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* Update SphinxDanilo G. Baio2020-05-111-1/+1
* biology/hhsuite: fix build on powerpc64 elfv2Piotr Kubaj2020-05-111-1/+4
* - Resurrect and unbreak by updating to version 34.0Alexey Dokuchaev2020-05-1012-0/+1774
* Update devel/gmake to 4.3.Tijl Coosemans2020-05-091-0/+22
* Update to 7.6.13Mateusz Piotrowski2020-05-092-4/+4
* Bump 37 ports depending on math/openblas through USES=blaslapack:openblas bec...Yuri Victorovich2020-05-062-1/+2
* Bump 46 ports depending on math/openblas because the after the recent math/op...Yuri Victorovich2020-05-062-1/+2
* Preserve Gradle 6.2.2 for biology/gatkTobias Kortkamp2020-05-061-2/+2
* Remove expired ports:Rene Ladan2020-05-0535-2475/+0
* biology/ruby-bio: remove expired optional dependency on textproc/ruby-xmlparserRene Ladan2020-05-051-3/+1
* biology/plink: Whole genome association analysis toolsetJason W. Bacon2020-05-046-0/+94
* - update libgd to 2.3.0Dirk Meyer2020-05-042-1/+2
* biology/hyphy: Update to version 2.5.12Joseph Mingrone2020-05-033-5/+5
* biology/iqtree: Update to version 2.0.4Joseph Mingrone2020-05-022-5/+7
* biology/hyphy: Update to version 2.5.10Joseph Mingrone2020-04-252-4/+4
* biology/diamond: Update to version 0.9.32Joseph Mingrone2020-04-242-5/+4
* - Swap back from net/openmpi3 to net/openmpiDanilo Egea Gondolfo2020-04-211-3/+3
* - Swap back from net/openmpi3 to net/openmpiDanilo Egea Gondolfo2020-04-211-3/+3
* Update to 7.6.9Mateusz Piotrowski2020-04-192-4/+4
* - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)Danilo Egea Gondolfo2020-04-191-3/+2
* Update to 7.6.8Mateusz Piotrowski2020-04-182-6/+5
* - Move OpenMPI support to net/openmpi3. OpenMPI 1 and 2 were deprecated.Danilo Egea Gondolfo2020-04-151-2/+3
* biology/gcta: Genome-wide Complex Trait AnalysisJason W. Bacon2020-04-159-0/+218
* Correct typo in pkg-message.Michael Gmelin2020-04-141-2/+2
* Improve startup script, join "Team FreeBSD" by defaultMichael Gmelin2020-04-143-11/+85
* biology/py-macs2: Upgrade to 2.2.7.1Jason W. Bacon2020-04-143-5/+29
* - Move OpenMPI support to net/openmpi3. OpenMPI 1 is deprecated.Danilo Egea Gondolfo2020-04-121-4/+4
* biology/fastp: Upgrade to 0.20.1Jason W. Bacon2020-04-093-8/+15
* biology/star: Upgrade to 2.7.3aJason W. Bacon2020-04-092-4/+4
* Deprecate ports broken for more than 6 monthsAntoine Brodin2020-04-045-0/+10
* biology/ngs-sdk: Update 2.10.4 -> 2.10.5Yuri Victorovich2020-04-044-12/+12
* Cosmetic changeSunpoet Po-Chuan Hsieh2020-04-021-2/+3
* Cosmetic changeSunpoet Po-Chuan Hsieh2020-04-021-2/+3
* kallisto: Patch for build with GCCJason W. Bacon2020-04-012-0/+11
* Update devel/tbb to 2020.2 and bump dependent port's revisionsGanael LAPLANCHE2020-04-011-0/+1
* Update WWWSunpoet Po-Chuan Hsieh2020-03-311-1/+1
* biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89Yuri Victorovich2020-03-313-17/+10
* Update WWWMateusz Piotrowski2020-03-302-2/+2
* biology/hyphy: Update to version 2.5.8Joseph Mingrone2020-03-283-5/+7
* Load appropriate Linuxulator bits automatically when starting serviceMateusz Piotrowski2020-03-232-1/+2
* Improve pkg-messageMateusz Piotrowski2020-03-221-6/+9
* biology/seaview: Update version 5.0=>5.0.2Muhammad Moinur Rahman2020-03-222-4/+4
* Resurrect biology/linux-foldingathomeMateusz Piotrowski2020-03-217-0/+214
* biology/diamond: Update to version 0.9.31.2Joseph Mingrone2020-03-212-4/+5
* biology/canu: Upgrade to 2.0Jason W. Bacon2020-03-203-9/+4
* biology/hyphy: Update to version 2.5.7Joseph Mingrone2020-03-202-4/+4
* Deprecate java/openjfx8-devel consumersTobias Kortkamp2020-03-191-0/+3
* biology/hyphy: Update to version 2.5.6Joseph Mingrone2020-03-173-5/+4
* Mark BROKEN: fails to buildAntoine Brodin2020-03-101-0/+2
* Drop dependency on devel/openmpJan Beich2020-03-083-7/+5
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