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biology
Commit message (
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Author
Age
Files
Lines
*
Mark as BROKEN on powerpc64 12. It builds on -head.
Mark Linimon
2020-05-26
1
-1
/
+2
*
biology/py-dnaio: Upgrade to 0.4.2
Jason W. Bacon
2020-05-24
2
-4
/
+4
*
biology/ugene: prepare for Qt5-5.15
Tobias C. Berner
2020-05-19
4
-0
/
+40
*
Mark as BROKEN on powerpc64:
Mark Linimon
2020-05-17
1
-0
/
+2
*
Bump PORTREVISION for security/nettle shlib change
Sunpoet Po-Chuan Hsieh
2020-05-16
2
-1
/
+2
*
New port: biology/py-hits: Utilities for processing high-throughput sequencin...
Yuri Victorovich
2020-05-16
4
-0
/
+27
*
biology/py-scikit-bio: Fix license
Yuri Victorovich
2020-05-16
1
-1
/
+1
*
biology/py-scikit-bio: Remove bogus lines
Yuri Victorovich
2020-05-16
1
-5
/
+0
*
New port: biology/py-scikit-bio: Data structures, algorithms, educational res...
Yuri Victorovich
2020-05-16
4
-0
/
+44
*
New port: biology/py-pandas-charm: Library for getting character matrices int...
Yuri Victorovich
2020-05-16
4
-0
/
+31
*
New port: biology/py-ete3: Framework for the analysis and visualization of trees
Yuri Victorovich
2020-05-16
4
-0
/
+43
*
Add compiler:c++11-lang to USES to fix build on GCC-based systems:
Mark Linimon
2020-05-15
1
-1
/
+1
*
New port: biology/scrm: Coalescent simulator for biological sequences
Yuri Victorovich
2020-05-15
5
-0
/
+45
*
Update Sphinx
Danilo G. Baio
2020-05-11
1
-1
/
+1
*
biology/hhsuite: fix build on powerpc64 elfv2
Piotr Kubaj
2020-05-11
1
-1
/
+4
*
- Resurrect and unbreak by updating to version 34.0
Alexey Dokuchaev
2020-05-10
12
-0
/
+1774
*
Update devel/gmake to 4.3.
Tijl Coosemans
2020-05-09
1
-0
/
+22
*
Update to 7.6.13
Mateusz Piotrowski
2020-05-09
2
-4
/
+4
*
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas bec...
Yuri Victorovich
2020-05-06
2
-1
/
+2
*
Bump 46 ports depending on math/openblas because the after the recent math/op...
Yuri Victorovich
2020-05-06
2
-1
/
+2
*
Preserve Gradle 6.2.2 for biology/gatk
Tobias Kortkamp
2020-05-06
1
-2
/
+2
*
Remove expired ports:
Rene Ladan
2020-05-05
35
-2475
/
+0
*
biology/ruby-bio: remove expired optional dependency on textproc/ruby-xmlparser
Rene Ladan
2020-05-05
1
-3
/
+1
*
biology/plink: Whole genome association analysis toolset
Jason W. Bacon
2020-05-04
6
-0
/
+94
*
- update libgd to 2.3.0
Dirk Meyer
2020-05-04
2
-1
/
+2
*
biology/hyphy: Update to version 2.5.12
Joseph Mingrone
2020-05-03
3
-5
/
+5
*
biology/iqtree: Update to version 2.0.4
Joseph Mingrone
2020-05-02
2
-5
/
+7
*
biology/hyphy: Update to version 2.5.10
Joseph Mingrone
2020-04-25
2
-4
/
+4
*
biology/diamond: Update to version 0.9.32
Joseph Mingrone
2020-04-24
2
-5
/
+4
*
- Swap back from net/openmpi3 to net/openmpi
Danilo Egea Gondolfo
2020-04-21
1
-3
/
+3
*
- Swap back from net/openmpi3 to net/openmpi
Danilo Egea Gondolfo
2020-04-21
1
-3
/
+3
*
Update to 7.6.9
Mateusz Piotrowski
2020-04-19
2
-4
/
+4
*
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
Danilo Egea Gondolfo
2020-04-19
1
-3
/
+2
*
Update to 7.6.8
Mateusz Piotrowski
2020-04-18
2
-6
/
+5
*
- Move OpenMPI support to net/openmpi3. OpenMPI 1 and 2 were deprecated.
Danilo Egea Gondolfo
2020-04-15
1
-2
/
+3
*
biology/gcta: Genome-wide Complex Trait Analysis
Jason W. Bacon
2020-04-15
9
-0
/
+218
*
Correct typo in pkg-message.
Michael Gmelin
2020-04-14
1
-2
/
+2
*
Improve startup script, join "Team FreeBSD" by default
Michael Gmelin
2020-04-14
3
-11
/
+85
*
biology/py-macs2: Upgrade to 2.2.7.1
Jason W. Bacon
2020-04-14
3
-5
/
+29
*
- Move OpenMPI support to net/openmpi3. OpenMPI 1 is deprecated.
Danilo Egea Gondolfo
2020-04-12
1
-4
/
+4
*
biology/fastp: Upgrade to 0.20.1
Jason W. Bacon
2020-04-09
3
-8
/
+15
*
biology/star: Upgrade to 2.7.3a
Jason W. Bacon
2020-04-09
2
-4
/
+4
*
Deprecate ports broken for more than 6 months
Antoine Brodin
2020-04-04
5
-0
/
+10
*
biology/ngs-sdk: Update 2.10.4 -> 2.10.5
Yuri Victorovich
2020-04-04
4
-12
/
+12
*
Cosmetic change
Sunpoet Po-Chuan Hsieh
2020-04-02
1
-2
/
+3
*
Cosmetic change
Sunpoet Po-Chuan Hsieh
2020-04-02
1
-2
/
+3
*
kallisto: Patch for build with GCC
Jason W. Bacon
2020-04-01
2
-0
/
+11
*
Update devel/tbb to 2020.2 and bump dependent port's revisions
Ganael LAPLANCHE
2020-04-01
1
-0
/
+1
*
Update WWW
Sunpoet Po-Chuan Hsieh
2020-03-31
1
-1
/
+1
*
biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89
Yuri Victorovich
2020-03-31
3
-17
/
+10
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