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* Umark BROKEN, stale distfile removed from ftp-master.Erwin Lansing2008-01-271-2/+0
| | | | Notes: svn path=/head/; revision=206277
* - Update to 2.4.2 (fix fetch problems)Martin Wilke2008-01-252-4/+4
| | | | | | | Submitted by: pointyhat via pav Notes: svn path=/head/; revision=206206
* Mark BROKEN: does not fetchErwin Lansing2008-01-251-0/+2
| | | | Notes: svn path=/head/; revision=206203
* - Update to 2.4.1Martin Wilke2008-01-204-15/+46
| | | | | | | | PR: 119719 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Notes: svn path=/head/; revision=205912
* Fix build on !i386Tilman Keskinoz2008-01-041-9/+5
| | | | | | | | | PR: 118922 Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp> Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> Notes: svn path=/head/; revision=205000
* - Update to 2.0Pav Lucistnik2007-12-1515-406/+60
| | | | | | | | PR: ports/117713 Submitted by: Motomichi Matsuzaki <mzaki@e-mail.ne.jp> Notes: svn path=/head/; revision=203771
* MrBayes is a program for the Bayesian estimation of phylogeny.Martin Wilke2007-12-155-0/+60
| | | | | | | | | | | | | | | | | | Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp Notes: svn path=/head/; revision=203737
* MUMmer is a modular system for the rapid whole genome alignment of finishedMartin Wilke2007-12-145-0/+79
| | | | | | | | | | | | | | or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools. WWW: http://mummer.sourceforge.net/ PR: ports/118142 Submitted by: Tony Maher Notes: svn path=/head/; revision=203638
* - Mark BROKEN outside i386: does not compilePav Lucistnik2007-12-041-0/+4
| | | | | | | | Reported by: pointyhat Approved by: portmgr (hat) Notes: svn path=/head/; revision=202901
* - Allow build with AMD64Martin Wilke2007-10-282-2/+5
| | | | | | | | | | | - Fix pkg-plist - Bump PORTREVISION PR: 117435 Submitted by: "M. L. Dodson" <mldodson@comcast.net> (maintainer) Notes: svn path=/head/; revision=202239
* - Update to 1.1.0Cheng-Lung Sung2007-10-243-74/+86
| | | | | | | | | PR: ports/117369 Submitted by: Motomichi Matsuzaki <mzaki_AT_e-mail dot ne dot jp> Approved by: maintainer (Mauricio Herrera Cuadra) Notes: svn path=/head/; revision=201876
* - Update to 2.1.2bMartin Wilke2007-10-235-37/+20
| | | | | | | | PR: 117336 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Notes: svn path=/head/; revision=201859
* Migration from bison 1.x to 2.xAde Lovett2007-10-171-1/+2
| | | | | | | | PR: 117086 Tested by: -exp runs Notes: svn path=/head/; revision=201613
* - Update to 2.1Martin Wilke2007-10-087-18/+196
| | | | | | | | PR: 116017 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Notes: svn path=/head/; revision=201095
* - Sort category MakefilesAndrew Pantyukhin2007-10-051-2/+2
| | | | | | | | Inspired by: Jason Harris <jharris@widomaker.com> Howto: http://twiki.cenkes.org/Cenkes/SortingCategoryMakefiles Notes: svn path=/head/; revision=200970
* - Fix typo in WWWPav Lucistnik2007-10-041-1/+1
| | | | Notes: svn path=/head/; revision=200799
* Remove always-false/true conditions based on OSVERSION 500000Edwin Groothuis2007-10-041-1/+1
| | | | Notes: svn path=/head/; revision=200767
* Mark as broken on gcc4.2.Mark Linimon2007-10-021-1/+7
| | | | Notes: svn path=/head/; revision=200623
* Mark as broken with gcc4.2.Mark Linimon2007-10-021-0/+4
| | | | Notes: svn path=/head/; revision=200622
* biology/linux-foldingathome needs to run as root?Edwin Groothuis2007-09-233-6/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | (also: update to 5.0.4) Upon installing FoldingAtHome I ran the software from a user account only to find that I was stuck in a loop of trying to enter configuration options. Shortly thereafter I realized that it was trying to write to /usr/local/share/foldingathome, and therefore requires being run as root to write there unless one changes permissions there. Seing as this isn't installed with a startup script for daemonization, and running as root seems a little excessive for this application, should this be adapted to run from a user account or set up to be able to start at boot? And from maintainer: This diff updates the port to version 5.04, and adds support to running as normal user using ~/.fah directory. PR: ports/113335 Submitted by: James Snyder <jbsnyder@fanplastic.org> Approved by: maintainer Notes: svn path=/head/; revision=199937
* Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.Mark Linimon2007-09-087-39/+5
| | | | | | | | | | | Drop support for antique perl. Work done by: gabor Sponsored by: Google Summer of Code 2007 Hat: portmgr Notes: svn path=/head/; revision=199069
