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* For ports that are marked BROKEN on armv6, and also fail to build onMark Linimon2017-11-305-0/+5
* biology/bowtie2: Upgrade to 2.3.3.1Jason W. Bacon2017-11-305-50/+19
* [new port] biology/py-cutadapt: Finds and removes adapter sequences, primers, poJason W. Bacon2017-11-295-0/+74
* biology/bwa: Upgrade to 0.7.17Jason W. Bacon2017-11-282-5/+10
* biology/vcftools: Upgrade to latest release 0.1.15Jason W. Bacon2017-11-272-4/+4
* - Switch to options helpersDmitry Marakasov2017-11-261-1/+5
* biology/diamond: Update to version 0.9.13Joseph Mingrone2017-11-172-4/+4
* - Update to 3.1b2Wen Heping2017-11-115-39/+69
* Fix the context of some patches so that they apply with stricter patch(1)Antoine Brodin2017-11-092-6/+6
* biology/diamond: Update to version 0.9.12Joseph Mingrone2017-11-082-7/+5
* Fix USE_GITHUB usage.Mathieu Arnold2017-11-062-5/+4
* biology/py-pysam: Update to 0.13Yuri Victorovich2017-11-052-6/+8
* biology/diamond: Update to 0.9.11Joseph Mingrone2017-11-033-10/+14
* biology/molden: chase another intransparent upstream distfile upgrade.Johannes M Dieterich2017-11-012-4/+4
* - Fix installing scripts and support binariesWen Heping2017-10-304-8/+39
* Update biology/py-pysam to 0.12.0.1Tobias C. Berner2017-10-262-4/+4
* biology/htslib biology/bcftools biology/samtools: Update to 1.6Luca Pizzamiglio2017-10-2525-897/+171
* biology/iqtree: Add EXAMPLES option and fix mess with installation ofJoseph Mingrone2017-10-211-1/+13
* New port, biology/iqtree: Efficient phylogenomic softwareJoseph Mingrone2017-10-214-0/+43
* Mark as broken ports with no public distfilesBaptiste Daroussin2017-10-136-1/+10
* Remove dead master sitesBaptiste Daroussin2017-10-132-2/+3
* biology/molden: unbreak by chasing latest intransparent distfile update.Johannes M Dieterich2017-09-282-4/+4
* devel/boost-*: update to 1.65.1Jan Beich2017-09-251-1/+1
* devel/boost-*: enable C++11 featuresJan Beich2017-09-251-1/+1
* biology/ssaha: unbreak with gcc7Jan Beich2017-09-241-0/+9
* Remove USES=execinfo.Mathieu Arnold2017-09-222-2/+2
* Update tbb to 2018 and bump dependent ports' revisionsGanael LAPLANCHE2017-09-171-1/+1
* Update to 1.007002Sunpoet Po-Chuan Hsieh2017-09-153-23/+5
* Add p5-Bio-FeatureIO 1.6.905Sunpoet Po-Chuan Hsieh2017-09-155-0/+67
* Fix license information for portgs that use "the same license as Perl".Mathieu Arnold2017-09-1510-10/+10
* - Update to 1.007002Wen Heping2017-09-133-15/+4
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2017-09-1015-15/+15
* Update to 3.3.20170530Sunpoet Po-Chuan Hsieh2017-09-042-3/+5
* Remove expired ports:Rene Ladan2017-08-235-87/+0
* Update GNUstep core libraries.David Chisnall2017-08-211-1/+1
* - update to 1.70Wen Heping2017-08-182-4/+4
* biology/diamond: Update to version 0.9.10Joseph Mingrone2017-08-152-4/+4
* - Update to 1.53Wen Heping2017-07-232-4/+4
* Deprecate ports BROKEN for more than 6 monthsAntoine Brodin2017-07-221-0/+2
* biology/seaview: Update version 4.6.1=>4.6.2Muhammad Moinur Rahman2017-07-212-4/+4
* Chase next distfile update. Upstream contacted whether we would be allowed to...Johannes M Dieterich2017-07-132-4/+4
* biology/molden: Unbreak by chasing their latest opaque update to the distribu...Johannes M Dieterich2017-07-122-7/+5
* Update math/gsl to 2.4Tobias C. Berner2017-07-031-1/+1
* biology/diamond: Update to version 0.9.9Joseph Mingrone2017-07-032-4/+4
* Update devel/readline to 7.0 patch 3Sunpoet Po-Chuan Hsieh2017-06-271-1/+1
* Begin deorbit burn of ia64. We have not attempted to build packages forMark Linimon2017-06-251-1/+1
* Mark BROKEN.Mathieu Arnold2017-06-221-0/+2
* biology/diamond: Update to version 0.9.8Joseph Mingrone2017-06-162-4/+4
* - Update WWWDmitry Marakasov2017-06-102-8/+7
* - Update to 0.11.2.2Wen Heping2017-06-102-4/+4
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