aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Collapse)AuthorAgeFilesLines
* - Update to 0.45Sunpoet Po-Chuan Hsieh2011-10-292-3/+3
| | | | Notes: svn path=/head/; revision=284602
* The vast majority of pkg-descr files had the following format when theyDoug Barton2011-10-243-10/+1
| | | | | | | | | | | | | | | | | | | had both lines: Author: ... WWW: .... So standardize on that, and move them to the end of the file when necessary. Also fix some more whitespace, and remove more "signature tags" of varying forms, like -- name, etc. s/AUTHOR/Author/ A few other various formatting issues Notes: svn path=/head/; revision=284239
* - remove maintainer tags from pkg-descrEitan Adler2011-10-2211-27/+0
| | | | | | | | Approved by: portmgr Approved by: bapt (mentor) Notes: svn path=/head/; revision=284139
* - Update to 0.43Sunpoet Po-Chuan Hsieh2011-10-173-3/+7
| | | | Notes: svn path=/head/; revision=283659
* - Update to 0.44Wen Heping2011-10-132-4/+4
| | | | Notes: svn path=/head/; revision=283457
* - ${FFLAGS} might contain commasPav Lucistnik2011-10-101-1/+1
| | | | | | | Reported by: pointyhat Notes: svn path=/head/; revision=283344
* - Update to 0.7Wen Heping2011-10-102-3/+3
| | | | | | | ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.7/Changes Notes: svn path=/head/; revision=283281
* - Fix LICENSE (Artistic 1 instead of Artistic 2)Frederic Culot2011-10-071-1/+1
| | | | | | | | | | - Pet portlint(1) PR: ports/161336 Submitted by: Simon Olofsson <simon@olofsson.de> Notes: svn path=/head/; revision=283112
* - Update to 2.25Sunpoet Po-Chuan Hsieh2011-10-023-22/+23
| | | | | | | | | | - Sort MAN3 and PLIST - Pet portlint Changes: http://search.cpan.org/dist/Bio-Graphics/Changes Notes: svn path=/head/; revision=282805
* - Add build depends to silence build warningsSteve Wills2011-09-251-1/+2
| | | | Notes: svn path=/head/; revision=282347
* - Fix missing DEPENDS to silence build warningsSteve Wills2011-09-241-1/+2
| | | | Notes: svn path=/head/; revision=282341
* - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)Dmitry Marakasov2011-09-235-10/+8
| | | | | | | | | | | | - Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead PR: 157936 Submitted by: myself Exp-runs by: pav Approved by: pav Notes: svn path=/head/; revision=282282
* - Update to 0.6Wen Heping2011-09-222-3/+3
| | | | | | | ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.6/Changes Notes: svn path=/head/; revision=282166
* Change maintainer address to my FreeBSD addressCarlo Strub2011-09-152-2/+2
| | | | | | | Approved by: wen@ (mentor) Notes: svn path=/head/; revision=281802
* - Fix MASTER_SITES and WWW: lineWen Heping2011-08-262-33/+19
| | | | | | | | | | | - Add LICENSE - Support CC/CFLAGS properly PR: ports/160083 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Notes: svn path=/head/; revision=280434
* - Add missing BUILD_DEPENDSSteve Wills2011-08-181-1/+2
| | | | | | | | | PR: ports/159827 Submitted by: swills (me) Approved by: wen (maintainer) Notes: svn path=/head/; revision=279940
* Remove USE_GNOME=gnometarget from ports. It has been a empty keyword sinceKoop Mast2011-08-112-2/+0
| | | | | | | | | | mid 2008. PR: ports/159624 Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru> Notes: svn path=/head/; revision=279506
* - Update to 1.5.1Wen Heping2011-08-113-12/+41
| | | | Notes: svn path=/head/; revision=279485
* - Update to 0.40Frederic Culot2011-08-092-3/+6
| | | | | | | - Add LICENSE (Artistic 1 & GPLv1) Notes: svn path=/head/; revision=279366
* Remove WWW entries from unmaintained ports that return 404 or where the domainEmanuel Haupt2011-08-021-2/+0
