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* biology/iqtree: Fix distinfo after upstream re-released v1.6.1Joseph Mingrone2017-12-292-3/+4
* biology/iqtree: Update to version 1.6.1Joseph Mingrone2017-12-282-9/+8
* Disable the extra flag "-march=native" on arm to fix builds.Mark Linimon2017-12-271-3/+6
* Update to 2.0.1Sunpoet Po-Chuan Hsieh2017-12-263-5/+31
* biology/canu: Replace += with = for dependsJason W. Bacon2017-12-221-2/+2
* - Fix build on 11+Dmitry Marakasov2017-12-222-4/+11
* [new port] biology/canu: Single molecule sequence assemblerJason W. Bacon2017-12-226-0/+167
* Try to bring some consistency to ports that have x86-specific pieces.Mark Linimon2017-12-212-12/+12
* Switch from swig 2.0 to swig 3.0Baptiste Daroussin2017-12-201-2/+4
* Mark more recently failing ports broken on aarch64.Mark Linimon2017-12-191-2/+3
* Back out previous commits by jbeich demand.Mark Linimon2017-12-182-10/+2
* Bah. Remove spare line from cut-and-paste.Mark Linimon2017-12-181-1/+0
* Attempt to fix build on non-x86 archs. Untested, but does no harmMark Linimon2017-12-182-2/+11
* biology/diamond: Update to version 0.9.14Joseph Mingrone2017-12-132-4/+4
* biology/seqtools: re-try on powerpc* after r449590Jan Beich2017-12-121-2/+0
* - Those ports fail to build with python3Antoine Brodin2017-12-111-1/+1
* Mark several ports newly broken on arm.Mark Linimon2017-12-112-3/+9
* biology/py-biom-format: Add required dependency on math/py-pandas and doJoseph Mingrone2017-12-101-3/+7
* [new port] biology/p5-TrimGalore: Wrapper around Cutadapt and FastQC for adap...Jason W. Bacon2017-12-095-0/+47
* These are also broken on aarch64 in the same way as armv6/7.Mark Linimon2017-12-091-0/+1
* Mark more ports broken that fail on both armv6 and armv7.Mark Linimon2017-12-091-0/+3
* Revert previous fat-fingered commit. These are the error messages fromMark Linimon2017-12-081-2/+2
* Update errror message on armvX.Mark Linimon2017-12-081-2/+2
* biology/fasttree: update to version 2.1.10Jason W. Bacon2017-12-054-19/+45
* biology/py-macs2: Restrict to python 2.7.Jason W. Bacon2017-12-051-2/+2
* Add a USES=python:env, that will not add a dependency on Python.Mathieu Arnold2017-12-042-4/+2
* Fix configure options for gnustep-makeDavid Chisnall2017-12-031-1/+1
* [new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP)...Jason W. Bacon2017-12-024-0/+41
* [new port] biology/kallisto: Quantify abundances of transcripts from RNA-Seq ...Jason W. Bacon2017-12-025-0/+91
* Fix packaging with python3Antoine Brodin2017-12-012-14/+14
* [unbreak] biology/bwa: Remove old patch filesJason W. Bacon2017-12-013-37/+0
* [new port] biology/fastqc: Quality control tool for high throughput sequence ...Jason W. Bacon2017-11-305-0/+260
* biology/py-cutadapt: Remove MASTER_SITE_SUBDIR per mentor commentJason W. Bacon2017-11-301-1/+0
* Convert Python ports to FLAVORS.Mathieu Arnold2017-11-309-17/+15
* For ports that are marked BROKEN on armv6, and also fail to build onMark Linimon2017-11-305-0/+5
* biology/bowtie2: Upgrade to 2.3.3.1Jason W. Bacon2017-11-305-50/+19
* [new port] biology/py-cutadapt: Finds and removes adapter sequences, primers, poJason W. Bacon2017-11-295-0/+74
* biology/bwa: Upgrade to 0.7.17Jason W. Bacon2017-11-282-5/+10
* biology/vcftools: Upgrade to latest release 0.1.15Jason W. Bacon2017-11-272-4/+4
* - Switch to options helpersDmitry Marakasov2017-11-261-1/+5
* biology/diamond: Update to version 0.9.13Joseph Mingrone2017-11-172-4/+4
* - Update to 3.1b2Wen Heping2017-11-115-39/+69
* Fix the context of some patches so that they apply with stricter patch(1)Antoine Brodin2017-11-092-6/+6
* biology/diamond: Update to version 0.9.12Joseph Mingrone2017-11-082-7/+5
* Fix USE_GITHUB usage.Mathieu Arnold2017-11-062-5/+4
* biology/py-pysam: Update to 0.13Yuri Victorovich2017-11-052-6/+8
* biology/diamond: Update to 0.9.11Joseph Mingrone2017-11-033-10/+14
* biology/molden: chase another intransparent upstream distfile upgrade.Johannes M Dieterich2017-11-012-4/+4
* - Fix installing scripts and support binariesWen Heping2017-10-304-8/+39
* Update biology/py-pysam to 0.12.0.1Tobias C. Berner2017-10-262-4/+4
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