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biology
Commit message (
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Author
Age
Files
Lines
*
biology/hyphy: Update to version 2.3.14.16
Joseph Mingrone
2018-10-20
3
-5
/
+11
*
biology/py-loompy: Update 2.0.14 -> 2.0.15
Yuri Victorovich
2018-10-19
2
-4
/
+4
*
New port: biology/py-gffutils: Work with GFF and GTF files in a flexible data...
Yuri Victorovich
2018-10-19
4
-0
/
+36
*
New port: biology/py-pyfaidx: Efficient pythonic random access to fasta subse...
Yuri Victorovich
2018-10-19
4
-0
/
+38
*
New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) f...
Yuri Victorovich
2018-10-19
4
-0
/
+32
*
biology/ngs-sdk: Update 2.9.2 -> 2.9.3
Yuri Victorovich
2018-10-18
3
-5
/
+5
*
biology/py-orange3-single-cell: Update 0.8.1 -> 0.8.2
Yuri Victorovich
2018-10-17
2
-4
/
+4
*
biology/iqtree: Update to version 1.6.7.1
Joseph Mingrone
2018-10-16
2
-4
/
+4
*
biology/py-orange3-single-cell: Update 0.8.0 -> 0.8.1
Yuri Victorovich
2018-10-14
2
-6
/
+11
*
biology/py-orange3-bioinformatics: Update 3.2.0 -> 3.2.2
Yuri Victorovich
2018-10-14
2
-4
/
+4
*
Deprecate most glib12 consumers
Antoine Brodin
2018-10-12
1
-0
/
+3
*
Update devel/tbb to version 2019.1 and bump dependent ports' revisions
Ganael LAPLANCHE
2018-10-11
1
-1
/
+1
*
Update to 1.73
Sunpoet Po-Chuan Hsieh
2018-10-10
2
-6
/
+10
*
New port: biology/ncbi-cxx-toolkit: NCBI C++ Toolkit
Yuri Victorovich
2018-10-08
5
-0
/
+70
*
biology/ncbi-toolkit: Update 2012.06.20 -> 2017.01.06
Yuri Victorovich
2018-10-07
6
-175
/
+87
*
biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/
Yuri Victorovich
2018-10-07
13
-1004
/
+0
*
biology/py-biom-format: Update to version 2.1.7
Joseph Mingrone
2018-10-06
2
-16
/
+14
*
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
Dag-Erling Smørgrav
2018-10-06
15
-30
/
+30
*
Update devel/tbb to version 2019 and bump dependent port's revisions
Ganael LAPLANCHE
2018-10-04
1
-0
/
+1
*
- Update to 1-14-10
Danilo Egea Gondolfo
2018-09-28
4
-8
/
+9
*
- Unbreak by adding missing pkg-plist
Wen Heping
2018-09-28
2
-2
/
+136
*
Allow building on powerpc64.
Mark Linimon
2018-09-27
1
-1
/
+1
*
Update Objective-C LLVM version to 6.0.
Brooks Davis
2018-09-26
1
-1
/
+1
*
Change 4 ports from net/mpich2 to net/mpich
Yuri Victorovich
2018-09-22
1
-3
/
+5
*
- Update to 1.63
Wen Heping
2018-09-22
2
-4
/
+4
*
Fix build on gcc-based archs by updating USES.
Mark Linimon
2018-09-22
1
-1
/
+1
*
Update to 1.5.2
Sunpoet Po-Chuan Hsieh
2018-09-21
2
-6
/
+7
*
New port: biology/py-loompy: Work with .loom files for single-cell RNA-seq data
Yuri Victorovich
2018-09-21
4
-0
/
+44
*
biology/py-cutadapt: Upgrade to 1.18
Jason W. Bacon
2018-09-20
3
-50
/
+9
*
biology/ngs-sdk: Update 2.9.1 -> 2.9.2
Yuri Victorovich
2018-09-19
3
-5
/
+5
*
Upgrade these ports to USES=compiler:c++11-lang to fix build on gcc-based
Mark Linimon
2018-09-18
1
-1
/
+1
*
More precisely specify USES=compiler to fix build on gcc-based
Mark Linimon
2018-09-18
3
-3
/
+3
*
biology/py-pysam: Update 0.15.0 -> 0.15.1
Yuri Victorovich
2018-09-17
2
-4
/
+4
*
Add DOCS options to ports that should have one.
Mathieu Arnold
2018-09-10
3
-0
/
+6
*
biology/seaview: Fix build with Clang 6
Tobias Kortkamp
2018-09-08
3
-0
/
+65
*
Update science/hdf5 to 1.10.2
Sunpoet Po-Chuan Hsieh
2018-09-05
1
-1
/
+1
*
Update to 1.31.0
Jason E. Hale
2018-09-02
17
-181
/
+201
*
biology/stacks: Enable OpenMP (oversight in previous commit)
Jason W. Bacon
2018-09-01
1
-2
/
+2
*
biology/iqtree: Update to version 1.6.7
Joseph Mingrone
2018-08-27
2
-5
/
+4
*
biology/py-bx-python: Update 0.8.1 -> 0.8.2
Yuri Victorovich
2018-08-26
2
-5
/
+5
*
biology/unanimity: Upgrade to latest release, soften dep version requirements
Jason W. Bacon
2018-08-25
2
-11
/
+10
*
biology/protomol: Fix doubled USES overwriting the old value
Tobias Kortkamp
2018-08-25
1
-3
/
+2
*
biology/protomol: Fix build with Clang 6
Tobias Kortkamp
2018-08-25
1
-0
/
+1
*
biology/primer3: Fix build with Clang 6
Tobias Kortkamp
2018-08-25
1
-0
/
+24
*
biology/libsbml: Fix build with Clang 6
Tobias Kortkamp
2018-08-25
1
-9
/
+2
*
biology/avida: Fix build with Clang 6
Tobias Kortkamp
2018-08-25
1
-0
/
+1
*
biology/lamarc: Fix build with Clang 6
Tobias Kortkamp
2018-08-25
1
-0
/
+2
*
Mark as broken with clang6 after r473289.
Mark Linimon
2018-08-24
1
-1
/
+9
*
- Update to 1.72
Wen Heping
2018-08-24
2
-5
/
+4
*
Remove expired ports:
Rene Ladan
2018-08-16
6
-104
/
+0
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