aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* biology/abyss: fix build on big-endian architecturesPiotr Kubaj2019-06-213-2/+20
* Enable workaround for building on powerpc64.Mark Linimon2019-06-211-2/+8
* biology/mothur: Update 1.42.1-3 -> 1.42.2Yuri Victorovich2019-06-192-6/+5
* biology/py-bx-python: Update 0.8.2 -> 0.8.4Yuri Victorovich2019-06-192-5/+4
* New port: biology/treekin: Efficient computation of RNA folding dynamicsYuri Victorovich2019-06-154-0/+37
* biology/ncbi-blast+: Fix build on powerpc64, add run dep for update_blastdb.plJason W. Bacon2019-06-141-4/+10
* biology/ncbi-blast+: Upgrade to 2.9.0Jason W. Bacon2019-06-123-6/+78
* biology/kallisto: Upgrade to 0.46.0Jason W. Bacon2019-06-122-4/+4
* biology/tRNAscan-SE: Update to 2.0.3Steve Wills2019-06-083-15/+8
* biology/igv: Update 2.5.2 -> 2.5.3Yuri Victorovich2019-06-012-6/+6
* biology/tRNAscan-SE: fix build with GCC-based architectursPiotr Kubaj2019-05-301-1/+3
* biology/cufflinks: Fix build on i386 by removing the hard-coded -m64Yuri Victorovich2019-05-291-0/+16
* biology/bolt-lmm: Mixed model association testing and variance component anal...Jason W. Bacon2019-05-269-0/+228
* New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their...Yuri Victorovich2019-05-256-0/+80
* biology/hhsuite: Fix build on platforms where SIMD instruction set doesn't ex...Yuri Victorovich2019-05-222-0/+36
* biology/fastp: Remove redundant USE_GCCJason W. Bacon2019-05-201-8/+1
* biology/mothur: Add USES=compiler:c++11-langYuri Victorovich2019-05-201-1/+1
* New port: biology/mothur: Software for bioinformatics of the microbial ecolog...Yuri Victorovich2019-05-204-0/+41
* - Update to 3.3.20190321Wen Heping2019-05-202-5/+4
* - Update to 5.18.0Wen Heping2019-05-203-29/+22
* New port: biology/hhsuite: Remote protein homology detection suiteYuri Victorovich2019-05-198-0/+128
* biology/gemma: Lowercase PORTNAME, remove unnecesary USE_GCCJason W. Bacon2019-05-181-9/+3
* biology/gemma: Genome-wide Efficient Mixed Model AssociationJason W. Bacon2019-05-178-0/+431
* biology/jellyfish: Upgrade to 2.2.10, patch for powerpc64Jason W. Bacon2019-05-138-16/+79
* biology/vsearch: Update to 2.13.4Jason W. Bacon2019-05-114-91/+4
* biology/igv: Update 2.5.0 -> 2.5.2Yuri Victorovich2019-05-112-6/+6
* biology/trimadap: Mark only for amd64 and i386Jason W. Bacon2019-05-111-3/+2
* biology/stacks: Remove obsolete pkg-message regarding web interfaceJason W. Bacon2019-05-101-16/+0
* biology/stacks: Upgrade to 2.4Jason W. Bacon2019-05-103-52/+6
* biology/vsearch: Remove powerpc64 supportJason W. Bacon2019-05-091-1/+1
* biology/vsearch: Versatile open-source tool for metagenomicsJason W. Bacon2019-05-098-0/+163
* devel/openmp: phase outJan Beich2019-05-082-1/+2
* biology/tRNAscan-SE: fix build with GCC-based architecturesPiotr Kubaj2019-05-071-1/+1
* biology/minimap2: Upgrade to 2.17Jason W. Bacon2019-05-053-7/+9
* biology/ddocent: Upgrade to 2.7.8Jason W. Bacon2019-05-046-152/+86
* biology/fastp: Respect WITH_DEBUG - do not strip binaryJason W. Bacon2019-05-041-1/+3
* These ports now build on aarch64.Mark Linimon2019-05-031-3/+1
* biology/fastp: Ultra-fast all-in-one FASTQ preprocessorJason W. Bacon2019-05-035-0/+73
* biology/star: Force newer GCC on platforms with GCC 4.2 baseJason W. Bacon2019-05-021-1/+8
* biology/py-cutadapt: Upgrade to 2.3Jason W. Bacon2019-04-272-5/+4
* Clean up plistAntoine Brodin2019-04-251-1/+1
* biology/minimap2: Pairwise aligner for genomic and spliced nucleotide sequencesJason W. Bacon2019-04-245-0/+87
* biology/bowtie2: Clarify CPU-specificityJason W. Bacon2019-04-241-1/+2
* biology/star: Modify PKGBASE to avoid conflict with archivers/starJason W. Bacon2019-04-231-0/+1
* Fix typoSunpoet Po-Chuan Hsieh2019-04-231-2/+2
* Sort PLISTSunpoet Po-Chuan Hsieh2019-04-222-23/+23
* Related to revision 499061 bump ports with USES=fortran to have themGerald Pfeifer2019-04-224-4/+4
* biology/star: Spliced Transcripts Alignment to a ReferenceJason W. Bacon2019-04-216-0/+70
* biology/bowtie2: Upgrade to 2.3.5.1Jason W. Bacon2019-04-214-13/+42
* biology/canu: Fix build on powerpc64 and aarch64Jason W. Bacon2019-04-184-20/+141
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-13 17:57:46 +0000