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* - Reset more ports I don't use anymorePhilip M. Gollucci2010-02-101-1/+1
| | | | Notes: svn path=/head/; revision=249557
* Update to 3.1.2Edwin Groothuis2010-02-102-4/+4
| | | | Notes: svn path=/head/; revision=249522
* - Update to 2.00Wen Heping2010-02-103-5/+5
| | | | Notes: svn path=/head/; revision=249513
* - update to jpeg-8Dirk Meyer2010-02-0518-18/+19
| | | | Notes: svn path=/head/; revision=249285
* - Update to 0.99Wen Heping2010-02-032-5/+5
| | | | | | | - Update my mail address to FreeBSD Notes: svn path=/head/; revision=249157
* - Update to 3.1.1Martin Wilke2010-02-025-88/+40
| | | | | | | | PR: 143437 Submitted by: Ports Fury Notes: svn path=/head/; revision=249116
* - use $SUB_FILES to dynamically adjust pkg-messagePhilip M. Gollucci2010-01-311-2/+1
| | | | | | | | | PR: ports/142408 Submitted by: Sevan Janiyan <venture37@geeklan.co.uk> Approved by: fernan@iib.unsam.edu.ar (maintainer) Notes: svn path=/head/; revision=248917
* - Remove unneeded dependencies which is in perl-5.8.9 distJun Kuriyama2010-01-294-11/+7
| | | | | | | | | (part 19; last!). Approved by: portmgr (itetcu) Notes: svn path=/head/; revision=248805
* - actually remove old patchPhilip M. Gollucci2010-01-171-31/+0
| | | | | | | Reported by: QAT Notes: svn path=/head/; revision=248001
* - Fix on amd64Philip M. Gollucci2010-01-164-0/+60
| | | | | | | | PR: ports/142472 Submitted by: Edmund Sumbar <esumbar@ualberta.ca> Notes: svn path=/head/; revision=247981
* - Remove unneeded dependencies which is in perl-5.8.9 dist from portsJun Kuriyama2010-01-161-2/+2
| | | | | | | | | | | maintained by (perl|ports|kuriyama)@FreeBSD.org. - Targets are: Test::Simple, Digest::MD5, Locale-Maketext, ExtUtils::MakeMaker, ExtUtils::ParseXS, File::Temp, Getopt::Long, Encode, Digest, Pod::Parser, File::Spec. Notes: svn path=/head/; revision=247977
* - SUB_FILES += pkg-messagePhilip M. Gollucci2010-01-091-4/+1
| | | | | | | | | PR: ports/142407 Submitted by: Sevan Janiyan <venture37@geeklan.co.uk> Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=247490
* - Update to 1.03Wen Heping2010-01-092-5/+5
| | | | | | | - Update my mail address to FreeBSD Notes: svn path=/head/; revision=247431
* - SBU_FILES += pkg-messagePhilip M. Gollucci2010-01-084-56/+54
| | | | | | | | PR: ports/142409 Submitted by: Sevan Janiyan <venture37@geeklan.co.uk> Notes: svn path=/head/; revision=247371
* - Update to 1.995Wen Heping2010-01-072-4/+4
| | | | Notes: svn path=/head/; revision=247298
* - Update to 1.53Wen Heping2010-01-063-99/+39
| | | | | | | | | PR: ports/142221 Submitted by: Wen Heping (myself) Approved by: maintainer Notes: svn path=/head/; revision=247241
* python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)Wen Heping2009-12-295-0/+35
| | | | | | | | | reader for python. WWW: http://simon.net.nz/articles/python-nexus Notes: svn path=/head/; revision=246859
* - Fix fetch errorWen Heping2009-12-271-2/+2
| | | | Notes: svn path=/head/; revision=246740
* - Update to 0.3.7Wen Heping2009-12-242-4/+4
| | | | Notes: svn path=/head/; revision=246518
* - Update to 7.1.11Martin Wilke2009-12-224-41/+49
| | | | | | | | PR: 141812 Submitted by: Ports Fury Notes: svn path=/head/; revision=246432
* - Update to 0.3.5Wen Heping2009-12-212-4/+4
| | | | Notes: svn path=/head/; revision=246330
* For ports maintained by ports@FreeBSD.org, remove names and/orDoug Barton2009-12-2111-22/+0
| | | | | | | | | | | e-mail addresses from the pkg-descr file that could reasonably be mistaken for maintainer contact information in order to avoid confusion on the part of users looking for support. As a pleasant side effect this also avoids confusion and/or frustration for people who are no longer maintaining those ports. Notes: svn path=/head/; revision=246327
* - Update to 1.1.4Wen Heping2009-12-182-11/+11
| | | | | | | | Submitted by: Wen Heping (myself) Approved by: maintainer (via Email) Notes: svn path=/head/; revision=246103
* - Update to 1.4Wen Heping2009-12-173-30/+126
| | | | | | | - Update my mail address to FreeBSD Notes: svn path=/head/; revision=246040
* - Update to 0.3.4Wen Heping2009-12-162-4/+4
| | | | Notes: svn path=/head/; revision=245985
* - Turn over a bunch of p5- ports that change infrequently to perl@Philip M. Gollucci2009-12-131-1/+1