| | | | | | | disappeared. Notes: svn path=/head/; revision=278829
* Deprecate port with no more public distfilesBaptiste Daroussin2011-08-021-0/+3
| | | | Notes: svn path=/head/; revision=278758
* Bye bye abandonwares (part 2)Baptiste Daroussin2011-08-0130-726/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | 2011-08-01 benchmarks/rawio: Looks like an abandonware, no more public distfiles 2011-08-01 benchmarks/tmetric: Looks like abandonware, no more public distfiles 2011-08-01 biology/L-Breeder: Looks like an abandonware, no more public distfile 2011-08-01 biology/crimap: Looks like an abandonware, no more public distfile 2011-08-01 biology/distribfold: No more upstream, looks like an abandonware 2011-08-01 biology/kinemage: Looks like an abandonware, no more public distfile 2011-08-01 biology/lsysexp: Looks like an abandonware, no more public distfile 2011-08-01 chinese/chm2html: Looks like an abandonware, no more public distfile 2011-08-01 chinese/ntuttf: No more public distfiles available 2011-08-01 chinese/reciteword: Looks like an abandonware, no more public distfile 2011-08-01 chinese/tocps: No more pulic distfiles 2011-08-01 chinese/xttmgr: Looks like an abandonware, no more public distfile 2011-08-01 comms/mserver: Looks like an abandonware, no more public distfiles 2011-08-01 comms/qicosi: Looks like an abandonware, no more public distfile 2011-08-01 comms/sms_client: Looks like an abandonware, no more public distfile 2011-08-01 comms/smstools: Looks like an abandonware, no more public distfile 2011-08-01 converters/siconv: Looks like an abandonware, no more public distfiles 2011-08-01 converters/utf8conv: Looks like an abandonware, no more public distfile 2011-08-01 databases/pgcluster: Looks like an abandonware, no more public distfile 2011-08-01 databases/py-MySQL: Please use databases/py-MySQLdb instead 2011-08-01 databases/py-SQLDict: Looks like an abandonware, no more public distfile 2011-08-01 databases/py-rrdpipe: Looks like an abandonware, no more public distfile 2011-08-01 databases/sybase_ase: no more public distfiles available Notes: svn path=/head/; revision=278678
* - Update to 0.39Sunpoet Po-Chuan Hsieh2011-08-013-3/+34
| | | | Notes: svn path=/head/; revision=278672
* Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,Mark Linimon2011-07-212-2/+2
| | | | | | | | | | | | | | | | | | | remove support for them from bsd.java.mk. As Jikes is not available in Java 1.5 or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports which used it (only occurences were USE_JIKES=no). Support for the Blackdown VM is also removed, as it is not available in Java 1.5 and higher. Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5. While here, replace static values of JAVA_VERSION in files/*.in by %%JAVA_VERSION%% . PR: ports/158969 Submitted by: rene Tested on: pointyhat-west -exp Notes: svn path=/head/; revision=278068
* - Update to 0.38Sunpoet Po-Chuan Hsieh2011-07-163-50/+64
| | | | | | | - Sort MAN3 and PLIST Notes: svn path=/head/; revision=277793
* - Update to 1.20Sunpoet Po-Chuan Hsieh2011-07-132-73/+71
| | | | | | | | | - Sort RUN_DEPENDS and MAN3 Changes: http://search.cpan.org/dist/Bio-MAGETAB/Changes Notes: svn path=/head/; revision=277634
* - kick MD5Martin Wilke2011-07-021-1/+0
| | | | Notes: svn path=/head/; revision=276859
* - Use USERS and GROUPSChris Rees2011-06-272-47/+3
| | | | | | | | | | | - Use ${SH} instead of calling script directly PR: ports/157575 Submitted by: Chris Rees (utisoft@gmail.com) Approved by: tabthorpe (co-mentor) Notes: svn path=/head/; revision=276513
* - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemyNicola Vitale2011-06-251-1/+2