* - Update to 1.06Martin Wilke2007-09-072-12/+5
| | | | | | | - Remove 4.X cruft Notes: svn path=/head/; revision=199031
* - Update to version 2.3Ion-Mihai Tetcu2007-09-034-46/+57
| | | | | | | | PR: ports/116019 Submitted by: KATO Tsuguru Notes: svn path=/head/; revision=198681
* - Chase x11-toolkits/pmw renamed to x11-toolkits/py-PmwRong-En Fan2007-09-021-2/+2
| | | | | | | PR: 115302 Notes: svn path=/head/; revision=198632
* Replace IGNORE with ONLY_FOR_ARCHS for this binary port.Kris Kennaway2007-08-091-9/+2
| | | | | | | Submitted by: maintainer Notes: svn path=/head/; revision=197358
* Fix pkg-plistLars Engels2007-08-021-0/+1
| | | | | | | | Spotted by: pav Approved by: miwi (mentor) Notes: svn path=/head/; revision=196987
* Update to 2.0.10Lars Engels2007-07-314-22/+22
| | | | | | | | | PR: 114738 Submitted by: KATO Tsuguru <tkato432 (AT) yahoo.com> Approved by: miwi (mentor) Notes: svn path=/head/; revision=196859
* - cleanup after gnustep-make-2.0.1Dirk Meyer2007-07-221-1/+0
| | | | | | | Approved by: maintainer (implicit) Notes: svn path=/head/; revision=196074
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.Maho Nakata2007-07-141-7/+2
| | | | Notes: svn path=/head/; revision=195563
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.Maho Nakata2007-07-121-4/+2
| | | | Notes: svn path=/head/; revision=195449
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.Maho Nakata2007-07-122-9/+2
| | | | Notes: svn path=/head/; revision=195448
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.Maho Nakata2007-07-121-5/+1
| | | | Notes: svn path=/head/; revision=195447
* - Runs on 7.0-CURRENT with compat6xPav Lucistnik2007-07-081-0/+4
| | | | | | | Reported by: Rene Ladan <r.c.ladan@gmail.com> Notes: svn path=/head/; revision=195216
* - Update to version 9Rong-En Fan2007-07-083-1313/+1505
| | | | | | | | | | | | - Don't install CVS directories which are going to be removed in next release PR: ports/113831 Submitted by: Thomas Abthorpe <thomas at goodking.ca> Approved by: maintainer timeout (20 days) Notes: svn path=/head/; revision=195215
* dyeske at yahoo dot com -> dyeske at gmail dot comEdwin Groothuis2007-07-054-6/+6
| | | | Notes: svn path=/head/; revision=195037
* chase math/gsl lib versionYing-Chieh Liao2007-06-291-2/+2
| | | | Notes: svn path=/head/; revision=194427
* Bump to v0.16.Aaron Dalton2007-06-193-6/+53
| | | | | | | | PR: 111719 Submitted by: araujo@bsdmail.org Notes: svn path=/head/; revision=193895
* - Fix the build with GCC 4.2Alexey Dokuchaev2007-06-182-7/+32
| | | | | | | | | - Remove BROKEN tag Reported by: pointyhat (logs) Notes: svn path=/head/; revision=193835
* - Fix typos.Martin Wilke2007-05-311-3/+3
| | | | | | | Reported by: stas@ Notes: svn path=/head/; revision=192436
* - Update to 1.43Martin Wilke2007-05-304-92/+167
| | | | | | | | | PR: 111817 Submitted by: "P.BandieraPaiva" <paiva@unifesp.br> Approved by: maintainer Notes: svn path=/head/; revision=192382
* BROKEN: UnfetchableKris Kennaway2007-05-261-0/+2
| | | | Notes: svn path=/head/; revision=191940
* BROKEN with gcc 4.2Kris Kennaway2007-05-261-1/+7
| | | | Notes: svn path=/head/; revision=191937
* - update for gnustep-make-2.0.0Dirk Meyer2007-05-252-71/+79
| | | | | | | Approved by: gurkan (maintainer) Notes: svn path=/head/; revision=191722
* - update for gnustep-make-2.0.0Dirk Meyer2007-05-251-1/+1
| | | | Notes: svn path=/head/; revision=191718
* swap MASTER_SITES to improve fetchiness on pointyhat which is blocked from ↵Edwin Groothuis2007-05-251-4/+2
| | | | | | | dasher.wustl.edu Notes: svn path=/head/; revision=191699
* BROKEN: UnfetchableKris Kennaway2007-05-251-0/+2
| | | | Notes: svn path=/head/; revision=191691
* - Chase openbabel updatePav Lucistnik2007-05-241-2/+2
| | | | Notes: svn path=/head/; revision=191646
* - Welcome X.org 7.2 \o/.Florent Thoumie2007-05-1935-20/+40
| | | | | | | | - Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}. - Bump PORTREVISION for ports intalling files in ${X11BASE}. Notes: svn path=/head/; revision=191544
* [patch] cleanup non-supported FreeBSD versionsEdwin Groothuis2007-05-021-7/+2
| | | | | | | | | PR: ports/111728 Submitted by: Edwin Groothuis <edwin@mavetju.org> Approved by: maintainer timeout Notes: svn path=/head/; revision=191382
* [patch] cleanup non-supported FreeBSD versionsEdwin Groothuis2007-05-021-7/+1
| | | | | | | | | PR: ports/111726 Submitted by: Edwin Groothuis <edwin@mavetju.org> Approved by: maintainer timeout Notes: svn path=/head/; revision=191381
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