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* Fix build with protobuf-2.5.0Vanilla I. Shu2013-03-212-0/+34
| | | | | | | Obtained from: miwi@ Notes: svn path=/head/; revision=314843
* - adopt optionsNGJason Helfman2013-03-181-19/+28
| | | | | | | | | | - trim historical header - tighten COMMENT Approved by: portmgr (miwi) Notes: svn path=/head/; revision=314609
* 1: Upgrade protobuf to 2.5.0.Vanilla I. Shu2013-03-181-0/+1
| | | | | | | | 2: bump revision. 3: document UPDATING. Notes: svn path=/head/; revision=314580
* - adoption of optionsNGJason Helfman2013-03-181-15/+12
| | | | | | | | | - trim historical header Approved by: portmgr (miwi) Notes: svn path=/head/; revision=314532
* - adoption of optionsNGJason Helfman2013-03-182-130/+129
| | | | | | | | | | | - trim historical header - fix mixture of DOCS/EXAMPLES -> EXAMPLES - add shared description for GLUT to bodm Approved by: portmgr (miwi) Notes: svn path=/head/; revision=314531
* - adoption of optionsNGJason Helfman2013-03-181-11/+8
| | | | | | | | | | - trim historical header - tighten COMMENT Approved by: portmgr (miwi) Notes: svn path=/head/; revision=314530
* - adoption of optionsNGJason Helfman2013-03-181-26/+26
| | | | | | | | | | - trim historical header - use tabs in favor of spaces Approved by: portmgr (miwi) Notes: svn path=/head/; revision=314529
* - Update to 2012.06.20Martin Wilke2013-03-146-191/+173
| | | | | | | | PR: 176544 Submitted by: Ports Fury Notes: svn path=/head/; revision=314129
* Convert USE_BISON to USES= bisonBaptiste Daroussin2013-03-081-6/+2
| | | | | | | | | | | | | | | | | It brings bison as a build dependency in case it is set the following way: USES= bison or USES= bison:build it brings bison as a run dependency in case it is set the following way: USES= bison:run it brings bison both as a run and build dependency in case it the set the following way: USES= bison:both While here trim some headers Convert some USE_GNOME= gnomehack to USES= pathfix Notes: svn path=/head/; revision=313635
* Remove compatibility with FreeBSD 7.XRene Ladan2013-03-062-14/+2
| | | | | | | While here pet Makefile headers. Notes: svn path=/head/; revision=313558
* Add missing item to pkg-plist reported by QAT but not reported by poudriere.Eitan Adler2013-03-031-0/+1
| | | | Notes: svn path=/head/; revision=313360
* Update to 2.33Eitan Adler2013-03-032-3/+3
| | | | Notes: svn path=/head/; revision=313319
* - Update to 2.4.1Martin Wilke2013-03-023-124/+45
| | | | | | | | PR: 176552 Submitted by: Ports Fury Notes: svn path=/head/; revision=313250
* Unbreak on 7.X and i386 systems.Alexey Dokuchaev2013-02-254-1/+37
| | | | | | | Reported by: QAT Notes: svn path=/head/; revision=312918
* Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.Alexey Dokuchaev2013-02-236-0/+1218
| | | | | | | | PR: ports/173387 Submitted by: Hannes Hauswedell Notes: svn path=/head/; revision=312798
* - Update to 0.52 [1]Frederic Culot2013-02-163-13/+26
| | | | | | | | | | - Capitalize names (Perl) in COMMENT PR: ports/176003 [1] Submitted by: Gea-Suan Lin <gslin@gslin.org> Notes: svn path=/head/; revision=312356
* - remove empty filesRuslan Makhmatkhanov2013-02-151-0/+0
| | | | Notes: svn path=/head/; revision=312280
* - Fix build with clangMartin Wilke2013-02-103-24/+26
| | | | | | | | PR: 175034 Submitted by: Ports Fury Notes: svn path=/head/; revision=312001
* - Update to 1.27Philippe Audeoud2013-02-052-3/+3
| | | | | | | - Changelog: http://cpansearch.perl.org/src/TFRAYNER/Bio-MAGETAB-1.27/Changes Notes: svn path=/head/; revision=311717
* - Update to 20121109.Marcelo Araujo2013-02-044-43/+25
