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* biology/jellyfish: Upgrade to 2.2.10, patch for powerpc64Jason W. Bacon2019-05-138-16/+79
* biology/vsearch: Update to 2.13.4Jason W. Bacon2019-05-114-91/+4
* biology/igv: Update 2.5.0 -> 2.5.2Yuri Victorovich2019-05-112-6/+6
* biology/trimadap: Mark only for amd64 and i386Jason W. Bacon2019-05-111-3/+2
* biology/stacks: Remove obsolete pkg-message regarding web interfaceJason W. Bacon2019-05-101-16/+0
* biology/stacks: Upgrade to 2.4Jason W. Bacon2019-05-103-52/+6
* biology/vsearch: Remove powerpc64 supportJason W. Bacon2019-05-091-1/+1
* biology/vsearch: Versatile open-source tool for metagenomicsJason W. Bacon2019-05-098-0/+163
* devel/openmp: phase outJan Beich2019-05-082-1/+2
* biology/tRNAscan-SE: fix build with GCC-based architecturesPiotr Kubaj2019-05-071-1/+1
* biology/minimap2: Upgrade to 2.17Jason W. Bacon2019-05-053-7/+9
* biology/ddocent: Upgrade to 2.7.8Jason W. Bacon2019-05-046-152/+86
* biology/fastp: Respect WITH_DEBUG - do not strip binaryJason W. Bacon2019-05-041-1/+3
* These ports now build on aarch64.Mark Linimon2019-05-031-3/+1
* biology/fastp: Ultra-fast all-in-one FASTQ preprocessorJason W. Bacon2019-05-035-0/+73
* biology/star: Force newer GCC on platforms with GCC 4.2 baseJason W. Bacon2019-05-021-1/+8
* biology/py-cutadapt: Upgrade to 2.3Jason W. Bacon2019-04-272-5/+4
* Clean up plistAntoine Brodin2019-04-251-1/+1
* biology/minimap2: Pairwise aligner for genomic and spliced nucleotide sequencesJason W. Bacon2019-04-245-0/+87
* biology/bowtie2: Clarify CPU-specificityJason W. Bacon2019-04-241-1/+2
* biology/star: Modify PKGBASE to avoid conflict with archivers/starJason W. Bacon2019-04-231-0/+1
* Fix typoSunpoet Po-Chuan Hsieh2019-04-231-2/+2
* Sort PLISTSunpoet Po-Chuan Hsieh2019-04-222-23/+23
* Related to revision 499061 bump ports with USES=fortran to have themGerald Pfeifer2019-04-224-4/+4
* biology/star: Spliced Transcripts Alignment to a ReferenceJason W. Bacon2019-04-216-0/+70
* biology/bowtie2: Upgrade to 2.3.5.1Jason W. Bacon2019-04-214-13/+42
* biology/canu: Fix build on powerpc64 and aarch64Jason W. Bacon2019-04-184-20/+141
* New port: biology/py-xenaPython: API for Xena Hub to access genetic informati...Yuri Victorovich2019-04-124-0/+32
* devel/boost-*: update to 1.70.0Jan Beich2019-04-127-3/+7
* Bump a few PORTREVISIONs after r498529Antoine Brodin2019-04-105-1/+5
* Update devel/readline to 8.0Sunpoet Po-Chuan Hsieh2019-04-091-1/+1
* Use real PORTVERSION of devel/p5-Parse-RecDescentSunpoet Po-Chuan Hsieh2019-04-061-1/+1
* biology/igv: Update 2.4.19 -> 2.5.0Yuri Victorovich2019-04-042-6/+6
* - Fix build in head i386Danilo Egea Gondolfo2019-04-011-0/+1
* biology/py-fastTSNE: Add the PORTSCOUT lineYuri Victorovich2019-03-311-0/+2
* biology/ngs-sdk: Update 2.9.4 -> 2.9.6Yuri Victorovich2019-03-313-5/+5
* - Add LICENSEDmitry Marakasov2019-03-301-4/+4
* Mark as broken on aarch64:Mark Linimon2019-03-291-0/+2
* biology/p5-TrimGalore: Upgrade to 0.6.1Jason W. Bacon2019-03-244-11/+39
* biology/py-cutadapt: Upgrade to 2.1Jason W. Bacon2019-03-242-7/+13
* UnbreakAntoine Brodin2019-03-242-2/+2
* biology/py-dnaio: Read and write FASTQ and FASTAJason W. Bacon2019-03-244-0/+27
* biology/bowtie2: Upgrade to 2.3.5Jason W. Bacon2019-03-185-41/+111
* Qt4 deprecation: Remove Qt4 and its consumes.Tobias C. Berner2019-03-165-62/+0
* biology/cd-hit: Upgrade to 4.8.1Jason W. Bacon2019-03-144-14/+106
* biology/bedtools: unbreak with libc++ 8Jan Beich2019-03-041-0/+5
* biology/paml: Update to version 4.9iJoseph Mingrone2019-02-263-4/+6
* New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end se...Yuri Victorovich2019-02-256-0/+116
* kallisto: Upgrade to 0.45.1, unbundle hstlibJason W. Bacon2019-02-245-16/+65
* biology/unanimity: Upgrade to 3.4.1Jason W. Bacon2019-02-243-5/+5
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