| | | | | | | so more people can look at them. Notes: svn path=/head/; revision=245719
* - Update to 1.994Wen Heping2009-12-113-4/+6
| | | | Notes: svn path=/head/; revision=245540
* - Update to 0.3.3Wen Heping2009-12-063-7/+7
| | | | Notes: svn path=/head/; revision=245268
* - Update to 1.993Wen Heping2009-12-042-4/+4
| | | | Notes: svn path=/head/; revision=245196
* - Update to 1.6.1Wen Heping2009-12-045-912/+939
| | | | | | | Approved by: maintainer (via Email) Notes: svn path=/head/; revision=245194
* Chase math/gsl update,Max Brazhnikov2009-12-011-2/+2
| | | | | | | bump PORTREVISION Notes: svn path=/head/; revision=245074
* - Update to 2.0.12Wen Heping2009-11-292-6/+5
| | | | | | | - Update my mail address to FreeBSD Notes: svn path=/head/; revision=244951
* - Update my mail address to FreeBSDSylvio Cesar Teixeira2009-11-271-1/+1
| | | | | | | Approved by: miwi (mentor) Notes: svn path=/head/; revision=244870
* - Mark MAKE_JOBS_UNSAFEPav Lucistnik2009-11-202-0/+2
| | | | | | | Reported by: pointyhat Notes: svn path=/head/; revision=244567
* - Update to 1.992Wen Heping2009-11-202-5/+5
| | | | | | | - Update my mail address to FreeBSD Notes: svn path=/head/; revision=244495
* - broken checksum mismatchMartin Wilke2009-11-191-0/+2
| | | | Notes: svn path=/head/; revision=244472
* - Mark MAKE_JOBS_UNSAFEPav Lucistnik2009-11-181-0/+1
| | | | | | | Reported by: pointyhat Notes: svn path=/head/; revision=244447
* pyfasta is a python module for fast, memory-efficient, pythonicWen Heping2009-11-185-0/+52
| | | | | | | | | access to fasta sequence files. WWW: http://bitbucket.org/brentp/biostuff/src/ Notes: svn path=/head/; revision=244412
* - Update to 21.1.1Wen Heping2009-11-184-29/+17
| | | | Notes: svn path=/head/; revision=244410
* Velvet is a de novo genomic assembler specially designed for short readDmitry Marakasov2009-11-077-0/+244
| | | | | | | | | | | | | | | | | | sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI). Citation: Velvet: algorithms for de novo short read assembly using de Bruijn graphs. D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008) WWW: http://www.ebi.ac.uk/~zerbino/velvet/ PR: 140147 Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> Notes: svn path=/head/; revision=243919
* - Annotate that 8.x no longer needs libmap hackPav Lucistnik2009-10-011-1/+1
| | | | | | | Reported by: rene Notes: svn path=/head/; revision=242340
* - Update to 4.0.0Wen Heping2009-09-234-13/+23
| | | | | | | | | | | | - Update my mail address to FreeBSD PR: ports/137652 Submitted by: wenheping@gmail.com(myself) Approved by: miwi(mentor) Feature safe: yes Notes: svn path=/head/; revision=241933
* Update to Crux 1.2.0.Jason Evans2009-09-193-26/+29
| | | | | | | Feature safe: yes Notes: svn path=/head/; revision=241754
* UNBREAK: Probably was a temporary failure, checksums are ok now.Renato Botelho2009-09-161-2/+0
| | | | | | | Feature safe: yes Notes: svn path=/head/; revision=241529
* -Update to 3.69Martin Wilke2009-09-162-14/+10
| | | | | | | | | PR: 138813 Submitted by: Ports Fury Feature safe: yes Notes: svn path=/head/; revision=241516
* Bump PORTREVISION for everything that sets USE_FORTRAN=yes which nowGerald Pfeifer2009-09-136-5/+6
| | | | | | | | | implies lang/gcc44 up from lang/gcc43. Approved by: portmgr Notes: svn path=/head/; revision=241308
* - Update to 1.14Philippe Audeoud2009-09-082-4/+4
| | | | Notes: svn path=/head/; revision=241036
* - Update to 138038Martin Wilke2009-09-044-444/+152
| | | | | | | | | PR: 138038 Submitted by: Wen Heping <wenheping@gmail.com> Approved by: maintainer Notes: svn path=/head/; revision=240881
* - Update to 0.982Martin Wilke2009-08-282-5/+5
| | | | | | | | PR: 138264 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer) Notes: svn path=/head/; revision=240490
* Bio::SCF module allows you to read and update (in a restrictedMartin Wilke2009-08-285-0/+46
| | | | | | | | | | | | | | way) SCF chromatographic sequence files. It is an interface to Roger Staden's io-lib. See the installation directions for further instructions. WWW: http://search.cpan.org/dist/Bio-SCF/ PR: ports/138263 Submitted by: Wen Heping <wenheping at gmail.com> Notes: svn path=/head/; revision=240489
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