| | | | | | | | PR: ports/175014 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Notes: svn path=/head/; revision=311601
* - Strip header at request of original creatorThomas Abthorpe2013-01-271-5/+1
| | | | | | | | Submitted by: trevor With hat: portmgr Notes: svn path=/head/; revision=311049
* - Update to 2.32Philippe Audeoud2013-01-242-7/+4
| | | | | | | - Changelog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.32/Changes Notes: svn path=/head/; revision=310932
* Bump PORTREVISION after DESKTOP_ENTRIES updateMax Brazhnikov2013-01-231-0/+1
| | | | Notes: svn path=/head/; revision=310871
* - Update to 9.03.Marcelo Araujo2013-01-145-219/+35
| | | | | | | | PR: ports/172499 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Notes: svn path=/head/; revision=310361
* - Update DESKTOP_ENTRIES:Max Brazhnikov2013-01-071-2/+2
| | | | | | | | | | | | | * rephrase Comment field or use port ${COMMENT} if appropriate * adjust Icon field according to the Desktop Entry Specification * update Categories field: remove deprecated category Application; set main category, if missing - Remove indefinite article and/or rephrase COMMENT - Trim Makefile header - Other minor changes Notes: svn path=/head/; revision=310020
* Take over maintainership.Rene Ladan2012-12-281-1/+1
| | | | | | | Approved by: pav (previous maintainer) Notes: svn path=/head/; revision=309592
* Use the new project URL to let the application attach coorectly to theRene Ladan2012-12-272-18/+15
| | | | | | | | | | | | | | | | | | project, and some cleanups: - use optionsNG - update commands in pkg-install.in - improve %%AMD64%% comment handling - convert Makefile header - remove unused variable SIMAP_URL Bump PORTREVISION PR: ports/174748 Submitted by: myself Approved by: maintainer (pav@) Notes: svn path=/head/; revision=309554
* Cleanup supporting perl version 5.8 and 5.10,Andrej Zverev2012-12-171-7/+1
| | | | | | | lang/perl5.8 and lang/5.10 will be removed from ports tree soon. Notes: svn path=/head/; revision=309105
* - Update to 1.5Wen Heping2012-12-162-3/+3
| | | | | | | Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.5/Changes Notes: svn path=/head/; revision=308979
* Update to 5.0.4Eitan Adler2012-12-142-3/+3
| | | | Notes: svn path=/head/; revision=308917
* - Mark conflict with science/openbabelMax Brazhnikov2012-12-111-6/+4
| | | | | | | - Trim Makefile header Notes: svn path=/head/; revision=308698
* science/openbabel:Max Brazhnikov2012-12-112-2/+13
| | | | | | | | | | | | | | | | - Update openbabel to 2.3.2 - Switch to CMake build system - Add PYTHON and CAIRO options - Don't rename babel binary, mark conflict with ancient biology/babel science/py-openbabel: - Merge py-openbabel to openbabel other: - chase openbabel update Notes: svn path=/head/; revision=308694
* Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIPBaptiste Daroussin2012-12-111-8/+1
| | | | | | | | | | instead given that jar files are just zip files, remove hardcoded do extract target. Reported by: linimon, matthew Notes: svn path=/head/; revision=308665
* Decommissioning java 1.5 (EOLed since October 2009):Baptiste Daroussin2012-12-101-6/+2
| | | | | | | suppress any reference to JAVA_VERSION= 1.5+ (part2) Notes: svn path=/head/; revision=308604
* Decommissioning java 1.5 (EOLed since October 2009):Baptiste Daroussin2012-12-102-2/+2
| | | | | | | suppress any reference to USE_JAVA= 1.5+ (part1) Notes: svn path=/head/; revision=308600
* - Support CC properlyPawel Pekala2012-12-073-35/+26
