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* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-12-1237-20/+37
* devel/boost-*: update to 1.69.0Jan Beich2018-12-125-3/+5
* Remove biology/njplotJoseph Mingrone2018-12-115-111/+0
* biology/mummer: Add USES=compiler:c++11-langYuri Victorovich2018-12-111-1/+1
* biology/mummer: Update 3.23 -> 4.0.0beta2-2Yuri Victorovich2018-12-113-47/+61
* biology/mummer: Take maintainershipYuri Victorovich2018-12-111-1/+1
* New port: math/checkm: Quality assessment tool for the microbial genomesYuri Victorovich2018-12-074-0/+43
* New port: math/groopm: Metagenomic binning suiteYuri Victorovich2018-12-074-0/+35
* devel/gradle: Update to 5.0Yuri Victorovich2018-12-042-4/+4
* biology/gatk: Change gradle4->gradle because it builds fine with both gradle ...Yuri Victorovich2018-12-031-2/+2
* biology/gatk: Correct the targetYuri Victorovich2018-12-031-1/+1
* New port: biology/gatk: Variant discovery in high-throughput sequencing dataYuri Victorovich2018-12-036-0/+118
* Mark QT4 ports/functionality for removal on 2019-03-15Rene Ladan2018-12-021-0/+3
* biology/igv: Update 2.4.15 -> 2.4.16Yuri Victorovich2018-11-182-6/+6
* biology/molden: update to 5.8.2Johannes M Dieterich2018-11-133-10/+45
* biology/seqan-apps: fix build with GCC-based architecturesSteve Wills2018-11-091-2/+4
* biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gccYuri Victorovich2018-11-071-1/+2
* Fix build failure with base GCC because of double typedefs.Mark Linimon2018-11-051-0/+48
* Remove the incorrect typedefs to fix build on tier-2.Mark Linimon2018-11-052-0/+29
* Remove the inccorrect typedefs to fix build on tier-2.Mark Linimon2018-11-051-4/+0
* biology/igv: Update 2.4.10 -> 2.4.15Yuri Victorovich2018-11-043-24/+21
* biology/canu: Upgrade to 1.8, add experimental SLURM integrationJason W. Bacon2018-11-045-31/+102
* biology/bowtie: Patch for gcc8 and clean upJason W. Bacon2018-11-032-6/+17
* biology/bowtie: Revert previous commit with missing log messageJason W. Bacon2018-11-032-17/+5
* biology/bowtie: PatchJason W. Bacon2018-11-032-5/+17
* biology/py-loompy: Update 2.0.15 -> 2.0.16Yuri Victorovich2018-10-302-4/+4
* biology/iqtree: Update to version 1.6.8Joseph Mingrone2018-10-282-4/+4
* Fix build with tier-2 arches.Mark Linimon2018-10-281-1/+7
* biology/py-pyfaidx: Update 0.5.5.1 -> 0.5.5.2Yuri Victorovich2018-10-282-4/+4
* biology/p5-transdecoder: Upgrade to 5.4.0Jason W. Bacon2018-10-234-30/+44
* biology/hyphy: Update to version 2.3.14.16Joseph Mingrone2018-10-203-5/+11
* biology/py-loompy: Update 2.0.14 -> 2.0.15Yuri Victorovich2018-10-192-4/+4
* New port: biology/py-gffutils: Work with GFF and GTF files in a flexible data...Yuri Victorovich2018-10-194-0/+36
* New port: biology/py-pyfaidx: Efficient pythonic random access to fasta subse...Yuri Victorovich2018-10-194-0/+38
* New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) f...Yuri Victorovich2018-10-194-0/+32
* biology/ngs-sdk: Update 2.9.2 -> 2.9.3Yuri Victorovich2018-10-183-5/+5
* biology/py-orange3-single-cell: Update 0.8.1 -> 0.8.2Yuri Victorovich2018-10-172-4/+4
* biology/iqtree: Update to version 1.6.7.1Joseph Mingrone2018-10-162-4/+4
* biology/py-orange3-single-cell: Update 0.8.0 -> 0.8.1Yuri Victorovich2018-10-142-6/+11
* biology/py-orange3-bioinformatics: Update 3.2.0 -> 3.2.2Yuri Victorovich2018-10-142-4/+4
* Deprecate most glib12 consumersAntoine Brodin2018-10-121-0/+3
* Update devel/tbb to version 2019.1 and bump dependent ports' revisionsGanael LAPLANCHE2018-10-111-1/+1
* Update to 1.73Sunpoet Po-Chuan Hsieh2018-10-102-6/+10
* New port: biology/ncbi-cxx-toolkit: NCBI C++ ToolkitYuri Victorovich2018-10-085-0/+70
* biology/ncbi-toolkit: Update 2012.06.20 -> 2017.01.06Yuri Victorovich2018-10-076-175/+87
* biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/Yuri Victorovich2018-10-0713-1004/+0
* biology/py-biom-format: Update to version 2.1.7Joseph Mingrone2018-10-062-16/+14
* Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, exceptDag-Erling Smørgrav2018-10-0615-30/+30
* Update devel/tbb to version 2019 and bump dependent port's revisionsGanael LAPLANCHE2018-10-041-0/+1
* - Update to 1-14-10Danilo Egea Gondolfo2018-09-284-8/+9
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