| | | | | | | | (This port doesn't yet support SQLAlchemy 0.7.X) - Bump PORTREVISION Notes: svn path=/head/; revision=276318
* Switch dependency on povray to povray-meta port.Max Brazhnikov2011-06-201-2/+2
| | | | | | | Remove MD5 sum while I'm here. Notes: svn path=/head/; revision=275935
* Another bunch of deprecation: no more public distfiles and/or abandonwareBaptiste Daroussin2011-06-161-0/+3
| | | | Notes: svn path=/head/; revision=275692
* Another bunch of deprecation: no more public distfiles and/or abandonwareBaptiste Daroussin2011-06-163-0/+9
| | | | Notes: svn path=/head/; revision=275671
* - Update to 0.5Wen Heping2011-06-102-3/+3
| | | | | | | ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.5/Changes Notes: svn path=/head/; revision=275292
* Update to 1.1.04Julien Laffaye2011-06-095-126/+35
| | | | | | | | | PR: ports/157527 Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> Approved by: bapt (mentor) Notes: svn path=/head/; revision=275282
* deprecate and set expiration date:Baptiste Daroussin2011-06-081-0/+3
| | | | | | | it is an abandonware and it is unmaintain for very long Notes: svn path=/head/; revision=275231
* - Update to 0.4.3Wen Heping2011-06-022-3/+3
| | | | Notes: svn path=/head/; revision=274954
* - update to 2.24Baptiste Daroussin2011-06-013-3/+10
| | | | | | | | - add licenses - changes: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.24/Changes Notes: svn path=/head/; revision=274943
* - Update to 1.57Wen Heping2011-05-243-111/+18
| | | | | | | | | PR: ports/156329 Submitted by: Wen Heping (myself) Approved by: maintainer Notes: svn path=/head/; revision=274572
* Update to 1.6. Web site has been moved.Maho Nakata2011-05-114-10/+11
| | | | Notes: svn path=/head/; revision=273935
* Update math/gsl to 1.15, and adjust PORTREVISIONBrendan Fabeny2011-05-091-1/+2
| | | | | | | and LIB_DEPENDS of dependent ports Notes: svn path=/head/; revision=273882
* - Update to 0.4Wen Heping2011-05-092-3/+3
| | | | | | | http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.4/Changes Notes: svn path=/head/; revision=273839
* update to 1.4.1Maho Nakata2011-05-093-8/+41
| | | | | | | Notified by: Alvin Oga Notes: svn path=/head/; revision=273837
* - Update to 2.11Steve Wills2011-05-082-3/+3
| | | | | | | Changes: http://cpansearch.perl.org/dist/Bio-Das-Lite/Changes Notes: svn path=/head/; revision=273773
* Bump PORTREVISION after open-mofit updateMax Brazhnikov2011-05-024-2/+4
| | | | Notes: svn path=/head/; revision=273475
* Fix build with open-motif-2.3.3Max Brazhnikov2011-05-023-7/+72
| | | | | | | | | PR: ports/154044 Submitted by: Mikhail Tsatsenko <m.tsatsenko at gmail.com> Exp-runs by: pav Notes: svn path=/head/; revision=273474
* - Updated WWW: to a working linkGreg Larkin2011-04-221-14/+17
| | | | | | | | | | - Copied unbranded distfile (dotter.LIN) to LOCAL/glarkin for mirroring to MASTER_SITE_LOCAL and prevention of fetch checksum error. [1] Reported by: pointyhat (via miwi) Notes: svn path=/head/; revision=273070
* Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.Wen Heping2011-04-225-0/+49
| | | | | | | | | | All they do is convert back and forth between low-level Perl data structures and GFF3 text. WWW: http://search.cpan.org/dist/Bio-GFF3/ Notes: svn path=/head/; revision=273031
* - Update to 0.4.2Wen Heping2011-04-132-3/+3
| | | | Notes: svn path=/head/; revision=272667
* Update to GNU make 3.82 after numerous -exp runs.Ade Lovett2011-04-111-0/+11
| | | | Notes: svn path=/head/; revision=272537
* - Update to 0.36Wen Heping2011-04-013-4/+14
| | | | Notes: svn path=/head/; revision=272081