| | | | | | | | | | | | - Switch to PLIST_FILES - Add option for GTK2 support PR: ports/174174 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes Notes: svn path=/head/; revision=308453
* Update to 2.31.Anton Berezin2012-12-073-9/+11
| | | | | | | | | Changes: http://search.cpan.org/dist/Bio-Graphics/Changes Feature safe: yes Notes: svn path=/head/; revision=308423
* - Reset MAINTAINER due to unrecoverable email bounceRyan Steinmetz2012-12-041-1/+1
| | | | | | | | Reported by: portscout Feature safe: yes Notes: svn path=/head/; revision=308268
* - Fix build with clangPietro Cerutti2012-12-031-0/+56
| | | | | | | Feature safe: yes Notes: svn path=/head/; revision=308138
* - Update to version 6.1.01Armin Pirkovitsch2012-12-0115-753/+788
| | | | | | | | | | | | | | - Add MAKE_JOBS_SAFE - Convert to optionsng - Trim Makefile header PR: ports/171971 Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com> Approved by: beat (mentor) Feature safe: yes Notes: svn path=/head/; revision=308054
* - Update to version 5.0.2Armin Pirkovitsch2012-11-307-275/+79
| | | | | | | | | | | | | - Add MAKE_JOBS_UNSAFE - Convert to optionsng PR: ports/171970 Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com> Approved by: beat (mentor) Feature safe: yes Notes: svn path=/head/; revision=308042
* 2012-11-26 benchmarks/gsbench: No more public distfilesBaptiste Daroussin2012-11-284-51/+0
| | | | | | | | | | | | | | 2012-11-26 benchmarks/xengine: No more public distfiles 2012-11-26 biology/belvu: No more public distfiles 2012-11-26 multimedia/kaffeine-mozilla: No more public distfiles 2012-11-26 www/gnustep-ticker: Abandonware 2012-11-26 net/tryst-examples: Abandonware 2012-11-26 net/tryst: Abandonware Feature safe: yes Notes: svn path=/head/; revision=307892
* - Update to version 2.0Wen Heping2012-11-156-80/+60
| | | | | | | | | | | | - Update pkg-descr PR: 172497 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes Notes: svn path=/head/; revision=307436
* - Update to version 4.4.0Pawel Pekala2012-10-305-76/+56
| | | | | | | | | | | | | | | | | - Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes Notes: svn path=/head/; revision=306709
* Update to version 2.12.4Pawel Pekala2012-10-302-10/+4
| | | | | | | | | PR: ports/172218 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes Notes: svn path=/head/; revision=306688
* - Reset maintainer to perl@Wen Heping2012-10-301-1/+1
| | | | | | | Feature safe: yes Notes: svn path=/head/; revision=306655
* - Update to 1.4Wen Heping2012-10-302-8/+4
| | | | | | | | | | Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.4/Changes - Trim Makefile headers Feature safe: yes Notes: svn path=/head/; revision=306654
* - Trim Makefile headersWen Heping2012-10-301-6/+2
| | | | | | | | | - Reset maintainer to perl@ Feature safe: yes Notes: svn path=/head/; revision=306652
* Deprecate a bunch of ports that are either abandonware and/or for which no moreBaptiste Daroussin2012-10-261-0/+3
| | | | | | | | | | public distfiles are available, or for which are -devel version with a more recent stable version for long Feature safe: yes Notes: svn path=/head/; revision=306447
* 2012-10-20 chinese/wangttf: No more public distfilesBaptiste Daroussin2012-10-256-100/+0
| | | | | | | | | | | | | 2012-10-20 chinese/stardict-dict-zh_TW: No more public distfiles 2012-10-20 chinese/stardict-dict-zh_CN: No more public distfiles 2012-10-20 chinese/mingunittf: No more public distfiles 2012-10-20 chinese/dfsongsd: No more public distfiles 2012-10-20 biology/dna-qc: No more public distfiles Feature safe: yes Notes: svn path=/head/; revision=306411
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