1
| | | | Notes: svn path=/head/; revision=120615
* - Update to 2004.06.16Pav Lucistnik2004-11-014-167/+276
| | | | | | | | Inspired by: ports/72726 Approved by: maintainer timeout (2 weeks) Notes: svn path=/head/; revision=120614
* Chase the linux-openmotif shared library version and mark biology/spdbv asJeremy Messenger2004-11-011-1/+4
| | | | | | | | | | | broke, I get no respone from the maintainer since Oct 22, 2004. The www/linux-opera works fine with new linux-openmotif. Also, bump PORTREVISION. To fix or update for biology/spdbv is welcome, I shall commit them if I get patch(es) in my Inbox. Notes: svn path=/head/; revision=120609
* Now installs on FreeBSD 5.x.Kris Kennaway2004-10-281-7/+1
| | | | Notes: svn path=/head/; revision=120430
* - Update to 1.30Pav Lucistnik2004-10-273-128/+209
| | | | | | | | | PR: ports/71400 Submitted by: Stefan Walter <sw@gegenunendlich.de> Approved by: maintainer timeout (2 months) Notes: svn path=/head/; revision=120340
* Avoid the use of != statements in ports MakefileMaho Nakata2004-10-241-1/+5
| | | | | | | | PR: 71095 Submitted by: eik Notes: svn path=/head/; revision=120057
* - Update to 3.62Pav Lucistnik2004-10-113-6/+16
| | | | | | | | | | | - Install font files PR: ports/72212 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: David A. Bader <dbader@ece.unm.edu> (maintainer) Notes: svn path=/head/; revision=118625
* BROKEN on 5.x: Does not compileKris Kennaway2004-09-291-1/+7
| | | | | | | Approved by: portmgr (self) Notes: svn path=/head/; revision=118494
* Upgrade to latest revision to make fetchable again.Thierry Thomas2004-09-252-3/+3
| | | | | | | Approved by: portmgr (marcus) Notes: svn path=/head/; revision=118384
* Update config.h and unbreak.Thierry Thomas2004-09-241-2/+2
| | | | | | | | | PR: ports/71505 Submitted by: maintainer Approved by: portmgr (marcus). Notes: svn path=/head/; revision=118369
* The build should be fixed now, so remove BROKEN mark.Alexey Dokuchaev2004-09-231-7/+1
| | | | | | | Approved by: portmgr (marcus), fjoe (mentor, implicit) Notes: svn path=/head/; revision=118350