aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* biology/py-fastTSNE: Add the PORTSCOUT lineYuri Victorovich2019-03-311-0/+2
* biology/ngs-sdk: Update 2.9.4 -> 2.9.6Yuri Victorovich2019-03-313-5/+5
* - Add LICENSEDmitry Marakasov2019-03-301-4/+4
* Mark as broken on aarch64:Mark Linimon2019-03-291-0/+2
* biology/p5-TrimGalore: Upgrade to 0.6.1Jason W. Bacon2019-03-244-11/+39
* biology/py-cutadapt: Upgrade to 2.1Jason W. Bacon2019-03-242-7/+13
* UnbreakAntoine Brodin2019-03-242-2/+2
* biology/py-dnaio: Read and write FASTQ and FASTAJason W. Bacon2019-03-244-0/+27
* biology/bowtie2: Upgrade to 2.3.5Jason W. Bacon2019-03-185-41/+111
* Qt4 deprecation: Remove Qt4 and its consumes.Tobias C. Berner2019-03-165-62/+0
* biology/cd-hit: Upgrade to 4.8.1Jason W. Bacon2019-03-144-14/+106
* biology/bedtools: unbreak with libc++ 8Jan Beich2019-03-041-0/+5
* biology/paml: Update to version 4.9iJoseph Mingrone2019-02-263-4/+6
* New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end se...Yuri Victorovich2019-02-256-0/+116
* kallisto: Upgrade to 0.45.1, unbundle hstlibJason W. Bacon2019-02-245-16/+65
* biology/unanimity: Upgrade to 3.4.1Jason W. Bacon2019-02-243-5/+5
* biology/ngs-sdk: Update 2.9.3 -> 2.9.4Yuri Victorovich2019-02-233-5/+5
* biology/igv: Update 2.4.16 -> 2.4.19Yuri Victorovich2019-02-232-6/+6
* biology/unanimity is not compatible with python 3.xAntoine Brodin2019-02-222-2/+2
* Update to 1.007005 (1.7.5)Sunpoet Po-Chuan Hsieh2019-02-223-17/+2
* biology/iqtree: Update to version 1.6.10Joseph Mingrone2019-02-212-5/+4
* Update to 1.007003Sunpoet Po-Chuan Hsieh2019-02-204-67/+16
* Update to 1.007004 (1.7.4)Sunpoet Po-Chuan Hsieh2019-02-205-998/+189
* Add p5-Bio-Cluster 1.7.3Sunpoet Po-Chuan Hsieh2019-02-205-0/+55
* biology/pbseqan: Mark deprecatedJason W. Bacon2019-02-201-0/+2
* biology/unanimity: Upgrade to 3.4.0Jason W. Bacon2019-02-2010-70/+133
* biology/pbbam: Upgrade to 0.18.0 releaseJason W. Bacon2019-02-194-23/+47
* biology/pbcopper: Upgrade to 0.4.1 releaseJason W. Bacon2019-02-195-38/+26
* vec_splats function is not supported by base GCC. Add USES=compiler:c11Mark Linimon2019-02-181-2/+2
* biology/pbseqan: Minor upgrade to latest commitJason W. Bacon2019-02-172-6/+6
* Update dns/libidn2 to 2.1.1Sunpoet Po-Chuan Hsieh2019-02-092-2/+2
* biology/checkm: Update 1.0.12 -> 1.0.13Yuri Victorovich2019-02-092-5/+4
* - Update WWWDmitry Marakasov2019-02-071-1/+1
* biology/dsr-pdb: Correct typoYuri Victorovich2019-02-051-1/+1
* biology/dsr-pdb: Add c++11 flags because boost isn't found without itYuri Victorovich2019-02-053-2/+25
* New port: biology/figtree: Graphical viewer of phylogenetic treesYuri Victorovich2019-02-034-0/+49
* New port: biology/graphlan: High-quality circular representations of taxonomi...Yuri Victorovich2019-02-035-0/+127
* New port: biology/prodigy-lig: Prediction of protein-small molecule binding a...Yuri Victorovich2019-02-034-0/+34
* New port: biology/prodigal: Protein-coding gene prediction for prokaryotic ge...Yuri Victorovich2019-02-034-0/+51
* Move Objective-C ports to the v2 GNUstep ABI.David Chisnall2019-02-031-1/+1
* biology/py-loompy: Update 2.0.16 -> 2.0.17Yuri Victorovich2019-02-022-5/+5
* New port: biology/dsr-pdb: Simple C++ PDB reader (reads the protein descripti...Yuri Victorovich2019-01-299-0/+122
* biology/py-pysam: Update 0.15.1 -> 0.15.2Yuri Victorovich2019-01-262-4/+4
* Sort categories Makefiles.Mathieu Arnold2019-01-221-1/+1
* Fix Qt5 symbol version scripts to put the catch-all clause first. WhenTijl Coosemans2019-01-163-2/+3
* biology/stacks: Upgrade to 2.3Jason W. Bacon2019-01-124-38/+14
* New port: biology/hisat2: Program for mapping next-generation sequencing readsJason W. Bacon2019-01-117-0/+577
* Fixup bulk -a errors with BUILD_ALL_PYTHON_FLAVORS=yes.Mathieu Arnold2019-01-111-1/+2
* biology/seqtools: fix build on current, if lld is lld7Kurt Jaeger2019-01-071-0/+1
* biology/groopm fails to build with python3Antoine Brodin2019-01-071-1/+1
generated by cgit v1.2.3 (git 2.25.1) at 2024-06-02 12:34:04 +0000